Wall clock time and date at job start Tue Mar 31 2020 08:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47797 * 2 1 4 4 C 1.53000 * 109.46843 * 239.99732 * 2 1 3 5 5 C 1.50701 * 109.47494 * 174.99988 * 4 2 1 6 6 O 1.20831 * 119.99536 * 0.02562 * 5 4 2 7 7 O 1.34224 * 120.00334 * 180.02562 * 5 4 2 8 8 N 1.46502 * 109.47319 * 120.00175 * 2 1 3 9 9 C 1.34772 * 120.00117 * 274.99983 * 8 2 1 10 10 O 1.21580 * 119.99946 * 359.97438 * 9 8 2 11 11 N 1.34777 * 119.99919 * 179.97438 * 9 8 2 12 12 C 1.39466 * 119.99582 * 175.05874 * 11 9 8 13 13 C 1.38647 * 119.64245 * 174.21890 * 12 11 9 14 14 C 1.40826 * 118.66903 * 179.71896 * 13 12 11 15 15 C 1.41538 * 120.99312 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00344 * 147.47416 * 15 14 13 17 17 C 1.40032 * 120.00277 * 327.47337 * 15 14 13 18 18 N 1.30749 * 119.99828 * 359.81920 * 17 15 14 19 19 Si 1.86803 * 120.00143 * 179.82267 * 17 15 14 20 20 H 1.48498 * 109.47116 * 60.00023 * 19 17 15 21 21 H 1.48500 * 109.46965 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46972 * 299.99577 * 19 17 15 23 23 C 1.41160 * 118.00569 * 0.02562 * 14 13 12 24 24 C 1.36594 * 119.13059 * 0.02562 * 23 14 13 25 25 N 1.32061 * 121.25622 * 359.97438 * 24 23 14 26 26 H 1.08994 * 109.47797 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46598 * 299.99775 * 1 2 3 28 28 H 1.08997 * 109.46974 * 59.99309 * 1 2 3 29 29 H 1.08995 * 109.47682 * 295.00569 * 4 2 1 30 30 H 1.09006 * 109.46613 * 55.00539 * 4 2 1 31 31 H 0.96702 * 116.99992 * 180.02562 * 7 5 4 32 32 H 0.97002 * 119.99684 * 94.99250 * 8 2 1 33 33 H 0.96998 * 119.99976 * 355.06156 * 11 9 8 34 34 H 1.07994 * 120.66688 * 359.74394 * 13 12 11 35 35 H 0.96994 * 119.99357 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.43546 * 179.97438 * 23 14 13 37 37 H 1.07998 * 119.36918 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6151 -1.3129 6 8 4.1427 -0.0235 -0.4475 7 8 4.2119 -1.1775 -2.3308 8 7 2.0184 -0.6906 1.1961 9 6 2.1471 -0.0184 2.3571 10 8 1.8584 1.1614 2.4116 11 7 2.5959 -0.6539 3.4576 12 6 2.8272 0.0631 4.6313 13 6 3.1727 -0.6132 5.7912 14 6 3.4075 0.1316 6.9631 15 6 3.7624 -0.5083 8.1746 16 1 4.4187 -0.0131 8.8749 17 6 3.2626 -1.7837 8.4654 18 7 2.4652 -2.3819 7.6193 19 14 3.7351 -2.6304 10.0621 20 1 3.2929 -1.8011 11.2118 21 1 3.0783 -3.9605 10.1302 22 1 5.2092 -2.8025 10.1137 23 6 3.2771 1.5355 6.8935 24 6 2.9313 2.1131 5.7050 25 7 2.7184 1.3835 4.6249 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.7515 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1369 31 1 5.1743 -1.0832 -2.3282 32 1 2.2490 -1.6318 1.1525 33 1 2.7581 -1.6099 3.4334 34 1 3.2604 -1.6896 5.7959 35 1 2.1194 -3.2654 7.8206 36 1 3.4478 2.1449 7.7687 37 1 2.8301 3.1867 5.6474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599887609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:58 Heat of formation + Delta-G solvation = -110.625852 kcal Electronic energy + Delta-G solvation = -22964.237991 eV Core-core repulsion = 19319.600017 eV Total energy + Delta-G solvation = -3644.637974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62883 -41.05306 -39.83032 -37.43632 -36.67469 -35.95345 -35.44390 -32.74736 -32.30130 -30.13184 -29.27592 -27.88714 -24.46900 -23.78946 -23.18483 -21.79395 -21.47515 -19.62124 -19.42420 -18.95827 -17.84216 -17.44219 -17.28181 -16.87987 -16.46647 -16.05100 -15.98282 -15.91072 -15.09725 -14.80465 -14.54285 -14.41067 -14.28978 -13.75316 -13.43548 -13.22560 -13.14652 -12.85226 -12.84009 -12.67018 -12.47215 -12.13178 -12.00470 -11.88948 -11.56283 -11.46810 -11.22632 -11.17090 -10.06106 -9.82738 -9.63987 -8.81727 -8.53183 -6.58222 0.83264 1.02755 1.29229 1.41925 1.53502 1.57722 1.67774 2.16174 2.22699 2.35939 2.87873 3.20461 3.57372 3.74384 4.12218 4.15337 4.24133 4.53133 4.62601 4.69009 4.70574 4.85225 4.85860 4.91261 5.06315 5.11496 5.27037 5.36317 5.49591 5.61934 5.67008 5.69388 5.86787 6.01607 6.28572 6.57448 6.80684 6.86007 7.01947 7.05104 7.66454 7.90961 8.35375 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.003475 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.304702 B = 8055.893495 C = 8418.880887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 H 0.058 0.942 4 C -0.109 4.109 5 C 0.472 3.528 6 O -0.552 6.552 7 O -0.513 6.513 8 N -0.723 5.723 9 C 0.694 3.306 10 O -0.582 6.582 11 N -0.663 5.663 12 C 0.350 3.650 13 C -0.251 4.251 14 C 0.115 3.885 15 C -0.490 4.490 16 H 0.083 0.917 17 C 0.034 3.966 18 N -0.828 5.828 19 Si 0.993 3.007 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.258 1.258 23 C -0.290 4.290 24 C 0.109 3.891 25 N -0.575 5.575 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.095 0.905 29 H 0.147 0.853 30 H 0.158 0.842 31 H 0.424 0.576 32 H 0.405 0.595 33 H 0.418 0.582 34 H 0.129 0.871 35 H 0.289 0.711 36 H 0.118 0.882 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 -6.186 -17.267 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.062 3.938 3 H 0.076 0.924 4 C -0.146 4.146 5 C 0.316 3.684 6 O -0.442 6.442 7 O -0.327 6.327 8 N -0.380 5.380 9 C 0.394 3.606 10 O -0.457 6.457 11 N -0.312 5.312 12 C 0.122 3.878 13 C -0.277 4.277 14 C 0.107 3.893 15 C -0.521 4.521 16 H 0.101 0.899 17 C -0.181 4.181 18 N -0.454 5.454 19 Si 0.813 3.187 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.183 1.183 23 C -0.314 4.314 24 C -0.044 4.044 25 N -0.294 5.294 26 H 0.101 0.899 27 H 0.049 0.951 28 H 0.114 0.886 29 H 0.164 0.836 30 H 0.175 0.825 31 H 0.285 0.715 32 H 0.241 0.759 33 H 0.255 0.745 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.136 0.864 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.608 -4.779 -17.941 18.748 hybrid contribution 1.320 -1.267 1.667 2.475 sum -1.287 -6.046 -16.274 17.408 Atomic orbital electron populations 1.22132 0.92876 1.03680 1.02644 1.20700 0.94886 0.96361 0.81891 0.92360 1.21810 0.85923 1.06778 1.00118 1.23999 0.92820 0.73907 0.77709 1.90870 1.71487 1.41449 1.40416 1.84480 1.28541 1.72108 1.47532 1.44983 1.71622 1.13680 1.07752 1.16193 0.78430 0.85043 0.80915 1.90943 1.55053 1.15477 1.84181 1.42453 1.68325 1.11588 1.08864 1.18239 0.95276 0.89011 0.85242 1.21664 1.14483 1.00840 0.90737 1.18025 0.86992 0.91457 0.92850 1.19806 1.27782 1.01457 1.03069 0.89861 1.26818 0.92455 0.96664 1.02121 1.69778 1.24391 1.14473 1.36780 0.85084 0.79550 0.77357 0.76665 1.18679 1.19109 1.18268 1.21946 1.14270 0.95974 0.99165 1.21939 0.95363 0.99059 0.88054 1.67303 1.25282 1.05564 1.31284 0.89922 0.95125 0.88591 0.83567 0.82488 0.71495 0.75933 0.74530 0.85295 0.90034 0.86378 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.48 71.98 0.68 -2.17 16 2 C 0.17 3.71 2.14 44.99 0.10 3.81 16 3 H 0.06 1.80 7.39 -2.39 -0.02 1.78 16 4 C -0.11 -1.27 5.35 29.85 0.16 -1.11 16 5 C 0.47 8.80 8.19 71.24 0.58 9.38 16 6 O -0.55 -16.92 16.11 21.95 0.35 -16.57 16 7 O -0.51 -6.46 13.42 -51.36 -0.69 -7.15 16 8 N -0.72 -20.13 4.22 -457.83 -1.93 -22.06 16 9 C 0.69 28.80 8.48 179.06 1.52 30.31 16 10 O -0.58 -29.78 14.30 -3.97 -0.06 -29.83 16 11 N -0.66 -28.27 5.40 -322.36 -1.74 -30.01 16 12 C 0.35 18.32 7.40 132.76 0.98 19.30 16 13 C -0.25 -13.54 8.60 23.00 0.20 -13.35 16 14 C 0.12 6.38 5.57 -21.12 -0.12 6.26 16 15 C -0.49 -26.09 9.12 23.52 0.21 -25.88 16 16 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 17 C 0.03 1.68 5.41 85.29 0.46 2.14 16 18 N -0.83 -41.80 10.69 21.84 0.23 -41.57 16 19 Si 0.99 37.06 29.56 68.60 2.03 39.09 16 20 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 21 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 23 C -0.29 -14.98 9.85 22.60 0.22 -14.76 16 24 C 0.11 5.58 11.10 84.27 0.94 6.52 16 25 N -0.57 -31.70 7.90 -194.26 -1.53 -33.24 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.16 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.42 2.83 9.10 -74.06 -0.67 2.16 16 32 H 0.41 8.38 8.62 -92.71 -0.80 7.58 16 33 H 0.42 14.49 8.72 -92.71 -0.81 13.68 16 34 H 0.13 6.90 6.25 -2.91 -0.02 6.88 16 35 H 0.29 13.13 8.29 -92.71 -0.77 12.36 16 36 H 0.12 5.53 8.06 -2.91 -0.02 5.51 16 37 H 0.15 6.52 8.06 -2.91 -0.02 6.50 16 Total: -1.00 -83.35 326.66 1.47 -81.89 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -1.13 Total: 39.00 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 5.94 Total: 20.45 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -4.97 Total: -126.88 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.39 Total: -53.55 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Total: -83.35 1.47 -81.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599887609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.738 kcal (2) G-P(sol) polarization free energy of solvation -83.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds