Wall clock time and date at job start Tue Mar 31 2020 08:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47050 * 2 1 4 4 C 1.53007 * 109.47199 * 119.99614 * 2 1 3 5 5 C 1.50693 * 109.47009 * 185.00192 * 4 2 1 6 6 O 1.20827 * 120.00355 * 0.02562 * 5 4 2 7 7 O 1.34232 * 119.99890 * 180.02562 * 5 4 2 8 8 N 1.46501 * 109.47139 * 239.99599 * 2 1 3 9 9 C 1.34774 * 119.99620 * 85.00258 * 8 2 1 10 10 O 1.21579 * 120.00452 * 359.97438 * 9 8 2 11 11 N 1.34780 * 119.99712 * 179.97438 * 9 8 2 12 12 C 1.39469 * 119.99974 * 184.45878 * 11 9 8 13 13 C 1.38637 * 119.64699 * 173.77657 * 12 11 9 14 14 C 1.40828 * 118.67343 * 180.25289 * 13 12 11 15 15 C 1.41540 * 120.99665 * 179.75020 * 14 13 12 16 16 H 1.07998 * 120.00169 * 20.95316 * 15 14 13 17 17 C 1.40028 * 119.99911 * 200.95631 * 15 14 13 18 18 N 1.30740 * 119.99787 * 13.32459 * 17 15 14 19 19 Si 1.86804 * 120.00126 * 193.32221 * 17 15 14 20 20 H 1.48503 * 109.46715 * 90.00304 * 19 17 15 21 21 H 1.48497 * 109.47038 * 209.99702 * 19 17 15 22 22 H 1.48491 * 109.46991 * 330.00075 * 19 17 15 23 23 C 1.41160 * 118.00101 * 359.51261 * 14 13 12 24 24 C 1.36588 * 119.12859 * 0.51490 * 23 14 13 25 25 N 1.32067 * 121.26069 * 359.71832 * 24 23 14 26 26 H 1.09000 * 109.46611 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47269 * 300.00136 * 1 2 3 28 28 H 1.09002 * 109.46902 * 60.00605 * 1 2 3 29 29 H 1.09001 * 109.47081 * 305.00317 * 4 2 1 30 30 H 1.09002 * 109.46860 * 65.00223 * 4 2 1 31 31 H 0.96695 * 116.99777 * 180.02562 * 7 5 4 32 32 H 0.96999 * 119.99827 * 264.99933 * 8 2 1 33 33 H 0.96994 * 120.00381 * 4.46125 * 11 9 8 34 34 H 1.07996 * 120.66431 * 359.97438 * 13 12 11 35 35 H 0.97002 * 120.00016 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.43507 * 180.25400 * 23 14 13 37 37 H 1.08008 * 119.37018 * 179.74958 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1427 -0.0225 0.4478 7 8 4.2122 -1.1780 2.3303 8 7 2.0184 -0.6907 -1.1961 9 6 2.1471 -0.0184 -2.3571 10 8 1.8576 1.1612 -2.4119 11 7 2.5969 -0.6536 -3.4574 12 6 2.8186 0.0617 -4.6339 13 6 3.4023 -0.5703 -5.7211 14 6 3.6217 0.1729 -6.8970 15 6 4.2189 -0.4216 -8.0342 16 1 4.2072 -1.4952 -8.1513 17 6 4.8250 0.3822 -9.0075 18 7 5.0734 1.6405 -8.7540 19 14 5.2788 -0.3433 -10.6680 20 1 4.1375 -0.1864 -11.6052 21 1 6.4656 0.3655 -11.2103 22 1 5.5936 -1.7857 -10.5086 23 6 3.2234 1.5270 -6.9092 24 6 2.6559 2.0633 -5.7884 25 7 2.4695 1.3380 -4.7006 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7715 1.2057 31 1 5.1745 -1.0829 2.3280 32 1 2.2491 -1.6318 -1.1525 33 1 2.7663 -1.6083 -3.4310 34 1 3.6873 -1.6105 -5.6657 35 1 5.4936 2.1973 -9.4281 36 1 3.3693 2.1323 -7.7917 37 1 2.3535 3.1001 -5.7921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599832707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:54 Heat of formation + Delta-G solvation = -82.794500 kcal Electronic energy + Delta-G solvation = -22799.301495 eV Core-core repulsion = 19155.870379 eV Total energy + Delta-G solvation = -3643.431116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58903 -39.65019 -38.07313 -36.50883 -35.61889 -34.29412 -33.49645 -31.41712 -30.58251 -28.67580 -28.07423 -25.94851 -23.29945 -22.01372 -21.63167 -20.60448 -20.08998 -18.20994 -18.00080 -17.76995 -16.75112 -16.44333 -15.84708 -15.39488 -14.97508 -14.57619 -14.30766 -14.06081 -13.76189 -13.48243 -13.08213 -12.95768 -12.67121 -12.62215 -12.32433 -12.15354 -11.96743 -11.66572 -11.39506 -11.22276 -11.15014 -10.91273 -10.69178 -10.33305 -9.94952 -9.66460 -9.44022 -9.32921 -8.79591 -7.97340 -7.62574 -6.93455 -6.70532 -4.57695 2.04859 2.78521 2.78993 2.85758 3.01603 3.04471 3.07623 3.30660 3.87089 3.97589 4.34479 4.53581 4.75107 4.79913 4.93861 5.17987 5.29671 5.37806 5.60383 5.79899 5.88579 6.07916 6.18030 6.32121 6.60601 6.67355 6.76547 6.85397 6.96568 7.21504 7.32754 7.51863 7.64646 7.71561 7.96850 8.16218 8.41627 8.57394 8.79846 8.82041 9.25980 9.84280 10.11230 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.028737 B = 0.003145 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.136047 B = 8899.615026 C = 9307.832692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.173 3.827 3 H 0.098 0.902 4 C -0.121 4.121 5 C 0.467 3.533 6 O -0.490 6.490 7 O -0.524 6.524 8 N -0.745 5.745 9 C 0.698 3.302 10 O -0.529 6.529 11 N -0.671 5.671 12 C 0.369 3.631 13 C -0.310 4.310 14 C 0.144 3.856 15 C -0.452 4.452 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.786 5.786 19 Si 0.916 3.084 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.231 4.231 24 C 0.104 3.896 25 N -0.552 5.552 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.410 0.590 32 H 0.387 0.613 33 H 0.400 0.600 34 H 0.099 0.901 35 H 0.282 0.718 36 H 0.135 0.865 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 -7.595 16.355 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.067 3.933 3 H 0.116 0.884 4 C -0.159 4.159 5 C 0.307 3.693 6 O -0.376 6.376 7 O -0.337 6.337 8 N -0.403 5.403 9 C 0.398 3.602 10 O -0.399 6.399 11 N -0.318 5.318 12 C 0.140 3.860 13 C -0.337 4.337 14 C 0.136 3.864 15 C -0.483 4.483 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.411 5.411 19 Si 0.740 3.260 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.254 4.254 24 C -0.046 4.046 25 N -0.272 5.272 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.128 0.872 31 H 0.269 0.731 32 H 0.219 0.781 33 H 0.234 0.766 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.153 0.847 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.062 -5.685 16.738 18.388 hybrid contribution 1.639 -1.644 -1.381 2.701 sum -3.423 -7.329 15.357 17.357 Atomic orbital electron populations 1.22205 0.94490 1.02230 1.03226 1.20506 0.93677 0.97840 0.81277 0.88427 1.21768 0.87877 1.04870 1.01379 1.23488 0.91770 0.75479 0.78528 1.90872 1.70121 1.38546 1.38043 1.84511 1.27193 1.73065 1.48944 1.45126 1.73214 1.12952 1.08998 1.15963 0.78957 0.85432 0.79880 1.91007 1.52590 1.13176 1.83144 1.42552 1.68791 1.11028 1.09475 1.17750 0.94758 0.89780 0.83761 1.21120 1.17389 1.00674 0.94494 1.17584 0.86799 0.91438 0.90592 1.19590 1.31182 0.94810 1.02732 0.90186 1.25993 0.93549 0.94551 1.00303 1.69766 1.30026 1.06845 1.34499 0.86195 0.78634 0.80179 0.81019 1.19171 1.20187 1.18562 1.22173 1.05423 0.97733 1.00076 1.21640 0.96487 0.97640 0.88883 1.67213 1.26392 1.05045 1.28519 0.92424 0.91640 0.90936 0.86224 0.87245 0.73143 0.78080 0.76596 0.88255 0.90660 0.84700 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.48 37.16 0.35 -1.22 16 2 C 0.17 1.96 2.14 -67.92 -0.15 1.81 16 3 H 0.10 1.44 7.39 -51.93 -0.38 1.06 16 4 C -0.12 -0.87 5.35 -27.88 -0.15 -1.02 16 5 C 0.47 4.70 8.19 36.00 0.29 5.00 16 6 O -0.49 -7.45 16.11 -18.75 -0.30 -7.75 16 7 O -0.52 -3.92 13.42 -39.26 -0.53 -4.44 16 8 N -0.75 -10.12 4.22 -58.67 -0.25 -10.37 16 9 C 0.70 13.74 8.49 -86.92 -0.74 13.00 16 10 O -0.53 -12.88 14.27 5.30 0.08 -12.80 16 11 N -0.67 -13.30 5.40 -15.86 -0.09 -13.38 16 12 C 0.37 9.14 7.42 -154.67 -1.15 7.99 16 13 C -0.31 -7.77 9.74 -38.46 -0.37 -8.14 16 14 C 0.14 3.91 5.64 -106.55 -0.60 3.31 16 15 C -0.45 -11.87 9.14 -37.65 -0.34 -12.22 16 16 H 0.08 1.99 7.88 -52.49 -0.41 1.58 16 17 C 0.08 1.86 5.29 -17.35 -0.09 1.77 16 18 N -0.79 -20.12 10.56 55.55 0.59 -19.53 16 19 Si 0.92 18.31 29.58 -169.99 -5.03 13.28 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 21 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C -0.23 -6.22 8.78 -39.07 -0.34 -6.56 16 24 C 0.10 2.73 11.10 -18.05 -0.20 2.53 16 25 N -0.55 -14.90 7.86 -12.75 -0.10 -15.00 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.41 1.73 9.10 45.56 0.41 2.15 16 32 H 0.39 4.02 8.62 -40.82 -0.35 3.67 16 33 H 0.40 6.19 8.71 -40.82 -0.36 5.84 16 34 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 35 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 36 H 0.14 3.67 5.85 -52.49 -0.31 3.36 16 37 H 0.12 2.86 8.06 -52.48 -0.42 2.43 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -36.85 326.20 -7.69 -44.55 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -3.49 Total: 14.30 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -3.49 Total: 6.24 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.15 Total: -58.29 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.75 Total: -24.99 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.85 -7.69 -44.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599832707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.249 kcal (2) G-P(sol) polarization free energy of solvation -36.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds