Wall clock time and date at job start Tue Mar 31 2020 08:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47797 * 2 1 4 4 C 1.53000 * 109.46843 * 239.99732 * 2 1 3 5 5 C 1.50701 * 109.47494 * 174.99988 * 4 2 1 6 6 O 1.20831 * 119.99536 * 0.02562 * 5 4 2 7 7 O 1.34224 * 120.00334 * 180.02562 * 5 4 2 8 8 N 1.46502 * 109.47319 * 120.00175 * 2 1 3 9 9 C 1.34772 * 120.00117 * 274.99983 * 8 2 1 10 10 O 1.21580 * 119.99946 * 359.97438 * 9 8 2 11 11 N 1.34777 * 119.99919 * 179.97438 * 9 8 2 12 12 C 1.39466 * 119.99582 * 175.05874 * 11 9 8 13 13 C 1.38647 * 119.64245 * 174.21890 * 12 11 9 14 14 C 1.40826 * 118.66903 * 179.71896 * 13 12 11 15 15 C 1.41538 * 120.99312 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00344 * 147.47416 * 15 14 13 17 17 C 1.40032 * 120.00277 * 327.47337 * 15 14 13 18 18 N 1.30749 * 119.99828 * 359.81920 * 17 15 14 19 19 Si 1.86803 * 120.00143 * 179.82267 * 17 15 14 20 20 H 1.48498 * 109.47116 * 60.00023 * 19 17 15 21 21 H 1.48500 * 109.46965 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46972 * 299.99577 * 19 17 15 23 23 C 1.41160 * 118.00569 * 0.02562 * 14 13 12 24 24 C 1.36594 * 119.13059 * 0.02562 * 23 14 13 25 25 N 1.32061 * 121.25622 * 359.97438 * 24 23 14 26 26 H 1.08994 * 109.47797 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46598 * 299.99775 * 1 2 3 28 28 H 1.08997 * 109.46974 * 59.99309 * 1 2 3 29 29 H 1.08995 * 109.47682 * 295.00569 * 4 2 1 30 30 H 1.09006 * 109.46613 * 55.00539 * 4 2 1 31 31 H 0.96702 * 116.99992 * 180.02562 * 7 5 4 32 32 H 0.97002 * 119.99684 * 94.99250 * 8 2 1 33 33 H 0.96998 * 119.99976 * 355.06156 * 11 9 8 34 34 H 1.07994 * 120.66688 * 359.74394 * 13 12 11 35 35 H 0.96994 * 119.99357 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.43546 * 179.97438 * 23 14 13 37 37 H 1.07998 * 119.36918 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6151 -1.3129 6 8 4.1427 -0.0235 -0.4475 7 8 4.2119 -1.1775 -2.3308 8 7 2.0184 -0.6906 1.1961 9 6 2.1471 -0.0184 2.3571 10 8 1.8584 1.1614 2.4116 11 7 2.5959 -0.6539 3.4576 12 6 2.8272 0.0631 4.6313 13 6 3.1727 -0.6132 5.7912 14 6 3.4075 0.1316 6.9631 15 6 3.7624 -0.5083 8.1746 16 1 4.4187 -0.0131 8.8749 17 6 3.2626 -1.7837 8.4654 18 7 2.4652 -2.3819 7.6193 19 14 3.7351 -2.6304 10.0621 20 1 3.2929 -1.8011 11.2118 21 1 3.0783 -3.9605 10.1302 22 1 5.2092 -2.8025 10.1137 23 6 3.2771 1.5355 6.8935 24 6 2.9313 2.1131 5.7050 25 7 2.7184 1.3835 4.6249 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.7515 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1369 31 1 5.1743 -1.0832 -2.3282 32 1 2.2490 -1.6318 1.1525 33 1 2.7581 -1.6099 3.4334 34 1 3.2604 -1.6896 5.7959 35 1 2.1194 -3.2654 7.8206 36 1 3.4478 2.1449 7.7687 37 1 2.8301 3.1867 5.6474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599887609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:58 Heat of formation + Delta-G solvation = -83.483969 kcal Electronic energy + Delta-G solvation = -22963.061031 eV Core-core repulsion = 19319.600017 eV Total energy + Delta-G solvation = -3643.461014 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56787 -39.62637 -38.09935 -36.48900 -35.58102 -34.11939 -33.62114 -31.45123 -30.39755 -28.68077 -28.14808 -25.91730 -23.26406 -21.98777 -21.73474 -20.54181 -20.05094 -18.19932 -18.05024 -17.60076 -16.75525 -16.39372 -15.85220 -15.34701 -15.00149 -14.52958 -14.24933 -14.12751 -13.77373 -13.39782 -13.05331 -12.86130 -12.65737 -12.59603 -12.51165 -12.16599 -11.96179 -11.64878 -11.38156 -11.16888 -11.13035 -10.85079 -10.67334 -10.22997 -10.09841 -9.66017 -9.47500 -9.33171 -8.76262 -7.82286 -7.68903 -6.93184 -6.65059 -4.58127 2.06640 2.75910 2.80796 2.87827 3.04746 3.07280 3.08093 3.29540 3.91443 3.98593 4.37137 4.57639 4.78115 4.82853 4.96426 5.20271 5.32492 5.40681 5.62947 5.73231 5.88970 6.05820 6.21047 6.33490 6.59738 6.68209 6.79205 6.84865 7.02508 7.20819 7.35159 7.48031 7.56463 7.73219 7.95238 8.18397 8.47919 8.52787 8.78918 8.83459 9.28914 9.77962 10.20877 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.003475 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.304702 B = 8055.893495 C = 8418.880887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.173 3.827 3 H 0.098 0.902 4 C -0.121 4.121 5 C 0.467 3.533 6 O -0.491 6.491 7 O -0.524 6.524 8 N -0.745 5.745 9 C 0.700 3.300 10 O -0.533 6.533 11 N -0.668 5.668 12 C 0.354 3.646 13 C -0.236 4.236 14 C 0.144 3.856 15 C -0.460 4.460 16 H 0.080 0.920 17 C 0.074 3.926 18 N -0.805 5.805 19 Si 0.917 3.083 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.278 4.278 24 C 0.116 3.884 25 N -0.547 5.547 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.409 0.591 32 H 0.387 0.613 33 H 0.403 0.597 34 H 0.133 0.867 35 H 0.279 0.721 36 H 0.102 0.898 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -4.173 -16.188 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.067 3.933 3 H 0.116 0.884 4 C -0.159 4.159 5 C 0.308 3.692 6 O -0.376 6.376 7 O -0.337 6.337 8 N -0.403 5.403 9 C 0.399 3.601 10 O -0.404 6.404 11 N -0.316 5.316 12 C 0.128 3.872 13 C -0.261 4.261 14 C 0.135 3.865 15 C -0.492 4.492 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.432 5.432 19 Si 0.742 3.258 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.302 4.302 24 C -0.038 4.038 25 N -0.265 5.265 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.268 0.732 32 H 0.220 0.780 33 H 0.237 0.763 34 H 0.151 0.849 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.168 -2.701 -16.766 17.120 hybrid contribution 1.188 -1.868 1.464 2.654 sum -0.980 -4.569 -15.302 15.999 Atomic orbital electron populations 1.22207 0.94521 1.02287 1.03176 1.20497 0.93662 0.97807 0.81295 0.88438 1.21770 0.87862 1.04910 1.01370 1.23489 0.91774 0.75451 0.78515 1.90868 1.70120 1.38598 1.38023 1.84513 1.27159 1.73126 1.48900 1.45116 1.73179 1.12995 1.08963 1.15947 0.78847 0.85365 0.79904 1.90986 1.52968 1.13216 1.83255 1.42533 1.68505 1.10974 1.09576 1.18007 0.96189 0.89061 0.83981 1.21695 1.13000 1.01090 0.90338 1.17585 0.86414 0.90400 0.92078 1.19494 1.26820 1.00029 1.02898 0.90236 1.25902 0.93129 0.96705 0.98518 1.69723 1.24496 1.13922 1.35072 0.86228 0.79666 0.78347 0.81597 1.19000 1.20374 1.18936 1.21759 1.13854 0.96176 0.98379 1.21488 0.96178 0.97788 0.88368 1.67179 1.24109 1.04789 1.30472 0.92376 0.90979 0.91654 0.87219 0.86243 0.73174 0.78010 0.76314 0.84915 0.90991 0.87977 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 2 C 0.17 2.03 2.14 -67.93 -0.15 1.89 16 3 H 0.10 1.46 7.39 -51.93 -0.38 1.08 16 4 C -0.12 -0.92 5.35 -27.88 -0.15 -1.07 16 5 C 0.47 4.80 8.19 36.01 0.29 5.09 16 6 O -0.49 -7.50 16.11 -18.75 -0.30 -7.80 16 7 O -0.52 -4.00 13.42 -39.24 -0.53 -4.53 16 8 N -0.75 -10.57 4.22 -58.68 -0.25 -10.81 16 9 C 0.70 14.15 8.48 -86.92 -0.74 13.42 16 10 O -0.53 -13.10 14.30 5.30 0.08 -13.02 16 11 N -0.67 -13.90 5.40 -15.86 -0.09 -13.98 16 12 C 0.35 8.98 7.40 -154.67 -1.15 7.83 16 13 C -0.24 -6.15 8.60 -38.45 -0.33 -6.49 16 14 C 0.14 3.88 5.57 -106.55 -0.59 3.28 16 15 C -0.46 -12.11 9.12 -37.65 -0.34 -12.46 16 16 H 0.08 2.00 7.85 -52.49 -0.41 1.58 16 17 C 0.07 1.83 5.41 -17.34 -0.09 1.74 16 18 N -0.81 -20.34 10.69 55.55 0.59 -19.75 16 19 Si 0.92 18.47 29.56 -169.99 -5.02 13.44 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 23 C -0.28 -7.02 9.85 -39.07 -0.38 -7.41 16 24 C 0.12 2.89 11.10 -18.05 -0.20 2.69 16 25 N -0.55 -14.61 7.90 -12.75 -0.10 -14.71 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.41 1.77 9.10 45.56 0.41 2.19 16 32 H 0.39 4.33 8.62 -40.82 -0.35 3.98 16 33 H 0.40 6.89 8.72 -40.82 -0.36 6.54 16 34 H 0.13 3.45 6.25 -52.49 -0.33 3.12 16 35 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 36 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16 37 H 0.12 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -36.38 326.66 -7.68 -44.06 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -3.51 Total: 14.96 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -3.48 Total: 7.23 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.16 Total: -59.26 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.75 Total: -25.35 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.38 -7.68 -44.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599887609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.421 kcal (2) G-P(sol) polarization free energy of solvation -36.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds