Wall clock time and date at job start Tue Mar 31 2020 08:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47038 * 2 1 4 4 C 1.50700 * 109.47276 * 120.00468 * 2 1 3 5 5 O 1.21291 * 120.00117 * 108.29966 * 4 2 1 6 6 N 1.34778 * 119.99715 * 288.30132 * 4 2 1 7 7 C 1.37097 * 120.00204 * 3.69663 * 6 4 2 8 8 H 1.07998 * 120.00088 * 125.92934 * 7 6 4 9 9 C 1.38953 * 119.99820 * 305.92744 * 7 6 4 10 10 N 1.31405 * 120.00072 * 337.10036 * 9 7 6 11 11 Si 1.86807 * 119.99729 * 157.10571 * 9 7 6 12 12 H 1.48499 * 109.47034 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.46875 * 120.00029 * 11 9 7 14 14 H 1.48501 * 109.46931 * 239.99699 * 11 9 7 15 15 C 1.46503 * 119.99837 * 183.69427 * 6 4 2 16 16 C 1.52997 * 109.47340 * 267.08416 * 15 6 4 17 17 C 1.50699 * 109.47290 * 180.02562 * 16 15 6 18 18 O 1.20827 * 119.99899 * 359.97438 * 17 16 15 19 19 O 1.34220 * 120.00286 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.46748 * 240.00363 * 2 1 3 21 21 C 1.38386 * 120.00384 * 324.99885 * 20 2 1 22 22 N 1.32129 * 120.00171 * 179.97438 * 21 20 2 23 23 C 1.32157 * 119.99630 * 359.97438 * 22 21 20 24 24 C 1.38343 * 120.00292 * 359.97438 * 23 22 21 25 25 N 1.32123 * 119.99828 * 144.72455 * 20 2 1 26 26 H 1.08999 * 109.46658 * 302.46565 * 1 2 3 27 27 H 1.08994 * 109.47418 * 62.46782 * 1 2 3 28 28 H 1.09001 * 109.46929 * 182.46912 * 1 2 3 29 29 H 0.97007 * 120.00185 * 179.97438 * 10 9 7 30 30 H 1.09006 * 109.46536 * 27.08406 * 15 6 4 31 31 H 1.08994 * 109.46817 * 147.07669 * 15 6 4 32 32 H 1.08999 * 109.46777 * 299.99945 * 16 15 6 33 33 H 1.08998 * 109.47061 * 59.99773 * 16 15 6 34 34 H 0.96696 * 117.00379 * 179.97438 * 19 17 16 35 35 H 1.08005 * 120.00293 * 359.97438 * 21 20 2 36 36 H 1.07997 * 119.99575 * 180.02562 * 23 22 21 37 37 H 1.07996 * 120.00124 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5456 -1.8051 1.1316 6 7 1.9115 -0.1296 2.4405 7 6 1.2641 1.0727 2.5622 8 1 0.4466 1.1777 3.2602 9 6 1.6596 2.1563 1.7874 10 7 2.8759 2.2007 1.2922 11 14 0.4621 3.5498 1.4501 12 1 -0.8336 3.2611 2.1156 13 1 1.0192 4.8202 1.9801 14 1 0.2489 3.6756 -0.0141 15 6 2.4719 -0.7830 3.6260 16 6 1.3969 -1.6472 4.2882 17 6 1.9732 -2.3188 5.5079 18 8 3.1257 -2.1265 5.8157 19 8 1.2063 -3.1307 6.2524 20 6 2.0323 -0.7103 -1.2305 21 6 1.3374 -1.7954 -1.7353 22 7 1.7775 -2.4179 -2.8145 23 6 2.8811 -2.0039 -3.4121 24 6 3.5753 -0.9185 -2.9082 25 7 3.1332 -0.2938 -1.8307 26 1 -0.3632 0.5517 0.8671 27 1 -0.3634 0.4750 -0.9112 28 1 -0.3633 -1.0267 0.0443 29 1 3.1519 2.9570 0.7510 30 1 3.3125 -1.4113 3.3312 31 1 2.8142 -0.0253 4.3308 32 1 0.5564 -1.0189 4.5828 33 1 1.0547 -2.4049 3.5833 34 1 1.6203 -3.5391 7.0250 35 1 0.4353 -2.1335 -1.2471 36 1 3.2406 -2.5124 -4.2945 37 1 4.4769 -0.5799 -3.3968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603138230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:47 Heat of formation + Delta-G solvation = -95.420674 kcal Electronic energy + Delta-G solvation = -23973.415182 eV Core-core repulsion = 20329.436554 eV Total energy + Delta-G solvation = -3643.978628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12374 -41.31771 -40.43303 -37.21973 -36.71314 -35.83732 -34.88722 -33.93494 -32.03186 -30.72496 -27.10315 -26.51287 -25.57207 -25.32104 -23.38025 -21.89549 -21.20892 -19.20273 -18.84242 -18.36645 -17.95897 -17.78139 -17.19026 -16.97846 -16.76948 -16.34481 -15.84453 -15.56804 -15.39944 -14.87392 -14.50520 -14.35681 -14.25055 -13.80443 -13.54589 -13.26488 -12.97124 -12.83451 -12.74179 -12.56060 -12.53488 -12.40238 -12.18026 -12.13918 -12.07410 -11.89445 -11.66887 -10.78186 -10.37817 -9.99866 -9.86945 -9.33048 -8.32771 -6.21519 -0.09340 0.24465 1.19386 1.44852 1.52338 1.63270 1.99404 2.09777 2.38009 2.73827 2.96344 3.08443 3.32036 3.43501 3.67619 3.89982 3.93928 4.06022 4.28148 4.35690 4.42610 4.48821 4.54568 4.60694 4.68235 4.80758 4.88709 5.02126 5.10547 5.34714 5.44038 5.49239 5.52833 5.59359 6.00783 6.40291 6.64116 6.93119 6.98373 7.00651 7.56234 8.02639 8.70593 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.006447 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.054737 B = 4342.052692 C = 5884.049130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 H 0.126 0.874 4 C 0.518 3.482 5 O -0.637 6.637 6 N -0.453 5.453 7 C -0.360 4.360 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.876 5.876 11 Si 0.953 3.047 12 H -0.239 1.239 13 H -0.286 1.286 14 H -0.272 1.272 15 C 0.128 3.872 16 C -0.112 4.112 17 C 0.496 3.504 18 O -0.554 6.554 19 O -0.507 6.507 20 C 0.100 3.900 21 C 0.052 3.948 22 N -0.454 5.454 23 C 0.039 3.961 24 C 0.043 3.957 25 N -0.470 5.470 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.273 0.727 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.427 0.573 35 H 0.176 0.824 36 H 0.211 0.789 37 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.621 -3.990 -2.302 8.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 H 0.143 0.857 4 C 0.308 3.692 5 O -0.525 6.525 6 N -0.172 5.172 7 C -0.487 4.487 8 H 0.121 0.879 9 C -0.183 4.183 10 N -0.512 5.512 11 Si 0.775 3.225 12 H -0.162 1.162 13 H -0.212 1.212 14 H -0.198 1.198 15 C 0.004 3.996 16 C -0.151 4.151 17 C 0.339 3.661 18 O -0.445 6.445 19 O -0.320 6.320 20 C -0.040 4.040 21 C -0.106 4.106 22 N -0.169 5.169 23 C -0.121 4.121 24 C -0.117 4.117 25 N -0.186 5.186 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.123 0.877 34 H 0.289 0.711 35 H 0.193 0.807 36 H 0.228 0.772 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.138 -4.172 -2.645 7.879 hybrid contribution 0.687 0.613 0.526 1.060 sum -5.451 -3.559 -2.119 6.846 Atomic orbital electron populations 1.21794 0.90511 1.03078 1.03928 1.20416 0.98639 1.02615 0.87271 0.85698 1.20418 0.79254 0.83920 0.85591 1.90497 1.50903 1.23544 1.87525 1.43369 1.50576 1.19279 1.03962 1.19622 1.14361 0.86727 1.27968 0.87935 1.26316 0.95902 0.99784 0.96329 1.70159 1.17028 1.32048 1.31924 0.85499 0.80225 0.77798 0.78931 1.16204 1.21226 1.19755 1.21057 0.94242 0.95555 0.88762 1.21568 1.01088 1.00125 0.92325 1.23398 0.83501 0.75424 0.83740 1.90706 1.20542 1.61907 1.71339 1.84500 1.47084 1.58162 1.42275 1.22029 0.91434 0.94535 0.96003 1.23632 1.01203 0.92461 0.93331 1.68462 1.13404 1.27458 1.07591 1.24366 0.91432 0.95347 1.01000 1.24405 1.01189 0.93876 0.92274 1.68270 1.11681 1.30383 1.08242 0.89354 0.91248 0.91472 0.91727 0.94312 0.91575 0.85348 0.87718 0.71106 0.80674 0.77231 0.78401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 8.28 71.98 0.60 -4.16 16 2 C -0.07 -2.97 2.15 -12.28 -0.03 -2.99 16 3 H 0.13 6.14 4.29 -2.39 -0.01 6.13 16 4 C 0.52 25.71 6.53 87.66 0.57 26.28 16 5 O -0.64 -34.83 15.58 -3.06 -0.05 -34.87 16 6 N -0.45 -21.53 2.41 -635.54 -1.53 -23.06 16 7 C -0.36 -16.42 7.15 84.04 0.60 -15.82 16 8 H 0.10 4.29 7.93 -2.91 -0.02 4.27 16 9 C 0.02 1.01 3.10 84.93 0.26 1.27 16 10 N -0.88 -45.48 11.61 21.66 0.25 -45.23 16 11 Si 0.95 35.90 29.02 68.60 1.99 37.89 16 12 H -0.24 -8.12 7.11 99.48 0.71 -7.42 16 13 H -0.29 -11.07 7.11 99.48 0.71 -10.37 16 14 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 15 C 0.13 5.65 4.68 86.38 0.40 6.06 16 16 C -0.11 -3.82 6.13 29.85 0.18 -3.63 16 17 C 0.50 15.70 8.33 71.24 0.59 16.29 16 18 O -0.55 -21.47 16.74 21.96 0.37 -21.10 16 19 O -0.51 -11.56 13.42 -51.32 -0.69 -12.24 16 20 C 0.10 4.22 5.10 42.55 0.22 4.43 16 21 C 0.05 1.94 10.23 84.68 0.87 2.81 16 22 N -0.45 -15.34 10.50 -195.22 -2.05 -17.39 16 23 C 0.04 1.07 11.22 84.67 0.95 2.02 16 24 C 0.04 1.34 11.22 84.67 0.95 2.29 16 25 N -0.47 -19.81 10.42 -183.30 -1.91 -21.72 16 26 H 0.09 3.11 5.66 -2.39 -0.01 3.09 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.07 2.09 6.65 -2.39 -0.02 2.07 16 29 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16 30 H 0.04 1.93 7.35 -2.38 -0.02 1.92 16 31 H 0.07 3.00 8.02 -2.39 -0.02 2.98 16 32 H 0.13 3.78 8.14 -2.39 -0.02 3.76 16 33 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 34 H 0.43 5.60 9.10 -74.06 -0.67 4.93 16 35 H 0.18 5.81 6.39 -2.91 -0.02 5.79 16 36 H 0.21 3.61 8.06 -2.91 -0.02 3.58 16 37 H 0.20 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -71.76 319.37 3.01 -68.75 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.45 Total: 34.12 kcal Atomic # 6 Polarization: 28.70 SS G_CDS: 6.17 Total: 34.87 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -5.24 Total: -107.41 kcal Atomic # 8 Polarization: -67.85 SS G_CDS: -0.37 Total: -68.22 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 1.99 Total: 37.89 kcal Total: -71.76 3.01 -68.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603138230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.670 kcal (2) G-P(sol) polarization free energy of solvation -71.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds