Wall clock time and date at job start Tue Mar 31 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46771 * 2 1 4 4 C 1.50698 * 109.47314 * 240.00535 * 2 1 3 5 5 H 1.07995 * 119.99809 * 240.00030 * 4 2 1 6 6 C 1.37874 * 120.00036 * 59.99402 * 4 2 1 7 7 N 1.31516 * 120.00219 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00032 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47254 * 90.00045 * 8 6 4 10 10 H 1.48505 * 109.47482 * 210.00130 * 8 6 4 11 11 H 1.48502 * 109.47099 * 330.00300 * 8 6 4 12 12 N 1.46899 * 109.47164 * 120.00150 * 2 1 3 13 13 C 1.46900 * 110.99919 * 275.00348 * 12 2 1 14 14 C 1.50702 * 109.47003 * 180.02562 * 13 12 2 15 15 O 1.21284 * 120.00026 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00040 * 179.97438 * 14 13 12 17 17 C 1.39921 * 119.99888 * 185.26504 * 16 14 13 18 18 C 1.38898 * 120.07206 * 34.96779 * 17 16 14 19 19 C 1.38084 * 119.93063 * 180.02562 * 18 17 16 20 20 C 1.38315 * 120.07309 * 359.74468 * 19 18 17 21 21 C 1.38263 * 120.13299 * 0.50661 * 20 19 18 22 22 C 1.38128 * 120.07458 * 359.49628 * 21 20 19 23 23 N 1.48018 * 120.03691 * 180.27652 * 22 21 20 24 24 O 1.21799 * 119.99807 * 355.04661 * 23 22 21 25 25 O 1.21793 * 120.00083 * 175.04874 * 23 22 21 26 26 H 1.08999 * 109.47138 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47626 * 299.99685 * 1 2 3 28 28 H 1.09006 * 109.47319 * 59.99867 * 1 2 3 29 29 H 0.97002 * 119.99847 * 180.02562 * 7 6 4 30 30 H 1.00894 * 110.99616 * 151.04628 * 12 2 1 31 31 H 1.08993 * 109.47472 * 60.00114 * 13 12 2 32 32 H 1.09008 * 109.46810 * 299.99651 * 13 12 2 33 33 H 0.97003 * 119.99973 * 5.26113 * 16 14 13 34 34 H 1.07997 * 120.03099 * 359.97438 * 18 17 16 35 35 H 1.08004 * 119.97128 * 179.97438 * 19 18 17 36 36 H 1.07991 * 119.93065 * 180.27807 * 20 19 18 37 37 H 1.08001 * 119.96088 * 179.76380 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5883 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1200 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4865 -0.1410 -5.1123 11 1 3.6293 -1.7580 -3.7123 12 7 2.0196 -0.6925 1.1994 13 6 2.0823 0.2225 2.3469 14 6 2.5884 -0.5216 3.5557 15 8 2.8688 -1.6985 3.4699 16 7 2.7295 0.1207 4.7322 17 6 3.3021 -0.5391 5.8251 18 6 4.3241 -1.4583 5.6258 19 6 4.8868 -2.1082 6.7065 20 6 4.4373 -1.8407 7.9869 21 6 3.4166 -0.9300 8.1882 22 6 2.8496 -0.2767 7.1114 23 7 1.7610 0.7026 7.3283 24 8 1.3031 0.8666 8.4450 25 8 1.3232 1.3442 6.3903 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.7087 1.1615 -3.4844 30 1 2.9172 -1.1205 1.0286 31 1 1.0870 0.6162 2.5525 32 1 2.7588 1.0462 2.1182 33 1 2.4341 1.0403 4.8211 34 1 4.6777 -1.6652 4.6266 35 1 5.6812 -2.8234 6.5522 36 1 4.8821 -2.3469 8.8308 37 1 3.0652 -0.7261 9.1889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610395708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:19 Heat of formation + Delta-G solvation = -0.032227 kcal Electronic energy + Delta-G solvation = -22828.810104 eV Core-core repulsion = 19188.967830 eV Total energy + Delta-G solvation = -3639.842275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.49503 -40.66701 -38.92352 -36.87843 -35.79829 -34.95498 -32.61505 -32.24498 -30.69498 -29.04437 -26.76359 -25.80394 -24.96950 -23.42731 -22.70401 -20.63916 -19.84878 -19.44482 -18.88181 -18.01247 -17.74279 -17.34903 -16.36875 -15.83839 -15.71611 -15.07018 -14.82416 -14.68482 -14.04954 -13.81011 -13.40358 -13.31080 -12.91125 -12.56789 -12.26108 -11.93885 -11.76162 -11.40667 -11.36040 -11.33129 -10.97996 -10.80950 -10.78121 -10.44015 -10.20037 -10.15329 -9.97583 -9.74646 -8.90459 -8.78751 -8.52636 -7.42932 -6.07842 -4.14434 -0.39842 0.60379 1.09518 1.18022 2.47727 2.65011 3.06211 3.28079 3.34514 3.37644 3.97569 4.26290 4.35723 4.45293 4.52518 4.66865 4.88393 5.18791 5.20414 5.27457 5.40863 5.51001 5.69757 5.73576 5.76762 5.86373 6.10392 6.30096 6.77776 7.04396 7.06023 7.15791 7.38712 7.43966 7.72642 7.80142 7.98808 8.19862 8.26084 8.54584 8.94467 9.51737 10.98592 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.003192 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.750067 B = 8770.123880 C = 9628.173461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.213 3.787 3 H 0.005 0.995 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.672 5.672 13 C 0.046 3.954 14 C 0.517 3.483 15 O -0.498 6.498 16 N -0.677 5.677 17 C 0.237 3.763 18 C -0.130 4.130 19 C -0.043 4.043 20 C -0.143 4.143 21 C -0.038 4.038 22 C -0.085 4.085 23 N 0.041 4.959 24 O -0.158 6.158 25 O -0.178 6.178 26 H 0.033 0.967 27 H 0.005 0.995 28 H 0.083 0.917 29 H 0.262 0.738 30 H 0.341 0.659 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.426 0.574 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.260 -1.432 21.084 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.305 5.305 13 C -0.087 4.087 14 C 0.306 3.694 15 O -0.369 6.369 16 N -0.330 5.330 17 C 0.136 3.864 18 C -0.151 4.151 19 C -0.062 4.062 20 C -0.162 4.162 21 C -0.058 4.058 22 C -0.172 4.172 23 N 0.556 4.444 24 O -0.374 6.374 25 O -0.386 6.386 26 H 0.052 0.948 27 H 0.024 0.976 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.159 0.841 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.270 0.730 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.201 -2.783 20.754 22.489 hybrid contribution 0.503 0.832 -0.899 1.324 sum 8.704 -1.951 19.855 21.766 Atomic orbital electron populations 1.21750 0.97610 0.99641 0.99536 1.19178 0.92835 0.92369 0.85044 0.97779 1.21223 1.31724 1.12666 0.90244 0.92032 1.24910 0.94988 0.94966 0.99078 1.69891 1.36507 1.22786 1.23613 0.86485 0.79253 0.79314 0.82271 1.20552 1.21250 1.19902 1.60555 1.33351 1.31683 1.04939 1.21848 1.02105 0.94943 0.89828 1.21597 0.76296 0.87829 0.83672 1.90701 1.46900 1.15400 1.83922 1.44515 1.60787 1.18247 1.09453 1.17616 0.90779 0.93093 0.84869 1.21364 0.94556 0.97310 1.01866 1.21543 0.97196 0.95791 0.91715 1.21161 0.97740 0.99150 0.98176 1.20902 0.93904 0.92680 0.98266 1.21006 0.97773 1.02811 0.95635 1.43453 1.00573 0.99984 1.00368 1.94527 1.61188 1.71418 1.10312 1.94386 1.63080 1.46507 1.34597 0.94760 0.97598 0.89852 0.92823 0.84088 0.87874 0.92361 0.72962 0.82460 0.83629 0.83559 0.82772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.19 37.16 0.34 -2.78 16 2 C 0.21 5.26 2.60 -68.87 -0.18 5.08 16 3 H 0.00 0.12 7.80 -51.93 -0.40 -0.29 16 4 C -0.52 -14.10 8.59 -34.44 -0.30 -14.40 16 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 12 N -0.67 -14.30 5.93 -109.22 -0.65 -14.95 16 13 C 0.05 0.77 5.97 -4.98 -0.03 0.74 16 14 C 0.52 8.09 7.59 -10.98 -0.08 8.01 16 15 O -0.50 -9.06 14.00 5.55 0.08 -8.98 16 16 N -0.68 -8.76 4.69 -9.86 -0.05 -8.81 16 17 C 0.24 2.86 6.24 -83.69 -0.52 2.33 16 18 C -0.13 -1.37 8.65 -39.39 -0.34 -1.71 16 19 C -0.04 -0.31 10.04 -39.61 -0.40 -0.71 16 20 C -0.14 -0.89 10.04 -39.54 -0.40 -1.29 16 21 C -0.04 -0.31 9.55 -39.61 -0.38 -0.69 16 22 C -0.08 -0.97 6.86 -79.76 -0.55 -1.51 16 23 N 0.04 0.54 4.45 34.05 0.15 0.70 16 24 O -0.16 -2.10 18.46 -29.46 -0.54 -2.64 16 25 O -0.18 -2.49 15.95 -29.46 -0.47 -2.96 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 28 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.34 7.28 7.92 -39.29 -0.31 6.97 16 31 H 0.10 1.68 7.44 -51.93 -0.39 1.30 16 32 H 0.06 0.90 8.06 -51.92 -0.42 0.48 16 33 H 0.43 4.99 6.26 -40.82 -0.26 4.74 16 34 H 0.16 1.81 6.54 -52.49 -0.34 1.47 16 35 H 0.15 0.64 8.06 -52.48 -0.42 0.21 16 36 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 37 H 0.15 0.99 7.62 -52.49 -0.40 0.59 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -31.30 321.63 -7.97 -39.28 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.02 Total: 7.13 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.92 Total: -5.33 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.09 Total: -47.40 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.94 Total: -14.58 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.30 -7.97 -39.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610395708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.243 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds