Wall clock time and date at job start Tue Mar 31 2020 06:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.09006 * 109.46997 * 304.99561 * 3 2 1 5 5 C 1.50703 * 109.47175 * 184.99840 * 3 2 1 6 6 H 1.07999 * 119.99526 * 239.99693 * 5 3 2 7 7 C 1.37880 * 119.99926 * 59.99371 * 5 3 2 8 8 N 1.31511 * 119.99981 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99728 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47223 * 60.00138 * 9 7 5 11 11 H 1.48502 * 109.47253 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47178 * 300.00293 * 9 7 5 13 13 N 1.46495 * 109.47255 * 64.99473 * 3 2 1 14 14 C 1.34775 * 120.00161 * 274.99704 * 13 3 2 15 15 O 1.21577 * 119.99939 * 0.02562 * 14 13 3 16 16 N 1.34777 * 120.00150 * 179.97438 * 14 13 3 17 17 C 1.39374 * 119.99950 * 184.83480 * 16 14 13 18 18 C 1.39430 * 119.62803 * 174.86764 * 17 16 14 19 19 C 1.38296 * 119.30359 * 179.97438 * 18 17 16 20 20 C 1.38795 * 118.57480 * 359.97438 * 19 18 17 21 21 C 1.39182 * 119.20658 * 359.97438 * 20 19 18 22 22 C 1.48051 * 119.68609 * 180.02562 * 21 20 19 23 23 O 1.21433 * 119.99934 * 0.02562 * 22 21 20 24 24 O 1.34685 * 119.99479 * 180.02562 * 22 21 20 25 25 N 1.31981 * 119.62814 * 354.59146 * 17 16 14 26 26 H 1.08993 * 109.47699 * 300.00090 * 1 2 3 27 27 H 1.09002 * 109.47057 * 60.01131 * 1 2 3 28 28 H 1.09006 * 109.46567 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47531 * 239.99382 * 2 1 3 30 30 H 1.09000 * 109.46568 * 119.99454 * 2 1 3 31 31 H 0.97000 * 120.00027 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99987 * 95.00798 * 13 3 2 33 33 H 0.96993 * 120.00133 * 5.12058 * 16 14 13 34 34 H 1.08003 * 120.34902 * 359.95477 * 18 17 16 35 35 H 1.08001 * 120.71148 * 180.02562 * 19 18 17 36 36 H 1.07995 * 120.39998 * 179.97438 * 20 19 18 37 37 H 0.96698 * 116.99132 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8891 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3373 -2.1731 9 14 6.0050 0.8801 -1.3809 10 1 6.5967 0.1454 -0.2340 11 1 6.3980 0.2167 -2.6501 12 1 6.5004 2.2801 -1.3806 13 7 1.6523 2.0975 1.2517 14 6 0.4350 2.6645 1.3667 15 8 -0.3415 2.6319 0.4318 16 7 0.0782 3.2666 2.5185 17 6 -1.2146 3.7639 2.6734 18 6 -1.6085 4.2884 3.9038 19 6 -2.8927 4.7805 4.0499 20 6 -3.7493 4.7349 2.9588 21 6 -3.2921 4.1990 1.7584 22 6 -4.1966 4.1456 0.5875 23 8 -5.3314 4.5686 0.6772 24 8 -3.7608 3.6279 -0.5770 25 7 -2.0504 3.7380 1.6523 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 3.8294 -0.0605 -2.9501 32 1 2.2718 2.1234 1.9977 33 1 0.7222 3.3576 3.2380 34 1 -0.9182 4.3099 4.7341 35 1 -3.2217 5.1923 4.9926 36 1 -4.7585 5.1106 3.0402 37 1 -4.3878 3.6142 -1.3131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604981616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:44 Heat of formation + Delta-G solvation = -91.160193 kcal Electronic energy + Delta-G solvation = -23338.939159 eV Core-core repulsion = 19695.145279 eV Total energy + Delta-G solvation = -3643.793880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.03107 -41.14218 -40.08721 -37.29943 -37.09899 -35.69844 -34.27045 -33.56670 -32.80101 -31.07237 -28.81351 -26.57984 -25.27272 -24.34687 -22.82245 -22.23914 -21.27414 -20.01757 -19.32353 -18.96409 -17.90723 -17.65270 -16.96068 -16.95014 -16.86255 -16.53700 -16.23203 -15.85067 -15.07247 -14.88538 -14.57716 -14.46276 -14.09342 -13.86693 -13.48583 -13.15649 -13.10738 -12.86736 -12.64740 -12.62336 -12.18510 -12.11856 -12.05118 -11.83488 -11.51723 -11.24758 -11.01785 -10.90712 -10.50429 -10.12487 -9.66494 -9.24382 -8.12557 -6.29866 -0.50995 0.31770 1.33188 1.46842 1.49170 1.56320 1.64937 1.95876 2.34329 2.44548 2.93049 3.13175 3.17543 3.63340 3.85382 4.07389 4.15246 4.29156 4.49576 4.52305 4.59668 4.78129 4.93160 5.09063 5.11533 5.25823 5.28865 5.38441 5.48173 5.56284 5.64220 5.74397 5.78466 5.89409 6.13358 6.20894 6.74432 6.79116 7.01851 7.37158 7.42739 7.86445 8.92765 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024416 B = 0.003840 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.502293 B = 7290.092010 C = 7968.993688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 C 0.299 3.701 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.716 5.716 14 C 0.677 3.323 15 O -0.569 6.569 16 N -0.660 5.660 17 C 0.353 3.647 18 C -0.154 4.154 19 C -0.041 4.041 20 C -0.135 4.135 21 C 0.081 3.919 22 C 0.543 3.457 23 O -0.530 6.530 24 O -0.496 6.496 25 N -0.477 5.477 26 H 0.039 0.961 27 H 0.022 0.978 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.432 0.568 34 H 0.190 0.810 35 H 0.200 0.800 36 H 0.164 0.836 37 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 8.093 16.491 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.195 3.805 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.371 5.371 14 C 0.376 3.624 15 O -0.442 6.442 16 N -0.311 5.311 17 C 0.118 3.882 18 C -0.178 4.178 19 C -0.066 4.066 20 C -0.158 4.158 21 C -0.055 4.055 22 C 0.387 3.613 23 O -0.421 6.421 24 O -0.307 6.307 25 N -0.195 5.195 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.236 0.764 33 H 0.272 0.728 34 H 0.207 0.793 35 H 0.217 0.783 36 H 0.181 0.819 37 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -9.754 7.655 14.893 19.379 hybrid contribution 0.743 0.081 -0.127 0.758 sum -9.011 7.735 14.766 18.949 Atomic orbital electron populations 1.21599 0.97185 0.98523 1.00050 1.21796 0.93414 0.99421 1.01217 1.18212 0.93380 0.88647 0.80273 0.98650 1.21548 0.91282 1.38928 1.06757 0.90784 1.25766 1.03260 0.94420 0.95022 1.70055 1.37135 1.38344 1.09838 0.85420 0.79125 0.78383 0.77509 1.18779 1.21437 1.19725 1.45434 1.14143 1.59043 1.18448 1.16397 0.83269 0.79452 0.83252 1.91046 1.51841 1.62847 1.38505 1.42657 1.11331 1.59274 1.17884 1.18648 0.85366 0.93768 0.90418 1.22238 0.99405 1.00122 0.96011 1.21917 0.90880 0.94186 0.99599 1.22263 1.03076 0.99011 0.91437 1.20017 0.90551 1.02078 0.92897 1.20837 0.84647 0.72803 0.82994 1.90840 1.20017 1.46428 1.84772 1.84847 1.49221 1.74539 1.22132 1.67460 1.03127 1.16683 1.32232 0.94212 0.95854 0.94149 0.91051 0.93980 0.92666 0.76396 0.72810 0.79294 0.78257 0.81885 0.71273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.51 71.98 0.61 -4.88 16 2 C -0.12 -5.95 5.45 30.60 0.17 -5.78 16 3 C 0.30 15.30 2.24 44.25 0.10 15.40 16 4 H 0.00 -0.27 7.58 -2.38 -0.02 -0.29 16 5 C -0.55 -28.51 8.73 25.60 0.22 -28.28 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -52.49 11.29 21.45 0.24 -52.25 16 9 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 13 N -0.72 -28.90 5.03 -461.42 -2.32 -31.22 16 14 C 0.68 27.17 7.09 179.05 1.27 28.44 16 15 O -0.57 -28.46 11.73 -3.96 -0.05 -28.51 16 16 N -0.66 -18.34 5.39 -322.17 -1.74 -20.08 16 17 C 0.35 9.69 7.42 133.13 0.99 10.68 16 18 C -0.15 -2.30 9.94 22.57 0.22 -2.07 16 19 C -0.04 -0.49 10.16 22.42 0.23 -0.27 16 20 C -0.14 -2.67 9.63 22.63 0.22 -2.45 16 21 C 0.08 2.42 6.74 41.82 0.28 2.70 16 22 C 0.54 17.04 8.32 70.43 0.59 17.63 16 23 O -0.53 -16.63 17.10 20.05 0.34 -16.29 16 24 O -0.50 -15.77 13.24 -55.94 -0.74 -16.51 16 25 N -0.48 -16.92 7.64 -182.19 -1.39 -18.32 16 26 H 0.04 1.84 5.64 -2.39 -0.01 1.83 16 27 H 0.02 1.19 7.84 -2.39 -0.02 1.17 16 28 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.07 3.98 5.95 -2.39 -0.01 3.97 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.40 13.06 8.56 -92.71 -0.79 12.27 16 33 H 0.43 7.53 8.72 -92.71 -0.81 6.73 16 34 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.20 0.41 8.06 -2.91 -0.02 0.39 16 36 H 0.16 2.63 7.63 -2.91 -0.02 2.61 16 37 H 0.43 8.56 9.11 -74.06 -0.67 7.89 16 Total: -1.00 -81.71 321.30 0.60 -81.11 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -1.12 Total: 26.01 kcal Atomic # 6 Polarization: 27.05 SS G_CDS: 5.35 Total: 32.39 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -5.21 Total: -121.86 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: -0.44 Total: -61.31 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -81.71 0.60 -81.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604981616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.049 kcal (2) G-P(sol) polarization free energy of solvation -81.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds