Wall clock time and date at job start Tue Mar 31 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 S 1.81396 * 109.47360 * 120.00191 * 2 1 3 5 5 C 1.81403 * 103.00044 * 294.99899 * 4 2 1 6 6 C 1.50699 * 109.46864 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00667 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99498 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99832 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00342 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.47339 * 90.00164 * 10 8 6 12 12 H 1.48496 * 109.47026 * 210.00126 * 10 8 6 13 13 H 1.48498 * 109.46871 * 329.99943 * 10 8 6 14 14 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 15 15 O 1.21282 * 119.99717 * 264.99901 * 14 2 1 16 16 N 1.34777 * 120.00195 * 84.99566 * 14 2 1 17 17 C 1.46496 * 120.00037 * 179.97438 * 16 14 2 18 18 C 1.52992 * 109.47223 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.47600 * 180.02562 * 18 17 16 20 20 C 1.38237 * 120.00082 * 269.73329 * 19 18 17 21 21 C 1.38232 * 120.00412 * 179.76399 * 20 19 18 22 22 C 1.38238 * 119.99518 * 0.49791 * 21 20 19 23 23 C 1.38233 * 120.00506 * 359.75299 * 22 21 20 24 24 C 1.38235 * 119.99786 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.08994 * 109.47187 * 299.99909 * 5 4 2 29 29 H 1.09005 * 109.46789 * 59.99769 * 5 4 2 30 30 H 0.97006 * 120.00212 * 179.97438 * 9 8 6 31 31 H 0.96998 * 119.99395 * 0.02562 * 16 14 2 32 32 H 1.08997 * 109.47478 * 300.00333 * 17 16 14 33 33 H 1.09001 * 109.46870 * 60.00201 * 17 16 14 34 34 H 1.09007 * 109.47184 * 300.00325 * 18 17 16 35 35 H 1.09001 * 109.47135 * 60.00238 * 18 17 16 36 36 H 1.08004 * 119.99887 * 359.97438 * 20 19 18 37 37 H 1.07995 * 120.00306 * 180.22292 * 21 20 19 38 38 H 1.08002 * 119.99806 * 179.72027 * 22 21 20 39 39 H 1.07992 * 120.00449 * 179.97438 * 23 22 21 40 40 H 1.07994 * 120.00777 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1347 -0.8551 1.4810 5 6 1.5665 0.2153 2.8309 6 6 1.9975 -0.3697 4.1512 7 1 2.5576 -1.2928 4.1758 8 6 1.6768 0.2737 5.3277 9 7 2.0525 -0.2371 6.4799 10 14 0.7074 1.8699 5.2852 11 1 -0.7454 1.5685 5.3441 12 1 1.0862 2.7101 6.4495 13 1 1.0110 2.6000 4.0282 14 6 2.0324 -0.7103 -1.2306 15 8 2.3208 -1.8871 -1.1761 16 7 2.1610 -0.0379 -2.3915 17 6 2.6499 -0.7283 -3.5875 18 6 2.7018 0.2549 -4.7585 19 6 3.2041 -0.4553 -5.9891 20 6 4.5584 -0.4876 -6.2641 21 6 5.0197 -1.1432 -7.3902 22 6 4.1256 -1.7579 -8.2469 23 6 2.7709 -1.7213 -7.9747 24 6 2.3101 -1.0704 -6.8456 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 2.0002 1.2084 2.7142 29 1 0.4792 0.2881 2.8037 30 1 1.8271 0.2157 7.3077 31 1 1.9306 0.9033 -2.4349 32 1 3.6492 -1.1201 -3.3980 33 1 1.9777 -1.5506 -3.8326 34 1 1.7026 0.6471 -4.9483 35 1 3.3742 1.0770 -4.5132 36 1 5.2566 -0.0034 -5.5973 37 1 6.0781 -1.1715 -7.6032 38 1 4.4856 -2.2663 -9.1292 39 1 2.0724 -2.2011 -8.6442 40 1 1.2517 -1.0413 -6.6330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413015708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:54 Heat of formation + Delta-G solvation = -27.179501 kcal Electronic energy + Delta-G solvation = -19654.361631 eV Core-core repulsion = 16559.635377 eV Total energy + Delta-G solvation = -3094.726254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89744 -39.34620 -35.61876 -33.41724 -33.01591 -32.41677 -31.23237 -29.33241 -28.63639 -24.94227 -23.32250 -22.92691 -22.57513 -21.39064 -20.36770 -17.35738 -17.06864 -16.73399 -16.49150 -15.98181 -15.50819 -15.11167 -15.03704 -14.26822 -14.07666 -13.83081 -13.66518 -13.63399 -13.33490 -13.14905 -12.81588 -12.55016 -12.38872 -12.12871 -11.80343 -11.76804 -11.62771 -11.43333 -11.25389 -10.82162 -10.40440 -10.12769 -9.68530 -9.61683 -9.27514 -9.14989 -9.06494 -8.86212 -8.71307 -6.78035 -6.17487 -4.19573 0.97839 1.06039 2.16696 2.79830 3.17426 3.19895 3.26893 3.27600 3.45763 3.65451 4.30176 4.43991 4.44415 4.65536 4.68588 4.78849 4.80746 4.90360 5.07867 5.13220 5.15842 5.20386 5.23219 5.23967 5.56699 5.62094 5.65497 5.72476 5.74952 5.86221 6.11228 6.17786 6.20516 6.26153 6.32821 6.56866 6.65467 6.68530 7.39977 7.43295 8.26325 8.31005 8.86238 9.37771 10.94644 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.042378 B = 0.002367 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.554254 B =11824.571903 C =11983.598309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 H 0.097 0.903 4 S -0.199 6.199 5 C 0.033 3.967 6 C -0.512 4.512 7 H 0.084 0.916 8 C 0.079 3.921 9 N -0.891 5.891 10 Si 0.879 3.121 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.266 1.266 14 C 0.538 3.462 15 O -0.514 6.514 16 N -0.734 5.734 17 C 0.127 3.873 18 C -0.092 4.092 19 C -0.081 4.081 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.114 4.114 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.268 0.732 31 H 0.399 0.601 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 4.217 -29.396 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.238 4.238 3 H 0.115 0.885 4 S 0.029 5.971 5 C -0.115 4.115 6 C -0.551 4.551 7 H 0.102 0.898 8 C -0.125 4.125 9 N -0.528 5.528 10 Si 0.705 3.295 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.191 1.191 14 C 0.322 3.678 15 O -0.387 6.387 16 N -0.388 5.388 17 C 0.003 3.997 18 C -0.130 4.130 19 C -0.081 4.081 20 C -0.131 4.131 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.137 4.137 24 C -0.132 4.132 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.653 2.412 -29.092 29.200 hybrid contribution -1.265 2.512 0.003 2.813 sum -0.611 4.924 -29.090 29.510 Atomic orbital electron populations 1.21960 0.91474 1.03829 1.02431 1.23260 1.00471 1.03118 0.96960 0.88480 1.87362 1.74686 1.38216 0.96882 1.21545 0.98348 0.96220 0.95343 1.20443 1.37057 1.10828 0.86798 0.89786 1.24867 0.95336 0.97376 0.94964 1.69871 1.45849 1.39564 0.97542 0.86796 0.80760 0.83810 0.78089 1.19888 1.20833 1.19125 1.19918 0.77175 0.87186 0.83476 1.90735 1.47877 1.15628 1.84507 1.45941 1.69145 1.14099 1.09659 1.21277 1.00470 0.94891 0.83054 1.20793 1.02493 0.97824 0.91852 1.19679 0.93650 0.98824 0.95976 1.21113 0.94975 0.99578 0.97469 1.21172 0.99777 0.97845 0.94872 1.21184 0.93514 0.99775 0.99678 1.21159 0.95782 0.99352 0.97433 1.21091 0.99588 0.97869 0.94654 0.90946 0.90830 0.92426 0.94859 0.95020 0.92228 0.76655 0.91231 0.91334 0.90188 0.90101 0.85879 0.85986 0.86140 0.86031 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.08 37.16 0.34 -1.59 16 2 C -0.11 -1.71 3.17 -27.88 -0.09 -1.80 16 3 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 4 S -0.20 -4.40 20.38 -107.50 -2.19 -6.59 16 5 C 0.03 0.80 4.46 36.00 0.16 0.96 16 6 C -0.51 -14.75 9.68 -34.44 -0.33 -15.08 16 7 H 0.08 2.68 7.96 -52.49 -0.42 2.26 16 8 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 9 N -0.89 -27.05 13.96 55.43 0.77 -26.28 16 10 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 14 C 0.54 8.44 6.95 -10.98 -0.08 8.37 16 15 O -0.51 -10.29 16.14 5.56 0.09 -10.20 16 16 N -0.73 -7.99 5.56 -60.30 -0.33 -8.33 16 17 C 0.13 1.26 5.66 -4.05 -0.02 1.24 16 18 C -0.09 -0.63 5.46 -27.89 -0.15 -0.79 16 19 C -0.08 -0.64 5.13 -104.62 -0.54 -1.18 16 20 C -0.11 -0.90 9.70 -39.58 -0.38 -1.28 16 21 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 22 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.11 -0.88 9.70 -39.58 -0.38 -1.26 16 25 H 0.07 1.05 6.92 -51.93 -0.36 0.69 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 29 H 0.03 0.73 6.57 -51.92 -0.34 0.39 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 31 H 0.40 3.09 8.47 -40.82 -0.35 2.74 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.08 0.48 8.08 -51.93 -0.42 0.07 16 36 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 37 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -34.16 351.46 -9.88 -44.04 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.07 Total: -0.02 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -2.77 Total: -14.06 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.44 Total: -34.60 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 16 Polarization: -4.40 SS G_CDS: -2.19 Total: -6.59 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.16 -9.88 -44.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.858 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds