Wall clock time and date at job start Tue Mar 31 2020 06:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.47097 * 2 1 4 4 H 1.09006 * 109.47313 * 305.00007 * 3 2 1 5 5 C 1.50694 * 109.47204 * 185.00004 * 3 2 1 6 6 H 1.08002 * 120.00138 * 239.99857 * 5 3 2 7 7 C 1.37876 * 120.00147 * 59.99875 * 5 3 2 8 8 N 1.31521 * 119.99742 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00423 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46940 * 90.00019 * 9 7 5 11 11 H 1.48502 * 109.46921 * 210.00078 * 9 7 5 12 12 H 1.48500 * 109.46747 * 329.99983 * 9 7 5 13 13 N 1.46508 * 109.47144 * 65.00016 * 3 2 1 14 14 C 1.34769 * 119.99796 * 274.99899 * 13 3 2 15 15 O 1.21568 * 120.00534 * 359.97438 * 14 13 3 16 16 N 1.34782 * 119.99830 * 179.97438 * 14 13 3 17 17 C 1.38902 * 119.99944 * 174.89620 * 16 14 13 18 18 C 1.39301 * 119.52684 * 185.11493 * 17 16 14 19 19 C 1.36909 * 119.39109 * 179.76889 * 18 17 16 20 20 C 1.40350 * 118.47519 * 0.49726 * 19 18 17 21 21 C 1.47465 * 120.48353 * 179.76451 * 20 19 18 22 22 O 1.21504 * 120.00137 * 359.97438 * 21 20 19 23 23 O 1.34753 * 119.99805 * 179.97438 * 21 20 19 24 24 C 1.39620 * 119.02585 * 359.74855 * 20 19 18 25 25 N 1.31662 * 120.50548 * 359.97438 * 24 20 19 26 26 H 1.09004 * 109.46768 * 299.99859 * 1 2 3 27 27 H 1.08997 * 109.46807 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47257 * 59.99922 * 1 2 3 29 29 H 1.09001 * 109.46906 * 120.00393 * 2 1 3 30 30 H 1.08994 * 109.46775 * 240.00147 * 2 1 3 31 31 H 0.96998 * 119.99751 * 180.02562 * 8 7 5 32 32 H 0.96993 * 119.99599 * 95.00257 * 13 3 2 33 33 H 0.96996 * 119.99957 * 354.90439 * 16 14 13 34 34 H 1.08000 * 120.29840 * 359.97438 * 18 17 16 35 35 H 1.07998 * 120.76140 * 180.24451 * 19 18 17 36 36 H 0.96693 * 116.99985 * 179.97438 * 23 21 20 37 37 H 1.07994 * 119.74419 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3520 -0.7599 11 1 6.3835 0.9214 -2.8166 12 1 6.5576 2.0719 -0.6889 13 7 1.6525 2.0975 1.2519 14 6 0.4353 2.6643 1.3670 15 8 -0.3410 2.6326 0.4319 16 7 0.0785 3.2665 2.5188 17 6 -1.1321 3.9423 2.6032 18 6 -1.4435 4.6509 3.7614 19 6 -2.6354 5.3199 3.8398 20 6 -3.5111 5.2574 2.7448 21 6 -4.8087 5.9570 2.7837 22 8 -5.1267 6.5930 3.7689 23 8 -5.6417 5.8908 1.7266 24 6 -3.1355 4.5235 1.6180 25 7 -1.9767 3.8994 1.5826 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.8293 -0.0610 -2.9499 32 1 2.2720 2.1231 1.9977 33 1 0.6672 3.2280 3.2887 34 1 -0.7495 4.6750 4.5886 35 1 -2.8976 5.8794 4.7255 36 1 -6.4811 6.3653 1.7988 37 1 -3.8006 4.4673 0.7690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:36 Heat of formation + Delta-G solvation = -95.751619 kcal Electronic energy + Delta-G solvation = -22850.839288 eV Core-core repulsion = 19206.846309 eV Total energy + Delta-G solvation = -3643.992979 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.08129 -41.13573 -40.10741 -37.26249 -37.05766 -35.81742 -34.30668 -33.59907 -32.82193 -31.31342 -28.88743 -26.03490 -25.06713 -24.79093 -22.93290 -22.07097 -21.31651 -20.01976 -19.21407 -19.10269 -18.27724 -17.87582 -17.07999 -16.80679 -16.73382 -16.54055 -15.92709 -15.48288 -15.22525 -14.95088 -14.70526 -14.50333 -14.07551 -13.91125 -13.71897 -13.49893 -13.15326 -12.86860 -12.65456 -12.58553 -12.16211 -12.05212 -11.88485 -11.85095 -11.53513 -11.28919 -11.03593 -11.01051 -10.51779 -10.11608 -9.70897 -9.30809 -8.13786 -6.30751 -0.49840 0.29093 1.46243 1.46943 1.47552 1.55029 1.60232 2.10662 2.28997 2.43492 2.89888 3.14130 3.18208 3.60831 3.79294 3.84320 3.96710 4.34442 4.52708 4.60138 4.60956 4.76663 4.81631 5.05539 5.08516 5.17459 5.27243 5.46931 5.53844 5.57501 5.62915 5.66844 5.74628 5.87566 6.10479 6.19950 6.77299 6.86594 7.00854 7.33058 7.38903 7.77464 8.91655 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034810 B = 0.003065 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.173271 B = 9133.688015 C = 9442.173090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.298 3.702 4 H -0.002 1.002 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.714 5.714 14 C 0.679 3.321 15 O -0.567 6.567 16 N -0.654 5.654 17 C 0.401 3.599 18 C -0.205 4.205 19 C 0.020 3.980 20 C -0.238 4.238 21 C 0.548 3.452 22 O -0.547 6.547 23 O -0.507 6.507 24 C 0.192 3.808 25 N -0.528 5.528 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.264 0.736 32 H 0.402 0.598 33 H 0.433 0.567 34 H 0.186 0.814 35 H 0.172 0.828 36 H 0.434 0.566 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 8.793 14.251 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.368 5.368 14 C 0.379 3.621 15 O -0.441 6.441 16 N -0.303 5.303 17 C 0.168 3.832 18 C -0.228 4.228 19 C -0.005 4.005 20 C -0.244 4.244 21 C 0.394 3.606 22 O -0.440 6.440 23 O -0.321 6.321 24 C 0.032 3.968 25 N -0.243 5.243 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.274 0.726 34 H 0.204 0.796 35 H 0.190 0.810 36 H 0.297 0.703 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.527 8.065 12.629 18.313 hybrid contribution 0.562 0.535 0.708 1.050 sum -9.965 8.599 13.338 18.739 Atomic orbital electron populations 1.21626 0.97080 0.98759 1.00149 1.21807 0.93554 0.99308 1.01314 1.18253 0.93419 0.88739 0.80173 0.98376 1.21563 0.91292 1.38878 1.06704 0.90821 1.25754 1.03188 0.94471 0.95051 1.70056 1.37017 1.38338 1.09879 0.85375 0.79232 0.78845 0.77042 1.19709 1.21517 1.18871 1.45475 1.13841 1.58919 1.18565 1.16351 0.83285 0.79330 0.83156 1.91011 1.51855 1.62357 1.38879 1.42736 1.19083 1.53433 1.15036 1.18940 0.85446 0.88354 0.90482 1.21443 1.00522 1.02063 0.98756 1.21420 0.90131 0.92057 0.96908 1.20066 0.95891 1.08936 0.99458 1.20397 0.83919 0.76650 0.79652 1.90872 1.76402 1.42138 1.34541 1.84543 1.33929 1.71392 1.42195 1.23283 0.90547 0.86716 0.96294 1.67871 1.04523 1.22966 1.28929 0.94061 0.93981 0.95679 0.93932 0.91010 0.92639 0.76266 0.72634 0.79630 0.81034 0.70326 0.80700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.99 0.61 -4.78 16 2 C -0.12 -5.85 5.45 30.60 0.17 -5.68 16 3 C 0.30 14.86 2.24 44.24 0.10 14.95 16 4 H 0.00 -0.10 7.58 -2.38 -0.02 -0.12 16 5 C -0.55 -27.97 8.73 25.60 0.22 -27.75 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.91 -51.64 11.30 21.45 0.24 -51.40 16 9 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 13 N -0.71 -27.85 5.03 -461.43 -2.32 -30.17 16 14 C 0.68 26.17 7.09 179.05 1.27 27.44 16 15 O -0.57 -27.13 11.72 -3.93 -0.05 -27.18 16 16 N -0.65 -17.55 5.38 -322.27 -1.73 -19.28 16 17 C 0.40 10.79 7.41 133.09 0.99 11.77 16 18 C -0.20 -3.53 9.86 22.21 0.22 -3.31 16 19 C 0.02 0.36 9.65 22.47 0.22 0.57 16 20 C -0.24 -5.15 5.89 -20.00 -0.12 -5.26 16 21 C 0.55 11.09 8.27 70.25 0.58 11.67 16 22 O -0.55 -13.28 17.20 19.82 0.34 -12.94 16 23 O -0.51 -7.44 12.70 -56.63 -0.72 -8.16 16 24 C 0.19 5.03 10.79 85.05 0.92 5.95 16 25 N -0.53 -17.46 7.85 -192.06 -1.51 -18.97 16 26 H 0.04 1.82 5.65 -2.38 -0.01 1.81 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.02 1.23 7.84 -2.39 -0.02 1.21 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.40 12.65 8.56 -92.71 -0.79 11.85 16 33 H 0.43 7.31 8.71 -92.71 -0.81 6.50 16 34 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.17 2.26 7.73 -2.91 -0.02 2.24 16 36 H 0.43 2.16 9.11 -74.06 -0.67 1.48 16 37 H 0.18 4.12 7.61 -2.91 -0.02 4.10 16 Total: -1.00 -75.97 320.32 0.79 -75.18 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -1.12 Total: 22.87 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 5.62 Total: 26.83 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -5.32 Total: -119.82 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -0.42 Total: -48.28 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -75.97 0.79 -75.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.573 kcal (2) G-P(sol) polarization free energy of solvation -75.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds