Wall clock time and date at job start Tue Mar 31 2020 08:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47038 * 2 1 4 4 C 1.50700 * 109.47276 * 120.00468 * 2 1 3 5 5 O 1.21291 * 120.00117 * 108.29966 * 4 2 1 6 6 N 1.34778 * 119.99715 * 288.30132 * 4 2 1 7 7 C 1.37097 * 120.00204 * 3.69663 * 6 4 2 8 8 H 1.07998 * 120.00088 * 125.92934 * 7 6 4 9 9 C 1.38953 * 119.99820 * 305.92744 * 7 6 4 10 10 N 1.31405 * 120.00072 * 337.10036 * 9 7 6 11 11 Si 1.86807 * 119.99729 * 157.10571 * 9 7 6 12 12 H 1.48499 * 109.47034 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.46875 * 120.00029 * 11 9 7 14 14 H 1.48501 * 109.46931 * 239.99699 * 11 9 7 15 15 C 1.46503 * 119.99837 * 183.69427 * 6 4 2 16 16 C 1.52997 * 109.47340 * 267.08416 * 15 6 4 17 17 C 1.50699 * 109.47290 * 180.02562 * 16 15 6 18 18 O 1.20827 * 119.99899 * 359.97438 * 17 16 15 19 19 O 1.34220 * 120.00286 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.46748 * 240.00363 * 2 1 3 21 21 C 1.38386 * 120.00384 * 324.99885 * 20 2 1 22 22 N 1.32129 * 120.00171 * 179.97438 * 21 20 2 23 23 C 1.32157 * 119.99630 * 359.97438 * 22 21 20 24 24 C 1.38343 * 120.00292 * 359.97438 * 23 22 21 25 25 N 1.32123 * 119.99828 * 144.72455 * 20 2 1 26 26 H 1.08999 * 109.46658 * 302.46565 * 1 2 3 27 27 H 1.08994 * 109.47418 * 62.46782 * 1 2 3 28 28 H 1.09001 * 109.46929 * 182.46912 * 1 2 3 29 29 H 0.97007 * 120.00185 * 179.97438 * 10 9 7 30 30 H 1.09006 * 109.46536 * 27.08406 * 15 6 4 31 31 H 1.08994 * 109.46817 * 147.07669 * 15 6 4 32 32 H 1.08999 * 109.46777 * 299.99945 * 16 15 6 33 33 H 1.08998 * 109.47061 * 59.99773 * 16 15 6 34 34 H 0.96696 * 117.00379 * 179.97438 * 19 17 16 35 35 H 1.08005 * 120.00293 * 359.97438 * 21 20 2 36 36 H 1.07997 * 119.99575 * 180.02562 * 23 22 21 37 37 H 1.07996 * 120.00124 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5456 -1.8051 1.1316 6 7 1.9115 -0.1296 2.4405 7 6 1.2641 1.0727 2.5622 8 1 0.4466 1.1777 3.2602 9 6 1.6596 2.1563 1.7874 10 7 2.8759 2.2007 1.2922 11 14 0.4621 3.5498 1.4501 12 1 -0.8336 3.2611 2.1156 13 1 1.0192 4.8202 1.9801 14 1 0.2489 3.6756 -0.0141 15 6 2.4719 -0.7830 3.6260 16 6 1.3969 -1.6472 4.2882 17 6 1.9732 -2.3188 5.5079 18 8 3.1257 -2.1265 5.8157 19 8 1.2063 -3.1307 6.2524 20 6 2.0323 -0.7103 -1.2305 21 6 1.3374 -1.7954 -1.7353 22 7 1.7775 -2.4179 -2.8145 23 6 2.8811 -2.0039 -3.4121 24 6 3.5753 -0.9185 -2.9082 25 7 3.1332 -0.2938 -1.8307 26 1 -0.3632 0.5517 0.8671 27 1 -0.3634 0.4750 -0.9112 28 1 -0.3633 -1.0267 0.0443 29 1 3.1519 2.9570 0.7510 30 1 3.3125 -1.4113 3.3312 31 1 2.8142 -0.0253 4.3308 32 1 0.5564 -1.0189 4.5828 33 1 1.0547 -2.4049 3.5833 34 1 1.6203 -3.5391 7.0250 35 1 0.4353 -2.1335 -1.2471 36 1 3.2406 -2.5124 -4.2945 37 1 4.4769 -0.5799 -3.3968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603138230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:48 Heat of formation + Delta-G solvation = -71.894731 kcal Electronic energy + Delta-G solvation = -23972.395021 eV Core-core repulsion = 20329.436554 eV Total energy + Delta-G solvation = -3642.958467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.71147 -39.97504 -38.73457 -35.96234 -34.92977 -34.31222 -33.43509 -32.28486 -30.40766 -29.33260 -25.35471 -25.01599 -24.04657 -23.93419 -21.90318 -20.48470 -19.45291 -17.88524 -17.25663 -16.88324 -16.60874 -16.36123 -15.76176 -15.47169 -15.12072 -14.76314 -14.36159 -13.98674 -13.82768 -13.46887 -12.96601 -12.88372 -12.75980 -12.36323 -12.00829 -11.61597 -11.33538 -11.30743 -11.21523 -11.16709 -11.11988 -10.90135 -10.70144 -10.59299 -10.50170 -10.30012 -10.26373 -9.00899 -8.87634 -8.52711 -8.26515 -7.51714 -6.54471 -4.37850 1.24825 1.62668 2.50674 3.02396 3.13303 3.16298 3.28902 3.85389 4.02550 4.15065 4.46336 4.67308 4.72907 4.88919 4.99957 5.22036 5.39815 5.58141 5.63927 5.68030 5.77787 5.82188 5.97046 6.08205 6.13201 6.22320 6.43943 6.60054 6.67207 6.80157 6.84133 6.86548 7.04421 7.29707 7.74501 7.80170 8.14707 8.29428 8.45216 8.76728 9.38425 9.82917 10.47765 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.006447 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.054737 B = 4342.052692 C = 5884.049130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 H 0.149 0.851 4 C 0.529 3.471 5 O -0.603 6.603 6 N -0.448 5.448 7 C -0.355 4.355 8 H 0.088 0.912 9 C 0.054 3.946 10 N -0.836 5.836 11 Si 0.895 3.105 12 H -0.261 1.261 13 H -0.279 1.279 14 H -0.272 1.272 15 C 0.127 3.873 16 C -0.124 4.124 17 C 0.483 3.517 18 O -0.518 6.518 19 O -0.523 6.523 20 C 0.131 3.869 21 C 0.059 3.941 22 N -0.444 5.444 23 C 0.023 3.977 24 C 0.047 3.953 25 N -0.428 5.428 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.275 0.725 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.403 0.597 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 -3.557 -1.607 6.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 H 0.165 0.835 4 C 0.319 3.681 5 O -0.488 6.488 6 N -0.167 5.167 7 C -0.482 4.482 8 H 0.105 0.895 9 C -0.155 4.155 10 N -0.470 5.470 11 Si 0.720 3.280 12 H -0.185 1.185 13 H -0.204 1.204 14 H -0.198 1.198 15 C 0.004 3.996 16 C -0.163 4.163 17 C 0.326 3.674 18 O -0.406 6.406 19 O -0.334 6.334 20 C -0.010 4.010 21 C -0.101 4.101 22 N -0.158 5.158 23 C -0.136 4.136 24 C -0.113 4.113 25 N -0.142 5.142 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.261 0.739 35 H 0.182 0.818 36 H 0.179 0.821 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.422 -3.723 -2.018 6.123 hybrid contribution 0.052 0.554 0.328 0.646 sum -4.370 -3.169 -1.690 5.657 Atomic orbital electron populations 1.21805 0.93010 1.01834 1.03203 1.20514 0.96495 1.04306 0.87800 0.83459 1.19883 0.79512 0.84081 0.84651 1.90545 1.49302 1.22016 1.86974 1.43156 1.50971 1.18991 1.03609 1.19254 1.14201 0.86968 1.27770 0.89463 1.25626 0.95050 0.97767 0.97046 1.70049 1.14891 1.31215 1.30838 0.86383 0.81357 0.81130 0.79117 1.18500 1.20420 1.19767 1.21135 0.93571 0.95798 0.89144 1.21836 1.02233 1.00327 0.91893 1.23775 0.84171 0.75534 0.83944 1.90704 1.19032 1.60469 1.70372 1.84581 1.48005 1.59258 1.41598 1.22086 0.90347 0.93073 0.95532 1.23535 1.00805 0.92937 0.92825 1.68372 1.12285 1.27417 1.07742 1.23567 0.93027 0.96382 1.00644 1.23708 1.00174 0.93937 0.93471 1.68347 1.11035 1.28540 1.06311 0.89032 0.93079 0.93055 0.91415 0.91101 0.90508 0.87555 0.87878 0.73946 0.81810 0.82146 0.82067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.28 37.16 0.31 -2.22 16 2 C -0.07 -1.51 2.15 -92.92 -0.20 -1.71 16 3 H 0.15 3.53 4.29 -51.93 -0.22 3.31 16 4 C 0.53 12.82 6.53 -10.99 -0.07 12.74 16 5 O -0.60 -15.94 15.58 5.55 0.09 -15.86 16 6 N -0.45 -10.43 2.41 -114.81 -0.28 -10.70 16 7 C -0.35 -8.10 7.15 -14.93 -0.11 -8.21 16 8 H 0.09 1.89 7.93 -52.49 -0.42 1.47 16 9 C 0.05 1.24 3.10 -17.47 -0.05 1.18 16 10 N -0.84 -21.10 11.61 55.50 0.64 -20.46 16 11 Si 0.90 17.75 29.02 -169.99 -4.93 12.81 16 12 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 13 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 15 C 0.13 2.74 4.68 -4.04 -0.02 2.72 16 16 C -0.12 -2.13 6.13 -27.88 -0.17 -2.30 16 17 C 0.48 7.88 8.33 36.01 0.30 8.17 16 18 O -0.52 -10.00 16.74 -18.75 -0.31 -10.31 16 19 O -0.52 -6.60 13.42 -39.23 -0.53 -7.13 16 20 C 0.13 2.75 5.10 -82.41 -0.42 2.33 16 21 C 0.06 1.12 10.23 -17.37 -0.18 0.94 16 22 N -0.44 -7.89 10.50 -13.06 -0.14 -8.03 16 23 C 0.02 0.35 11.22 -17.37 -0.20 0.16 16 24 C 0.05 0.78 11.22 -17.37 -0.19 0.58 16 25 N -0.43 -8.98 10.42 -9.29 -0.10 -9.07 16 26 H 0.09 1.67 5.66 -51.93 -0.29 1.37 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.82 6.65 -51.93 -0.35 0.48 16 29 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.07 1.68 7.35 -51.93 -0.38 1.29 16 31 H 0.08 1.68 8.02 -51.93 -0.42 1.26 16 32 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 34 H 0.40 3.20 9.10 45.56 0.41 3.62 16 35 H 0.16 2.77 6.39 -52.48 -0.34 2.43 16 36 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 319.37 15.07 4.81 4.81 Total: -1.00 -31.88 319.37 -4.99 -36.87 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -3.25 Total: 12.67 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: -1.00 Total: 14.40 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.13 Total: -48.27 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.75 Total: -33.30 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -4.93 Total: 12.81 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.88 -4.99 -36.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603138230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.024 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds