Wall clock time and date at job start Tue Mar 31 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 S 1.81396 * 109.47360 * 120.00191 * 2 1 3 5 5 C 1.81403 * 103.00044 * 294.99899 * 4 2 1 6 6 C 1.50699 * 109.46864 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00667 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99498 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99832 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00342 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.47339 * 90.00164 * 10 8 6 12 12 H 1.48496 * 109.47026 * 210.00126 * 10 8 6 13 13 H 1.48498 * 109.46871 * 329.99943 * 10 8 6 14 14 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 15 15 O 1.21282 * 119.99717 * 264.99901 * 14 2 1 16 16 N 1.34777 * 120.00195 * 84.99566 * 14 2 1 17 17 C 1.46496 * 120.00037 * 179.97438 * 16 14 2 18 18 C 1.52992 * 109.47223 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.47600 * 180.02562 * 18 17 16 20 20 C 1.38237 * 120.00082 * 269.73329 * 19 18 17 21 21 C 1.38232 * 120.00412 * 179.76399 * 20 19 18 22 22 C 1.38238 * 119.99518 * 0.49791 * 21 20 19 23 23 C 1.38233 * 120.00506 * 359.75299 * 22 21 20 24 24 C 1.38235 * 119.99786 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.08994 * 109.47187 * 299.99909 * 5 4 2 29 29 H 1.09005 * 109.46789 * 59.99769 * 5 4 2 30 30 H 0.97006 * 120.00212 * 179.97438 * 9 8 6 31 31 H 0.96998 * 119.99395 * 0.02562 * 16 14 2 32 32 H 1.08997 * 109.47478 * 300.00333 * 17 16 14 33 33 H 1.09001 * 109.46870 * 60.00201 * 17 16 14 34 34 H 1.09007 * 109.47184 * 300.00325 * 18 17 16 35 35 H 1.09001 * 109.47135 * 60.00238 * 18 17 16 36 36 H 1.08004 * 119.99887 * 359.97438 * 20 19 18 37 37 H 1.07995 * 120.00306 * 180.22292 * 21 20 19 38 38 H 1.08002 * 119.99806 * 179.72027 * 22 21 20 39 39 H 1.07992 * 120.00449 * 179.97438 * 23 22 21 40 40 H 1.07994 * 120.00777 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1347 -0.8551 1.4810 5 6 1.5665 0.2153 2.8309 6 6 1.9975 -0.3697 4.1512 7 1 2.5576 -1.2928 4.1758 8 6 1.6768 0.2737 5.3277 9 7 2.0525 -0.2371 6.4799 10 14 0.7074 1.8699 5.2852 11 1 -0.7454 1.5685 5.3441 12 1 1.0862 2.7101 6.4495 13 1 1.0110 2.6000 4.0282 14 6 2.0324 -0.7103 -1.2306 15 8 2.3208 -1.8871 -1.1761 16 7 2.1610 -0.0379 -2.3915 17 6 2.6499 -0.7283 -3.5875 18 6 2.7018 0.2549 -4.7585 19 6 3.2041 -0.4553 -5.9891 20 6 4.5584 -0.4876 -6.2641 21 6 5.0197 -1.1432 -7.3902 22 6 4.1256 -1.7579 -8.2469 23 6 2.7709 -1.7213 -7.9747 24 6 2.3101 -1.0704 -6.8456 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 2.0002 1.2084 2.7142 29 1 0.4792 0.2881 2.8037 30 1 1.8271 0.2157 7.3077 31 1 1.9306 0.9033 -2.4349 32 1 3.6492 -1.1201 -3.3980 33 1 1.9777 -1.5506 -3.8326 34 1 1.7026 0.6471 -4.9483 35 1 3.3742 1.0770 -4.5132 36 1 5.2566 -0.0034 -5.5973 37 1 6.0781 -1.1715 -7.6032 38 1 4.4856 -2.2663 -9.1292 39 1 2.0724 -2.2011 -8.6442 40 1 1.2517 -1.0413 -6.6330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413015708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:54 Heat of formation + Delta-G solvation = -48.859593 kcal Electronic energy + Delta-G solvation = -19655.301750 eV Core-core repulsion = 16559.635377 eV Total energy + Delta-G solvation = -3095.666374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.90451 -40.08142 -36.54304 -35.21508 -34.49933 -33.27663 -31.75446 -31.39067 -29.37736 -25.93477 -24.73495 -24.13028 -23.45734 -22.07211 -21.44438 -19.15538 -18.30267 -17.85300 -17.49206 -16.78492 -16.65756 -16.13128 -15.99820 -15.83107 -15.33651 -15.07227 -14.85406 -14.59603 -14.39185 -14.21615 -13.93332 -13.77927 -13.64353 -13.24568 -12.93482 -12.77614 -12.59648 -12.44595 -12.10995 -12.05918 -11.95308 -11.78746 -11.70638 -10.97731 -10.87311 -10.54850 -10.18901 -9.80167 -9.62657 -8.54435 -8.35714 -6.46319 0.41843 0.51718 0.66941 1.35404 1.38848 1.49211 1.56217 1.94004 2.14057 2.31468 2.88979 2.96988 3.64692 3.88025 3.92550 3.94390 4.04739 4.07758 4.19502 4.22204 4.31655 4.56441 4.59494 4.64163 4.65345 4.66550 4.71408 4.80229 4.94514 4.99826 5.13944 5.18233 5.19591 5.35222 5.36263 5.59069 5.64889 5.70891 6.08368 6.13769 6.44422 6.57985 7.15592 7.16009 8.80580 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.042378 B = 0.002367 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.554254 B =11824.571903 C =11983.598309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.130 0.870 4 S -0.272 6.272 5 C 0.048 3.952 6 C -0.532 4.532 7 H 0.029 0.971 8 C 0.015 3.985 9 N -0.943 5.943 10 Si 0.959 3.041 11 H -0.260 1.260 12 H -0.279 1.279 13 H -0.237 1.237 14 C 0.536 3.464 15 O -0.567 6.567 16 N -0.708 5.708 17 C 0.129 3.871 18 C -0.078 4.078 19 C -0.094 4.094 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.133 4.133 23 C -0.130 4.130 24 C -0.126 4.126 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.272 0.728 31 H 0.420 0.580 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 7.352 -31.943 32.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.218 4.218 3 H 0.148 0.852 4 S -0.045 6.045 5 C -0.100 4.100 6 C -0.571 4.571 7 H 0.047 0.953 8 C -0.185 4.185 9 N -0.582 5.582 10 Si 0.780 3.220 11 H -0.185 1.185 12 H -0.205 1.205 13 H -0.160 1.160 14 C 0.321 3.679 15 O -0.445 6.445 16 N -0.362 5.362 17 C 0.006 3.994 18 C -0.116 4.116 19 C -0.095 4.095 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.148 4.148 24 C -0.144 4.144 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.258 0.742 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.990 5.585 -31.684 32.187 hybrid contribution -0.674 1.427 0.669 1.714 sum -1.664 7.012 -31.014 31.841 Atomic orbital electron populations 1.21959 0.89462 1.03457 1.04563 1.23307 1.01951 1.03431 0.93141 0.85209 1.87608 1.75931 1.40274 1.00692 1.21273 0.99017 0.96296 0.93369 1.20661 1.36955 1.09481 0.89965 0.95306 1.26008 0.96397 1.02054 0.94031 1.70045 1.47569 1.41912 0.98645 0.85540 0.79062 0.77978 0.79393 1.18484 1.20453 1.16031 1.19919 0.76874 0.86567 0.84498 1.90726 1.50470 1.17920 1.85351 1.45716 1.67158 1.14877 1.08406 1.21304 0.99043 0.95595 0.83507 1.20710 1.04000 0.97025 0.89854 1.19843 0.93798 0.99335 0.96497 1.21347 0.95385 0.99963 0.97935 1.21449 1.00740 0.97820 0.94913 1.21485 0.93651 0.99674 1.00252 1.21460 0.96293 0.99328 0.97723 1.21350 1.00326 0.97843 0.94834 0.91056 0.92574 0.87841 0.93440 0.93407 0.91856 0.74226 0.93065 0.92400 0.88227 0.88723 0.85183 0.84653 0.84479 0.84433 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.08 71.98 0.65 -2.67 16 2 C -0.09 -2.56 3.17 29.85 0.09 -2.47 16 3 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 4 S -0.27 -12.15 20.38 -56.49 -1.15 -13.30 16 5 C 0.05 2.29 4.46 71.24 0.32 2.60 16 6 C -0.53 -31.59 9.68 25.60 0.25 -31.34 16 7 H 0.03 1.97 7.96 -2.91 -0.02 1.94 16 8 C 0.01 0.85 5.47 84.65 0.46 1.31 16 9 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 10 Si 0.96 41.89 27.47 68.60 1.88 43.77 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 14 C 0.54 15.96 6.95 87.66 0.61 16.57 16 15 O -0.57 -22.88 16.14 -3.03 -0.05 -22.92 16 16 N -0.71 -13.33 5.56 -463.07 -2.57 -15.90 16 17 C 0.13 2.34 5.66 86.38 0.49 2.83 16 18 C -0.08 -0.86 5.46 29.84 0.16 -0.70 16 19 C -0.09 -1.34 5.13 -19.86 -0.10 -1.44 16 20 C -0.13 -1.88 9.70 22.27 0.22 -1.66 16 21 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 22 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 23 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 24 C -0.13 -1.72 9.70 22.27 0.22 -1.51 16 25 H 0.07 1.80 6.92 -2.39 -0.02 1.78 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.05 2.09 7.20 -2.39 -0.02 2.07 16 29 H 0.05 2.09 6.57 -2.39 -0.02 2.08 16 30 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 31 H 0.42 4.55 8.47 -92.71 -0.79 3.77 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 0.74 8.09 -2.38 -0.02 0.72 16 35 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 36 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 40 H 0.13 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -79.38 351.46 2.63 -76.75 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.18 Total: 13.41 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.04 Total: -23.05 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -2.27 Total: -74.65 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.77 kcal Atomic # 16 Polarization: -12.15 SS G_CDS: -1.15 Total: -13.30 kcal Total: -79.38 2.63 -76.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.890 kcal (2) G-P(sol) polarization free energy of solvation -79.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds