Wall clock time and date at job start Tue Mar 31 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47174 * 2 1 4 4 H 1.08999 * 109.47341 * 54.99405 * 3 2 1 5 5 N 1.46498 * 109.46981 * 294.99790 * 3 2 1 6 6 C 1.34779 * 120.00278 * 154.99905 * 5 3 2 7 7 O 1.21578 * 119.99654 * 0.02562 * 6 5 3 8 8 N 1.34773 * 120.00421 * 179.97438 * 6 5 3 9 9 C 1.39457 * 120.00206 * 175.45582 * 8 6 5 10 10 C 1.38649 * 119.65051 * 186.29067 * 9 8 6 11 11 C 1.40814 * 118.67625 * 179.97438 * 10 9 8 12 12 C 1.41540 * 120.99862 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99937 * 201.15104 * 12 11 10 14 14 C 1.40025 * 120.00154 * 21.14537 * 12 11 10 15 15 N 1.30743 * 119.99880 * 12.10792 * 14 12 11 16 16 Si 1.86804 * 120.00287 * 192.10763 * 14 12 11 17 17 H 1.48503 * 109.47033 * 89.99910 * 16 14 12 18 18 H 1.48496 * 109.46921 * 209.99852 * 16 14 12 19 19 H 1.48501 * 109.47057 * 330.00120 * 16 14 12 20 20 C 1.41170 * 118.00416 * 359.97438 * 11 10 9 21 21 C 1.36587 * 119.12870 * 0.02562 * 20 11 10 22 22 N 1.32070 * 121.26030 * 359.73409 * 21 20 11 23 23 C 1.50697 * 109.47364 * 174.99916 * 3 2 1 24 24 O 1.20826 * 120.00442 * 119.99600 * 23 3 2 25 25 O 1.34229 * 120.00020 * 300.00053 * 23 3 2 26 26 H 1.08998 * 109.46721 * 60.00405 * 1 2 3 27 27 H 1.09004 * 109.46955 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47383 * 300.00356 * 1 2 3 29 29 H 1.08997 * 109.47383 * 239.99644 * 2 1 3 30 30 H 1.09003 * 109.47158 * 119.99501 * 2 1 3 31 31 H 0.97000 * 120.00392 * 335.00375 * 5 3 2 32 32 H 0.97005 * 119.99803 * 355.46395 * 8 6 5 33 33 H 1.08000 * 120.65737 * 359.97438 * 10 9 8 34 34 H 0.96998 * 120.00159 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.43295 * 180.02562 * 20 11 10 36 36 H 1.08000 * 119.36947 * 180.02562 * 21 20 11 37 37 H 0.96699 * 116.99966 * 180.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6525 2.0974 -1.2518 6 6 1.5256 3.4384 -1.2997 7 8 1.7333 4.1045 -0.3041 8 7 1.1696 4.0410 -2.4514 9 6 0.9460 5.4172 -2.4783 10 6 0.4543 6.0099 -3.6312 11 6 0.2357 7.4010 -3.6355 12 6 -0.2644 8.0567 -4.7858 13 1 -0.1125 9.1187 -4.9109 14 6 -0.9559 7.3287 -5.7617 15 7 -1.3472 6.1067 -5.5108 16 14 -1.3194 8.1033 -7.4223 17 1 -0.2012 7.8181 -8.3569 18 1 -2.5781 7.5355 -7.9684 19 1 -1.4677 9.5722 -7.2615 20 6 0.5301 8.1218 -2.4580 21 6 1.0115 7.4505 -1.3703 22 7 1.2003 6.1437 -1.3998 23 6 3.5419 1.4444 0.1238 24 8 4.2191 1.9416 -0.7444 25 8 4.1274 0.8934 1.1988 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.4871 1.5660 -2.0463 32 1 1.0688 3.5173 -3.2618 33 1 0.2433 5.4164 -4.5085 34 1 -1.8259 5.6022 -6.1869 35 1 0.3768 9.1901 -2.4178 36 1 1.2377 7.9981 -0.4673 37 1 5.0934 0.9190 1.2339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603943724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:36 Heat of formation + Delta-G solvation = -82.340053 kcal Electronic energy + Delta-G solvation = -23077.292108 eV Core-core repulsion = 19433.880698 eV Total energy + Delta-G solvation = -3643.411410 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65460 -39.52116 -38.05251 -36.21514 -35.79942 -34.26977 -33.74110 -32.15738 -30.45666 -28.77423 -27.46466 -25.99332 -22.87197 -22.39053 -21.83922 -20.82859 -20.15441 -18.30252 -18.02235 -17.67927 -16.94740 -16.13771 -15.69286 -15.38573 -15.00166 -14.60401 -14.27975 -14.15051 -13.95453 -13.70450 -13.47867 -12.83900 -12.76396 -12.60245 -12.35594 -12.17971 -11.69893 -11.43473 -11.37550 -11.23978 -11.18253 -10.88735 -10.62746 -10.27618 -10.08980 -9.77615 -9.63519 -9.38834 -9.07162 -7.96696 -7.71236 -6.98456 -6.74377 -4.61928 2.19917 2.56864 2.74853 2.83857 3.01561 3.05109 3.14575 3.28125 3.84627 3.91379 4.39081 4.53341 4.70912 4.73621 4.93294 5.21557 5.39499 5.42721 5.66578 5.74374 5.76021 5.96476 6.03172 6.43860 6.45331 6.56782 6.63890 6.83009 6.94622 7.18530 7.23883 7.45719 7.51648 7.86417 7.89529 8.11378 8.35630 8.48583 8.75095 8.77509 9.13902 9.76502 10.07285 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023821 B = 0.003615 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.144630 B = 7743.518803 C = 8303.846199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.181 3.819 4 H 0.128 0.872 5 N -0.732 5.732 6 C 0.698 3.302 7 O -0.530 6.530 8 N -0.663 5.663 9 C 0.353 3.647 10 C -0.249 4.249 11 C 0.140 3.860 12 C -0.449 4.449 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.791 5.791 16 Si 0.915 3.085 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.285 4.285 21 C 0.119 3.881 22 N -0.554 5.554 23 C 0.461 3.539 24 O -0.501 6.501 25 O -0.519 6.519 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.398 0.602 32 H 0.405 0.595 33 H 0.140 0.860 34 H 0.281 0.719 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 -13.952 5.194 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C 0.072 3.928 4 H 0.146 0.854 5 N -0.391 5.391 6 C 0.398 3.602 7 O -0.401 6.401 8 N -0.310 5.310 9 C 0.127 3.873 10 C -0.275 4.275 11 C 0.131 3.869 12 C -0.481 4.481 13 H 0.100 0.900 14 C -0.143 4.143 15 N -0.417 5.417 16 Si 0.739 3.261 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.309 4.309 21 C -0.035 4.035 22 N -0.273 5.273 23 C 0.300 3.700 24 O -0.386 6.386 25 O -0.331 6.331 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.232 0.768 32 H 0.239 0.761 33 H 0.157 0.843 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 3.004 -13.834 6.554 15.600 hybrid contribution 0.085 0.267 -2.348 2.365 sum 3.089 -13.567 4.206 14.536 Atomic orbital electron populations 1.21771 0.93857 1.02147 1.03145 1.21775 0.97734 0.92557 1.04066 1.20213 0.86319 0.96019 0.90256 0.85438 1.44937 1.75293 1.06157 1.12707 1.16011 0.78522 0.81080 0.84589 1.91013 1.53239 1.62300 1.33544 1.42458 1.71059 1.07112 1.10362 1.17984 0.95632 0.81862 0.91803 1.21781 1.10955 0.96883 0.97844 1.17577 0.86808 0.91002 0.91476 1.19624 1.30146 0.96302 1.01982 0.90037 1.25976 0.93452 0.94615 1.00301 1.69737 1.27505 1.10141 1.34321 0.86196 0.78419 0.80470 0.80970 1.19221 1.20202 1.18511 1.21647 1.14101 0.99710 0.95413 1.21455 0.95886 0.89423 0.96693 1.67189 1.25706 1.06979 1.27399 1.24365 0.93031 0.73906 0.78661 1.90741 1.65514 1.41399 1.40993 1.84514 1.28617 1.74568 1.45358 0.91937 0.92006 0.91971 0.90862 0.88986 0.76753 0.76054 0.84289 0.90833 0.88090 0.86093 0.73443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.80 37.16 0.36 -0.80 16 2 C -0.12 -0.96 5.44 -26.73 -0.15 -1.11 16 3 C 0.18 2.19 2.48 -69.08 -0.17 2.02 16 4 H 0.13 1.69 7.58 -51.93 -0.39 1.29 16 5 N -0.73 -10.27 4.06 -59.82 -0.24 -10.51 16 6 C 0.70 13.88 8.35 -86.92 -0.73 13.15 16 7 O -0.53 -12.81 14.26 5.30 0.08 -12.74 16 8 N -0.66 -13.52 5.39 -15.86 -0.09 -13.61 16 9 C 0.35 8.83 7.42 -154.67 -1.15 7.68 16 10 C -0.25 -6.41 8.67 -38.46 -0.33 -6.75 16 11 C 0.14 3.72 5.65 -106.55 -0.60 3.12 16 12 C -0.45 -11.61 9.15 -37.65 -0.34 -11.95 16 13 H 0.08 2.02 7.88 -52.48 -0.41 1.60 16 14 C 0.07 1.80 5.31 -17.35 -0.09 1.71 16 15 N -0.79 -19.31 10.50 55.55 0.58 -18.72 16 16 Si 0.92 17.93 29.58 -169.99 -5.03 12.90 16 17 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 18 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 C -0.28 -7.12 9.85 -39.07 -0.38 -7.51 16 21 C 0.12 2.95 11.10 -18.05 -0.20 2.75 16 22 N -0.55 -14.64 7.86 -12.75 -0.10 -14.74 16 23 C 0.46 6.22 7.66 36.00 0.28 6.50 16 24 O -0.50 -8.81 17.08 -18.75 -0.32 -9.13 16 25 O -0.52 -5.13 13.23 -39.26 -0.52 -5.65 16 26 H 0.06 0.53 7.75 -51.93 -0.40 0.13 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.61 8.00 -51.93 -0.42 0.19 16 31 H 0.40 4.34 8.62 -40.82 -0.35 3.99 16 32 H 0.40 6.76 8.72 -40.82 -0.36 6.40 16 33 H 0.14 3.54 5.81 -52.49 -0.30 3.23 16 34 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 35 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 36 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 37 H 0.41 2.46 9.10 45.56 0.41 2.87 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -35.37 326.46 -7.70 -43.07 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -3.47 Total: 15.41 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -3.51 Total: 8.81 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.15 Total: -57.59 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.76 Total: -27.52 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.37 -7.70 -43.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603943724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.272 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds