Wall clock time and date at job start Tue Mar 31 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.46718 * 2 1 4 4 C 1.36336 * 126.51662 * 270.02557 * 3 2 1 5 5 C 1.46672 * 125.80935 * 0.02562 * 4 3 2 6 6 O 1.21599 * 119.99736 * 0.02562 * 5 4 3 7 7 O 1.34863 * 120.00241 * 180.02562 * 5 4 3 8 8 C 1.45200 * 116.99987 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46914 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47028 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00236 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99724 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00448 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99582 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47340 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46960 * 120.00366 * 14 12 10 17 17 H 1.48500 * 109.46920 * 240.00237 * 14 12 10 18 18 N 1.37882 * 108.37914 * 179.74612 * 4 3 2 19 19 H 0.97003 * 125.34824 * 180.27626 * 18 4 3 20 20 C 1.34082 * 109.29873 * 0.40016 * 18 4 3 21 21 C 1.50699 * 125.81731 * 179.87235 * 20 18 4 22 22 C 1.38650 * 108.36393 * 359.60294 * 20 18 4 23 23 C 1.46625 * 126.51107 * 180.22696 * 22 20 18 24 24 C 1.50703 * 119.99615 * 274.38754 * 23 22 20 25 25 O 1.21321 * 120.00210 * 94.37955 * 23 22 20 26 26 H 1.08999 * 109.46950 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46595 * 299.99618 * 1 2 3 28 28 H 1.08998 * 109.47312 * 59.99527 * 1 2 3 29 29 H 1.09004 * 109.46595 * 240.00382 * 2 1 3 30 30 H 1.08998 * 109.47312 * 120.00473 * 2 1 3 31 31 H 1.08993 * 109.46972 * 299.99668 * 8 7 5 32 32 H 1.08998 * 109.47412 * 60.00290 * 8 7 5 33 33 H 1.09000 * 109.47552 * 300.00047 * 9 8 7 34 34 H 1.09003 * 109.47287 * 60.00108 * 9 8 7 35 35 H 0.96998 * 119.99951 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.47391 * 264.36864 * 21 20 18 37 37 H 1.08998 * 109.47040 * 144.37172 * 21 20 18 38 38 H 1.09001 * 109.47381 * 24.37502 * 21 20 18 39 39 H 1.09001 * 109.47070 * 65.01879 * 24 23 22 40 40 H 1.09001 * 109.46562 * 185.01524 * 24 23 22 41 41 H 1.08999 * 109.47087 * 305.01446 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3022 2.1859 -1.0957 5 6 2.1527 1.7664 -2.4932 6 8 1.7558 0.6467 -2.7527 7 8 2.4555 2.6225 -3.4903 8 6 2.2829 2.1397 -4.8488 9 6 2.6725 3.2425 -5.8352 10 6 2.4941 2.7412 -7.2452 11 1 2.1380 1.7367 -7.4202 12 6 2.7844 3.5654 -8.3117 13 7 3.2176 4.7887 -8.0987 14 14 2.5625 2.9442 -10.0595 15 1 2.0667 1.5448 -10.0283 16 1 1.5789 3.8017 -10.7684 17 1 3.8650 2.9926 -10.7711 18 7 2.7336 3.4231 -0.6665 19 1 2.9884 4.1599 -1.2437 20 6 2.7481 3.4468 0.6740 21 6 3.1607 4.6158 1.5310 22 6 2.3131 2.2147 1.1375 23 6 2.1711 1.8105 2.5398 24 6 3.3570 1.2594 3.2888 25 8 1.0991 1.9200 3.0971 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.9180 1.2683 -5.0080 32 1 1.2404 1.8634 -5.0066 33 1 2.0372 4.1137 -5.6758 34 1 3.7150 3.5193 -5.6777 35 1 3.4214 5.3686 -8.8490 36 1 4.2071 4.5060 1.8161 37 1 2.5412 4.6458 2.4273 38 1 3.0323 5.5412 0.9695 39 1 4.1175 2.0342 3.3859 40 1 3.0413 0.9338 4.2799 41 1 3.7699 0.4115 2.7422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052028192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:55 Heat of formation + Delta-G solvation = -109.403367 kcal Electronic energy + Delta-G solvation = -23078.591255 eV Core-core repulsion = 19537.546636 eV Total energy + Delta-G solvation = -3541.044620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.84426 -39.62545 -38.87710 -36.24535 -34.27163 -33.40633 -32.23987 -30.73837 -30.32790 -29.49374 -27.38101 -25.20515 -23.95901 -22.96045 -21.63790 -20.86302 -19.45962 -18.86902 -18.16191 -16.69114 -16.15425 -15.98191 -15.76723 -15.48206 -15.27554 -14.65811 -14.61542 -14.42042 -14.20562 -13.79913 -13.39276 -13.14796 -12.82918 -12.81715 -12.56416 -12.50629 -12.41069 -12.27635 -12.06163 -11.32141 -11.27107 -11.12141 -11.02052 -10.82625 -10.70851 -10.24692 -10.00472 -9.73373 -9.68068 -9.35010 -8.99094 -8.50606 -8.31592 -6.16442 -4.20753 1.24912 1.71142 2.11416 2.80382 3.11168 3.20467 3.24020 3.31861 3.37187 4.07117 4.35122 4.40758 4.72188 4.82925 4.93494 5.03316 5.11763 5.12908 5.19999 5.20652 5.35134 5.46925 5.48017 5.55093 5.63949 5.73605 5.82411 6.01249 6.01841 6.02719 6.26612 6.31612 6.42825 6.55453 6.63315 6.87735 7.16024 7.32470 7.48110 7.53699 7.80444 8.10101 8.18553 8.84923 9.44189 10.95154 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028077 B = 0.003022 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.012399 B = 9264.451180 C = 9997.053013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.028 4.028 4 C -0.031 4.031 5 C 0.527 3.473 6 O -0.500 6.500 7 O -0.363 6.363 8 C 0.078 3.922 9 C 0.025 3.975 10 C -0.526 4.526 11 H 0.061 0.939 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.900 3.100 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.510 5.510 19 H 0.430 0.570 20 C 0.100 3.900 21 C -0.097 4.097 22 C -0.262 4.262 23 C 0.439 3.561 24 C -0.197 4.197 25 O -0.452 6.452 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 -3.079 22.254 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 C -0.035 4.035 4 C -0.141 4.141 5 C 0.372 3.628 6 O -0.389 6.389 7 O -0.280 6.280 8 C 0.006 3.994 9 C -0.012 4.012 10 C -0.564 4.564 11 H 0.079 0.921 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.105 5.105 19 H 0.269 0.731 20 C -0.023 4.023 21 C -0.154 4.154 22 C -0.270 4.270 23 C 0.314 3.686 24 C -0.254 4.254 25 O -0.325 6.325 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.278 -3.093 22.151 22.402 hybrid contribution 0.151 0.129 -1.542 1.554 sum 1.430 -2.964 20.609 20.870 Atomic orbital electron populations 1.21640 0.94374 1.01652 1.02102 1.20205 0.96498 0.90440 1.03285 1.19524 0.98919 0.96140 0.88934 1.18898 1.16554 0.87492 0.91123 1.19771 0.74943 0.83476 0.84651 1.90838 1.43370 1.20557 1.84130 1.86572 1.78400 1.44753 1.18239 1.23679 1.01083 1.00162 0.74494 1.19179 0.98015 0.92835 0.91197 1.21010 1.45576 0.99906 0.89927 0.92115 1.24986 0.94789 0.94785 0.99593 1.69976 1.44499 1.06884 1.31552 0.86407 0.77899 0.79078 0.83899 1.19525 1.20802 1.20796 1.41615 1.49362 1.13148 1.06331 0.73061 1.20669 1.02070 0.96410 0.83147 1.20542 1.02622 0.93636 0.98637 1.19767 1.16775 0.95627 0.94797 1.21644 0.88781 0.72548 0.85628 1.22281 0.98394 1.03275 1.01477 1.90560 1.29922 1.42646 1.69392 0.92384 0.92772 0.92382 0.88866 0.91575 0.92060 0.92083 0.95434 0.95429 0.92735 0.89628 0.89667 0.90427 0.88828 0.89975 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 37.16 0.37 -1.44 16 2 C -0.07 -0.86 5.68 -27.88 -0.16 -1.02 16 3 C -0.03 -0.39 5.47 -104.06 -0.57 -0.95 16 4 C -0.03 -0.46 7.02 -82.43 -0.58 -1.04 16 5 C 0.53 9.46 7.93 34.14 0.27 9.73 16 6 O -0.50 -9.76 14.48 -19.34 -0.28 -10.04 16 7 O -0.36 -7.08 10.23 -40.94 -0.42 -7.49 16 8 C 0.08 1.70 5.42 37.16 0.20 1.90 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C -0.53 -14.59 9.11 -34.44 -0.31 -14.90 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 14 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 N -0.51 -6.01 6.00 -5.57 -0.03 -6.04 16 19 H 0.43 4.35 8.96 -40.82 -0.37 3.98 16 20 C 0.10 1.03 7.21 -81.46 -0.59 0.44 16 21 C -0.10 -0.61 10.20 36.01 0.37 -0.25 16 22 C -0.26 -3.10 5.81 -105.11 -0.61 -3.71 16 23 C 0.44 4.71 6.53 -30.92 -0.20 4.50 16 24 C -0.20 -1.32 10.23 36.01 0.37 -0.95 16 25 O -0.45 -6.29 17.85 5.52 0.10 -6.19 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.09 1.32 6.41 -51.93 -0.33 0.99 16 30 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -32.90 359.24 -7.34 -40.25 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.15 Total: -1.19 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.69 Total: -5.60 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.70 Total: -31.31 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.60 Total: -23.73 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.90 -7.34 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052028192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.157 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds