Wall clock time and date at job start Tue Mar 31 2020 06:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.09006 * 109.46997 * 304.99561 * 3 2 1 5 5 C 1.50703 * 109.47175 * 184.99840 * 3 2 1 6 6 H 1.07999 * 119.99526 * 239.99693 * 5 3 2 7 7 C 1.37880 * 119.99926 * 59.99371 * 5 3 2 8 8 N 1.31511 * 119.99981 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99728 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47223 * 60.00138 * 9 7 5 11 11 H 1.48502 * 109.47253 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47178 * 300.00293 * 9 7 5 13 13 N 1.46495 * 109.47255 * 64.99473 * 3 2 1 14 14 C 1.34775 * 120.00161 * 274.99704 * 13 3 2 15 15 O 1.21577 * 119.99939 * 0.02562 * 14 13 3 16 16 N 1.34777 * 120.00150 * 179.97438 * 14 13 3 17 17 C 1.39374 * 119.99950 * 184.83480 * 16 14 13 18 18 C 1.39430 * 119.62803 * 174.86764 * 17 16 14 19 19 C 1.38296 * 119.30359 * 179.97438 * 18 17 16 20 20 C 1.38795 * 118.57480 * 359.97438 * 19 18 17 21 21 C 1.39182 * 119.20658 * 359.97438 * 20 19 18 22 22 C 1.48051 * 119.68609 * 180.02562 * 21 20 19 23 23 O 1.21433 * 119.99934 * 0.02562 * 22 21 20 24 24 O 1.34685 * 119.99479 * 180.02562 * 22 21 20 25 25 N 1.31981 * 119.62814 * 354.59146 * 17 16 14 26 26 H 1.08993 * 109.47699 * 300.00090 * 1 2 3 27 27 H 1.09002 * 109.47057 * 60.01131 * 1 2 3 28 28 H 1.09006 * 109.46567 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47531 * 239.99382 * 2 1 3 30 30 H 1.09000 * 109.46568 * 119.99454 * 2 1 3 31 31 H 0.97000 * 120.00027 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99987 * 95.00798 * 13 3 2 33 33 H 0.96993 * 120.00133 * 5.12058 * 16 14 13 34 34 H 1.08003 * 120.34902 * 359.95477 * 18 17 16 35 35 H 1.08001 * 120.71148 * 180.02562 * 19 18 17 36 36 H 1.07995 * 120.39998 * 179.97438 * 20 19 18 37 37 H 0.96698 * 116.99132 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8891 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3373 -2.1731 9 14 6.0050 0.8801 -1.3809 10 1 6.5967 0.1454 -0.2340 11 1 6.3980 0.2167 -2.6501 12 1 6.5004 2.2801 -1.3806 13 7 1.6523 2.0975 1.2517 14 6 0.4350 2.6645 1.3667 15 8 -0.3415 2.6319 0.4318 16 7 0.0782 3.2666 2.5185 17 6 -1.2146 3.7639 2.6734 18 6 -1.6085 4.2884 3.9038 19 6 -2.8927 4.7805 4.0499 20 6 -3.7493 4.7349 2.9588 21 6 -3.2921 4.1990 1.7584 22 6 -4.1966 4.1456 0.5875 23 8 -5.3314 4.5686 0.6772 24 8 -3.7608 3.6279 -0.5770 25 7 -2.0504 3.7380 1.6523 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 3.8294 -0.0605 -2.9501 32 1 2.2718 2.1234 1.9977 33 1 0.7222 3.3576 3.2380 34 1 -0.9182 4.3099 4.7341 35 1 -3.2217 5.1923 4.9926 36 1 -4.7585 5.1106 3.0402 37 1 -4.3878 3.6142 -1.3131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604981616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:44 Heat of formation + Delta-G solvation = -64.408779 kcal Electronic energy + Delta-G solvation = -23337.779131 eV Core-core repulsion = 19695.145279 eV Total energy + Delta-G solvation = -3642.633851 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95212 -39.87842 -38.79899 -36.08058 -35.52128 -34.24243 -32.71962 -32.35308 -31.07158 -29.83653 -26.90595 -25.56523 -23.79813 -22.80686 -21.73894 -20.74398 -19.49069 -18.69863 -17.99504 -17.78819 -16.48368 -16.21599 -16.05138 -15.79755 -15.25471 -15.13905 -14.91242 -14.12384 -13.75068 -13.57884 -13.32101 -13.15050 -12.63272 -12.33929 -12.19786 -11.56096 -11.47134 -11.23404 -10.99710 -10.96388 -10.85022 -10.58030 -10.32244 -10.15418 -10.02317 -9.88553 -9.56021 -9.04549 -8.85469 -8.48446 -8.30756 -7.75973 -6.11523 -4.21048 0.43644 1.19744 2.38441 2.77806 2.98281 3.25420 3.31241 3.32239 3.63973 4.11231 4.19305 4.34017 4.66154 4.77489 4.90723 4.98982 5.19196 5.21323 5.33202 5.73447 5.92806 6.12058 6.41785 6.45168 6.53019 6.66913 6.72599 6.92127 7.12512 7.30051 7.42022 7.48758 7.63501 7.68596 7.88776 7.95201 8.12342 8.20555 8.74400 8.87084 9.30737 9.48175 10.93744 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024416 B = 0.003840 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.502293 B = 7290.092010 C = 7968.993688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.288 3.712 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.720 5.720 14 C 0.677 3.323 15 O -0.521 6.521 16 N -0.675 5.675 17 C 0.389 3.611 18 C -0.185 4.185 19 C -0.054 4.054 20 C -0.153 4.153 21 C 0.122 3.878 22 C 0.546 3.454 23 O -0.517 6.517 24 O -0.476 6.476 25 N -0.422 5.422 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.019 0.981 29 H 0.099 0.901 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.383 0.617 33 H 0.410 0.590 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 7.118 12.723 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.373 5.373 14 C 0.376 3.624 15 O -0.392 6.392 16 N -0.324 5.324 17 C 0.153 3.847 18 C -0.210 4.210 19 C -0.080 4.080 20 C -0.175 4.175 21 C -0.016 4.016 22 C 0.389 3.611 23 O -0.406 6.406 24 O -0.284 6.284 25 N -0.139 5.139 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.215 0.785 33 H 0.246 0.754 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.330 6.642 11.051 16.521 hybrid contribution 1.045 0.304 0.974 1.461 sum -9.285 6.946 12.025 16.705 Atomic orbital electron populations 1.21806 0.98121 0.97800 1.01440 1.21958 0.92762 0.99848 1.02123 1.18708 0.93900 0.88862 0.79909 0.93159 1.21182 0.90669 1.39193 1.06329 0.92192 1.24868 0.98541 0.94819 0.95373 1.69886 1.35195 1.37432 1.09286 0.86515 0.84888 0.78268 0.77438 1.20208 1.21136 1.20231 1.45862 1.13252 1.58878 1.19320 1.16279 0.84115 0.79664 0.82361 1.91066 1.50632 1.61233 1.36241 1.43128 1.10312 1.59908 1.19076 1.18205 0.85869 0.91686 0.88916 1.21755 0.98376 1.03703 0.97173 1.21281 0.92130 0.95924 0.98697 1.21898 1.02006 1.01383 0.92230 1.19848 0.90819 0.99319 0.91625 1.20535 0.84540 0.73263 0.82776 1.90874 1.19656 1.45603 1.84490 1.84862 1.47925 1.74481 1.21128 1.67753 1.01625 1.14948 1.29606 0.94341 0.92976 0.96157 0.88313 0.95194 0.92483 0.78476 0.75433 0.83969 0.83559 0.83518 0.73304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.29 7.14 2.24 -69.08 -0.15 6.99 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.47 11.29 55.43 0.63 -23.85 16 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.72 -14.45 5.03 -59.81 -0.30 -14.75 16 14 C 0.68 13.38 7.09 -86.92 -0.62 12.77 16 15 O -0.52 -12.42 11.73 5.30 0.06 -12.36 16 16 N -0.68 -9.83 5.39 -15.80 -0.09 -9.92 16 17 C 0.39 5.65 7.42 -154.90 -1.15 4.50 16 18 C -0.19 -1.81 9.94 -39.12 -0.39 -2.20 16 19 C -0.05 -0.47 10.16 -39.35 -0.40 -0.87 16 20 C -0.15 -1.70 9.63 -39.02 -0.38 -2.08 16 21 C 0.12 1.83 6.74 -83.04 -0.56 1.27 16 22 C 0.55 8.23 8.32 34.76 0.29 8.51 16 23 O -0.52 -7.97 17.10 -19.21 -0.33 -8.29 16 24 O -0.48 -7.01 13.24 -40.45 -0.54 -7.55 16 25 N -0.42 -7.38 7.64 -8.94 -0.07 -7.45 16 26 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 27 H 0.05 1.28 7.84 -51.93 -0.41 0.87 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.38 6.46 8.56 -40.82 -0.35 6.11 16 33 H 0.41 4.14 8.72 -40.82 -0.36 3.78 16 34 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.15 1.40 7.63 -52.49 -0.40 1.00 16 37 H 0.41 3.67 9.11 45.56 0.42 4.08 16 LS Contribution 321.30 15.07 4.84 4.84 Total: -1.00 -34.87 321.30 -7.72 -42.59 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -3.33 Total: 11.00 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -3.58 Total: 10.42 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.17 Total: -55.97 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.80 Total: -28.21 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.87 -7.72 -42.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604981616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.819 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds