Wall clock time and date at job start Tue Mar 31 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47174 * 2 1 4 4 H 1.08999 * 109.47341 * 54.99405 * 3 2 1 5 5 N 1.46498 * 109.46981 * 294.99790 * 3 2 1 6 6 C 1.34779 * 120.00278 * 154.99905 * 5 3 2 7 7 O 1.21578 * 119.99654 * 0.02562 * 6 5 3 8 8 N 1.34773 * 120.00421 * 179.97438 * 6 5 3 9 9 C 1.39457 * 120.00206 * 175.45582 * 8 6 5 10 10 C 1.38649 * 119.65051 * 186.29067 * 9 8 6 11 11 C 1.40814 * 118.67625 * 179.97438 * 10 9 8 12 12 C 1.41540 * 120.99862 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99937 * 201.15104 * 12 11 10 14 14 C 1.40025 * 120.00154 * 21.14537 * 12 11 10 15 15 N 1.30743 * 119.99880 * 12.10792 * 14 12 11 16 16 Si 1.86804 * 120.00287 * 192.10763 * 14 12 11 17 17 H 1.48503 * 109.47033 * 89.99910 * 16 14 12 18 18 H 1.48496 * 109.46921 * 209.99852 * 16 14 12 19 19 H 1.48501 * 109.47057 * 330.00120 * 16 14 12 20 20 C 1.41170 * 118.00416 * 359.97438 * 11 10 9 21 21 C 1.36587 * 119.12870 * 0.02562 * 20 11 10 22 22 N 1.32070 * 121.26030 * 359.73409 * 21 20 11 23 23 C 1.50697 * 109.47364 * 174.99916 * 3 2 1 24 24 O 1.20826 * 120.00442 * 119.99600 * 23 3 2 25 25 O 1.34229 * 120.00020 * 300.00053 * 23 3 2 26 26 H 1.08998 * 109.46721 * 60.00405 * 1 2 3 27 27 H 1.09004 * 109.46955 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47383 * 300.00356 * 1 2 3 29 29 H 1.08997 * 109.47383 * 239.99644 * 2 1 3 30 30 H 1.09003 * 109.47158 * 119.99501 * 2 1 3 31 31 H 0.97000 * 120.00392 * 335.00375 * 5 3 2 32 32 H 0.97005 * 119.99803 * 355.46395 * 8 6 5 33 33 H 1.08000 * 120.65737 * 359.97438 * 10 9 8 34 34 H 0.96998 * 120.00159 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.43295 * 180.02562 * 20 11 10 36 36 H 1.08000 * 119.36947 * 180.02562 * 21 20 11 37 37 H 0.96699 * 116.99966 * 180.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6525 2.0974 -1.2518 6 6 1.5256 3.4384 -1.2997 7 8 1.7333 4.1045 -0.3041 8 7 1.1696 4.0410 -2.4514 9 6 0.9460 5.4172 -2.4783 10 6 0.4543 6.0099 -3.6312 11 6 0.2357 7.4010 -3.6355 12 6 -0.2644 8.0567 -4.7858 13 1 -0.1125 9.1187 -4.9109 14 6 -0.9559 7.3287 -5.7617 15 7 -1.3472 6.1067 -5.5108 16 14 -1.3194 8.1033 -7.4223 17 1 -0.2012 7.8181 -8.3569 18 1 -2.5781 7.5355 -7.9684 19 1 -1.4677 9.5722 -7.2615 20 6 0.5301 8.1218 -2.4580 21 6 1.0115 7.4505 -1.3703 22 7 1.2003 6.1437 -1.3998 23 6 3.5419 1.4444 0.1238 24 8 4.2191 1.9416 -0.7444 25 8 4.1274 0.8934 1.1988 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.4871 1.5660 -2.0463 32 1 1.0688 3.5173 -3.2618 33 1 0.2433 5.4164 -4.5085 34 1 -1.8259 5.6022 -6.1869 35 1 0.3768 9.1901 -2.4178 36 1 1.2377 7.9981 -0.4673 37 1 5.0934 0.9190 1.2339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603943724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:36 Heat of formation + Delta-G solvation = -107.812203 kcal Electronic energy + Delta-G solvation = -23078.396663 eV Core-core repulsion = 19433.880698 eV Total energy + Delta-G solvation = -3644.515965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.88986 -41.00530 -39.76452 -37.29319 -36.90444 -36.07315 -35.52721 -33.26913 -32.36527 -30.39780 -28.61177 -27.91471 -24.09494 -23.76200 -23.50307 -22.06346 -21.70340 -19.76859 -19.46669 -19.11780 -18.11154 -17.65226 -17.16354 -16.69258 -16.42331 -16.07815 -16.03225 -15.91048 -15.15022 -14.92104 -14.63567 -14.53517 -14.35352 -14.17957 -13.57448 -13.13941 -13.01733 -12.86873 -12.68786 -12.62046 -12.19319 -12.06360 -11.89647 -11.87444 -11.76664 -11.52971 -11.34910 -11.19127 -10.36721 -9.92570 -9.63233 -8.84239 -8.58284 -6.57569 0.82917 1.02088 1.14283 1.39607 1.42455 1.55267 1.59591 1.96657 2.20908 2.40764 2.85142 3.10420 3.61939 3.79031 3.96923 4.14935 4.16463 4.42694 4.58819 4.71686 4.81913 4.85282 4.93830 5.06648 5.09723 5.11378 5.27704 5.31104 5.43494 5.51380 5.57246 5.65234 5.78293 5.98937 6.25778 6.57256 6.79412 6.84009 6.91031 6.94315 7.54660 7.89436 8.27404 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023821 B = 0.003615 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.144630 B = 7743.518803 C = 8303.846199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C 0.175 3.825 4 H 0.116 0.884 5 N -0.711 5.711 6 C 0.696 3.304 7 O -0.576 6.576 8 N -0.657 5.657 9 C 0.349 3.651 10 C -0.266 4.266 11 C 0.111 3.889 12 C -0.478 4.478 13 H 0.084 0.916 14 C 0.037 3.963 15 N -0.810 5.810 16 Si 0.991 3.009 17 H -0.261 1.261 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.298 4.298 21 C 0.112 3.888 22 N -0.581 5.581 23 C 0.466 3.534 24 O -0.548 6.548 25 O -0.504 6.504 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.415 0.585 32 H 0.420 0.580 33 H 0.138 0.862 34 H 0.292 0.708 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -15.455 4.470 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C 0.066 3.934 4 H 0.134 0.866 5 N -0.370 5.370 6 C 0.396 3.604 7 O -0.451 6.451 8 N -0.306 5.306 9 C 0.122 3.878 10 C -0.292 4.292 11 C 0.102 3.898 12 C -0.509 4.509 13 H 0.102 0.898 14 C -0.180 4.180 15 N -0.436 5.436 16 Si 0.811 3.189 17 H -0.186 1.186 18 H -0.190 1.190 19 H -0.183 1.183 20 C -0.322 4.322 21 C -0.041 4.041 22 N -0.301 5.301 23 C 0.308 3.692 24 O -0.438 6.438 25 O -0.317 6.317 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.253 0.747 32 H 0.258 0.742 33 H 0.155 0.845 34 H 0.103 0.897 35 H 0.134 0.866 36 H 0.164 0.836 37 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 2.629 -15.433 5.849 16.712 hybrid contribution 0.217 0.640 -2.037 2.147 sum 2.846 -14.792 3.811 15.538 Atomic orbital electron populations 1.21782 0.93630 1.03262 1.02237 1.21793 0.97698 0.89404 1.05863 1.20550 0.85869 0.98270 0.88669 0.86601 1.44711 1.73817 1.04111 1.14366 1.16198 0.77992 0.82606 0.83615 1.90972 1.55231 1.63940 1.34926 1.42356 1.70842 1.05853 1.11560 1.18206 0.94759 0.83522 0.91286 1.21776 1.12320 0.96932 0.98196 1.18017 0.87432 0.91841 0.92469 1.19923 1.31234 0.96802 1.02902 0.89814 1.26850 0.92557 0.95014 1.03580 1.69761 1.26913 1.11112 1.35828 0.85059 0.78622 0.79426 0.75749 1.18591 1.18980 1.18315 1.21829 1.14620 1.00492 0.95263 1.21892 0.95220 0.89375 0.97593 1.67309 1.26906 1.07756 1.28150 1.24511 0.93371 0.72851 0.78483 1.90733 1.66582 1.43664 1.42837 1.84463 1.30407 1.73362 1.43441 0.93042 0.89857 0.92754 0.89178 0.86955 0.74719 0.74248 0.84469 0.89653 0.86632 0.83643 0.71230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.80 71.98 0.71 -1.28 16 2 C -0.11 -1.42 5.44 30.60 0.17 -1.26 16 3 C 0.17 4.02 2.48 44.24 0.11 4.13 16 4 H 0.12 3.03 7.58 -2.39 -0.02 3.01 16 5 N -0.71 -19.49 4.06 -461.43 -1.88 -21.37 16 6 C 0.70 27.94 8.35 179.05 1.50 29.43 16 7 O -0.58 -28.45 14.26 -3.96 -0.06 -28.51 16 8 N -0.66 -27.21 5.39 -322.37 -1.74 -28.95 16 9 C 0.35 17.87 7.42 132.76 0.98 18.86 16 10 C -0.27 -14.06 8.67 23.00 0.20 -13.86 16 11 C 0.11 6.03 5.65 -21.12 -0.12 5.91 16 12 C -0.48 -24.94 9.15 23.52 0.22 -24.72 16 13 H 0.08 4.18 7.88 -2.91 -0.02 4.15 16 14 C 0.04 1.75 5.31 85.29 0.45 2.20 16 15 N -0.81 -39.31 10.50 21.84 0.23 -39.08 16 16 Si 0.99 35.81 29.58 68.60 2.03 37.84 16 17 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 18 H -0.27 -9.04 7.11 99.48 0.71 -8.34 16 19 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 20 C -0.30 -15.21 9.85 22.60 0.22 -14.99 16 21 C 0.11 5.66 11.10 84.27 0.94 6.59 16 22 N -0.58 -31.43 7.86 -194.27 -1.53 -32.96 16 23 C 0.47 12.07 7.66 71.23 0.55 12.62 16 24 O -0.55 -19.15 17.08 21.96 0.38 -18.77 16 25 O -0.50 -8.94 13.23 -51.41 -0.68 -9.62 16 26 H 0.05 0.79 7.75 -2.39 -0.02 0.77 16 27 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.11 1.09 8.00 -2.39 -0.02 1.07 16 31 H 0.42 8.49 8.62 -92.71 -0.80 7.69 16 32 H 0.42 14.08 8.72 -92.70 -0.81 13.27 16 33 H 0.14 7.14 5.81 -2.91 -0.02 7.12 16 34 H 0.29 12.58 8.29 -92.71 -0.77 11.81 16 35 H 0.12 5.36 8.06 -2.91 -0.02 5.33 16 36 H 0.15 6.36 8.06 -2.91 -0.02 6.34 16 37 H 0.43 4.26 9.10 -74.06 -0.67 3.59 16 Total: -1.00 -78.03 326.46 1.54 -76.50 By element: Atomic # 1 Polarization: 42.40 SS G_CDS: -1.13 Total: 41.26 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 5.91 Total: 23.64 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -4.91 Total: -122.35 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -0.36 Total: -56.89 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Total: -78.03 1.54 -76.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603943724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.317 kcal (2) G-P(sol) polarization free energy of solvation -78.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds