Wall clock time and date at job start Tue Mar 31 2020 08:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47050 * 2 1 4 4 C 1.53007 * 109.47199 * 119.99614 * 2 1 3 5 5 C 1.50693 * 109.47009 * 185.00192 * 4 2 1 6 6 O 1.20827 * 120.00355 * 0.02562 * 5 4 2 7 7 O 1.34232 * 119.99890 * 180.02562 * 5 4 2 8 8 N 1.46501 * 109.47139 * 239.99599 * 2 1 3 9 9 C 1.34774 * 119.99620 * 85.00258 * 8 2 1 10 10 O 1.21579 * 120.00452 * 359.97438 * 9 8 2 11 11 N 1.34780 * 119.99712 * 179.97438 * 9 8 2 12 12 C 1.39469 * 119.99974 * 184.45878 * 11 9 8 13 13 C 1.38637 * 119.64699 * 173.77657 * 12 11 9 14 14 C 1.40828 * 118.67343 * 180.25289 * 13 12 11 15 15 C 1.41540 * 120.99665 * 179.75020 * 14 13 12 16 16 H 1.07998 * 120.00169 * 20.95316 * 15 14 13 17 17 C 1.40028 * 119.99911 * 200.95631 * 15 14 13 18 18 N 1.30740 * 119.99787 * 13.32459 * 17 15 14 19 19 Si 1.86804 * 120.00126 * 193.32221 * 17 15 14 20 20 H 1.48503 * 109.46715 * 90.00304 * 19 17 15 21 21 H 1.48497 * 109.47038 * 209.99702 * 19 17 15 22 22 H 1.48491 * 109.46991 * 330.00075 * 19 17 15 23 23 C 1.41160 * 118.00101 * 359.51261 * 14 13 12 24 24 C 1.36588 * 119.12859 * 0.51490 * 23 14 13 25 25 N 1.32067 * 121.26069 * 359.71832 * 24 23 14 26 26 H 1.09000 * 109.46611 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47269 * 300.00136 * 1 2 3 28 28 H 1.09002 * 109.46902 * 60.00605 * 1 2 3 29 29 H 1.09001 * 109.47081 * 305.00317 * 4 2 1 30 30 H 1.09002 * 109.46860 * 65.00223 * 4 2 1 31 31 H 0.96695 * 116.99777 * 180.02562 * 7 5 4 32 32 H 0.96999 * 119.99827 * 264.99933 * 8 2 1 33 33 H 0.96994 * 120.00381 * 4.46125 * 11 9 8 34 34 H 1.07996 * 120.66431 * 359.97438 * 13 12 11 35 35 H 0.97002 * 120.00016 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.43507 * 180.25400 * 23 14 13 37 37 H 1.08008 * 119.37018 * 179.74958 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1427 -0.0225 0.4478 7 8 4.2122 -1.1780 2.3303 8 7 2.0184 -0.6907 -1.1961 9 6 2.1471 -0.0184 -2.3571 10 8 1.8576 1.1612 -2.4119 11 7 2.5969 -0.6536 -3.4574 12 6 2.8186 0.0617 -4.6339 13 6 3.4023 -0.5703 -5.7211 14 6 3.6217 0.1729 -6.8970 15 6 4.2189 -0.4216 -8.0342 16 1 4.2072 -1.4952 -8.1513 17 6 4.8250 0.3822 -9.0075 18 7 5.0734 1.6405 -8.7540 19 14 5.2788 -0.3433 -10.6680 20 1 4.1375 -0.1864 -11.6052 21 1 6.4656 0.3655 -11.2103 22 1 5.5936 -1.7857 -10.5086 23 6 3.2234 1.5270 -6.9092 24 6 2.6559 2.0633 -5.7884 25 7 2.4695 1.3380 -4.7006 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7715 1.2057 31 1 5.1745 -1.0829 2.3280 32 1 2.2491 -1.6318 -1.1525 33 1 2.7663 -1.6083 -3.4310 34 1 3.6873 -1.6105 -5.6657 35 1 5.4936 2.1973 -9.4281 36 1 3.3693 2.1323 -7.7917 37 1 2.3535 3.1001 -5.7921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599832707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:54 Heat of formation + Delta-G solvation = -110.574911 kcal Electronic energy + Delta-G solvation = -22800.506144 eV Core-core repulsion = 19155.870379 eV Total energy + Delta-G solvation = -3644.635765 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62528 -41.04733 -39.81351 -37.44765 -36.71029 -36.08030 -35.30832 -32.63440 -32.55186 -30.04964 -29.26570 -27.92728 -24.51349 -23.64247 -23.26740 -21.81056 -21.46741 -19.70714 -19.40840 -18.95331 -17.85685 -17.49651 -17.24533 -16.85348 -16.45247 -16.15431 -15.97309 -15.85612 -15.13373 -14.84866 -14.56018 -14.36958 -14.16973 -13.73492 -13.44454 -13.21036 -13.12428 -12.88729 -12.86678 -12.80998 -12.47312 -12.06627 -11.99088 -11.82630 -11.56364 -11.47017 -11.19654 -11.17098 -10.05715 -9.97984 -9.59437 -8.83287 -8.59717 -6.58834 0.85366 1.00833 1.29345 1.40696 1.55271 1.59306 1.66358 2.16544 2.19529 2.37146 2.84745 3.21692 3.57945 3.78764 4.12272 4.14849 4.24753 4.53614 4.63359 4.69708 4.72219 4.85847 4.86797 4.94102 5.04700 5.07748 5.27144 5.37502 5.52522 5.62235 5.66220 5.69821 5.92161 5.97832 6.26828 6.56206 6.79941 6.83375 7.03943 7.06023 7.68501 7.94902 8.25927 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.028737 B = 0.003145 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.136047 B = 8899.615026 C = 9307.832692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.055 0.945 4 C -0.108 4.108 5 C 0.472 3.528 6 O -0.553 6.553 7 O -0.513 6.513 8 N -0.722 5.722 9 C 0.692 3.308 10 O -0.582 6.582 11 N -0.662 5.662 12 C 0.366 3.634 13 C -0.320 4.320 14 C 0.116 3.884 15 C -0.477 4.477 16 H 0.088 0.912 17 C 0.033 3.967 18 N -0.815 5.815 19 Si 0.996 3.004 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.254 1.254 23 C -0.250 4.250 24 C 0.096 3.904 25 N -0.581 5.581 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.030 0.970 29 H 0.157 0.843 30 H 0.148 0.852 31 H 0.424 0.576 32 H 0.406 0.594 33 H 0.420 0.580 34 H 0.122 0.878 35 H 0.292 0.708 36 H 0.127 0.873 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 -10.105 17.465 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.061 3.939 3 H 0.074 0.926 4 C -0.146 4.146 5 C 0.315 3.685 6 O -0.443 6.443 7 O -0.327 6.327 8 N -0.379 5.379 9 C 0.392 3.608 10 O -0.456 6.456 11 N -0.311 5.311 12 C 0.136 3.864 13 C -0.346 4.346 14 C 0.108 3.892 15 C -0.508 4.508 16 H 0.107 0.893 17 C -0.184 4.184 18 N -0.440 5.440 19 Si 0.815 3.185 20 H -0.185 1.185 21 H -0.192 1.192 22 H -0.177 1.177 23 C -0.274 4.274 24 C -0.055 4.055 25 N -0.301 5.301 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.049 0.951 29 H 0.174 0.826 30 H 0.166 0.834 31 H 0.285 0.715 32 H 0.242 0.758 33 H 0.258 0.742 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.144 0.856 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.216 -8.281 17.952 20.447 hybrid contribution 1.716 -0.873 -1.582 2.492 sum -3.499 -9.154 16.370 19.080 Atomic orbital electron populations 1.22125 0.92767 1.03752 1.02619 1.20697 0.94960 0.96283 0.81959 0.92621 1.21812 0.85816 1.06848 1.00101 1.24026 0.92858 0.73888 0.77686 1.90874 1.71521 1.41440 1.40489 1.84481 1.28546 1.72051 1.47599 1.44959 1.71614 1.13694 1.07683 1.16228 0.78510 0.85072 0.80987 1.90970 1.54817 1.15670 1.84138 1.42409 1.68477 1.11845 1.08393 1.18033 0.93712 0.89428 0.85258 1.21312 1.17597 1.01662 0.94067 1.18009 0.87432 0.91885 0.91894 1.19937 1.31823 0.95562 1.03455 0.89344 1.26984 0.92745 0.94712 1.03960 1.69823 1.29822 1.08220 1.36132 0.85001 0.78553 0.79550 0.75382 1.18518 1.19248 1.17703 1.22144 1.06940 0.98189 1.00116 1.21901 0.96297 0.98446 0.88809 1.67316 1.27663 1.06331 1.28776 0.89729 0.88766 0.95065 0.82582 0.83385 0.71509 0.75797 0.74194 0.85989 0.89678 0.85565 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.48 71.98 0.68 -1.99 16 2 C 0.17 3.55 2.14 44.99 0.10 3.64 16 3 H 0.06 1.70 7.39 -2.38 -0.02 1.68 16 4 C -0.11 -1.17 5.35 29.85 0.16 -1.01 16 5 C 0.47 8.52 8.19 71.23 0.58 9.11 16 6 O -0.55 -16.76 16.11 21.96 0.35 -16.41 16 7 O -0.51 -6.22 13.42 -51.44 -0.69 -6.91 16 8 N -0.72 -18.92 4.22 -457.80 -1.93 -20.85 16 9 C 0.69 27.67 8.49 179.05 1.52 29.19 16 10 O -0.58 -29.52 14.27 -3.96 -0.06 -29.58 16 11 N -0.66 -26.35 5.40 -322.37 -1.74 -28.09 16 12 C 0.37 18.53 7.42 132.76 0.98 19.52 16 13 C -0.32 -16.25 9.74 23.00 0.22 -16.03 16 14 C 0.12 6.46 5.64 -21.11 -0.12 6.34 16 15 C -0.48 -25.27 9.14 23.52 0.22 -25.05 16 16 H 0.09 4.38 7.88 -2.91 -0.02 4.36 16 17 C 0.03 1.61 5.29 85.29 0.45 2.07 16 18 N -0.81 -42.16 10.56 21.84 0.23 -41.93 16 19 Si 1.00 36.79 29.58 68.60 2.03 38.82 16 20 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 21 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 22 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 23 C -0.25 -14.03 8.78 22.60 0.20 -13.84 16 24 C 0.10 5.24 11.10 84.27 0.94 6.18 16 25 N -0.58 -32.50 7.86 -194.27 -1.53 -34.02 16 26 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.16 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.42 2.70 9.10 -74.06 -0.67 2.03 16 32 H 0.41 7.49 8.62 -92.71 -0.80 6.69 16 33 H 0.42 12.62 8.71 -92.71 -0.81 11.81 16 34 H 0.12 5.44 8.06 -2.91 -0.02 5.41 16 35 H 0.29 13.54 8.29 -92.71 -0.77 12.78 16 36 H 0.13 7.17 5.85 -2.91 -0.02 7.15 16 37 H 0.13 6.68 8.06 -2.91 -0.02 6.66 16 Total: -1.00 -85.34 326.20 1.47 -83.87 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: -1.13 Total: 36.99 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 5.93 Total: 18.12 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -4.97 Total: -124.90 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -0.39 Total: -52.90 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Total: -85.34 1.47 -83.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599832707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.701 kcal (2) G-P(sol) polarization free energy of solvation -85.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds