Wall clock time and date at job start Tue Mar 31 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.46718 * 2 1 4 4 C 1.36336 * 126.51662 * 270.02557 * 3 2 1 5 5 C 1.46672 * 125.80935 * 0.02562 * 4 3 2 6 6 O 1.21599 * 119.99736 * 0.02562 * 5 4 3 7 7 O 1.34863 * 120.00241 * 180.02562 * 5 4 3 8 8 C 1.45200 * 116.99987 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46914 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47028 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00236 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99724 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00448 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99582 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47340 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46960 * 120.00366 * 14 12 10 17 17 H 1.48500 * 109.46920 * 240.00237 * 14 12 10 18 18 N 1.37882 * 108.37914 * 179.74612 * 4 3 2 19 19 H 0.97003 * 125.34824 * 180.27626 * 18 4 3 20 20 C 1.34082 * 109.29873 * 0.40016 * 18 4 3 21 21 C 1.50699 * 125.81731 * 179.87235 * 20 18 4 22 22 C 1.38650 * 108.36393 * 359.60294 * 20 18 4 23 23 C 1.46625 * 126.51107 * 180.22696 * 22 20 18 24 24 C 1.50703 * 119.99615 * 274.38754 * 23 22 20 25 25 O 1.21321 * 120.00210 * 94.37955 * 23 22 20 26 26 H 1.08999 * 109.46950 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46595 * 299.99618 * 1 2 3 28 28 H 1.08998 * 109.47312 * 59.99527 * 1 2 3 29 29 H 1.09004 * 109.46595 * 240.00382 * 2 1 3 30 30 H 1.08998 * 109.47312 * 120.00473 * 2 1 3 31 31 H 1.08993 * 109.46972 * 299.99668 * 8 7 5 32 32 H 1.08998 * 109.47412 * 60.00290 * 8 7 5 33 33 H 1.09000 * 109.47552 * 300.00047 * 9 8 7 34 34 H 1.09003 * 109.47287 * 60.00108 * 9 8 7 35 35 H 0.96998 * 119.99951 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.47391 * 264.36864 * 21 20 18 37 37 H 1.08998 * 109.47040 * 144.37172 * 21 20 18 38 38 H 1.09001 * 109.47381 * 24.37502 * 21 20 18 39 39 H 1.09001 * 109.47070 * 65.01879 * 24 23 22 40 40 H 1.09001 * 109.46562 * 185.01524 * 24 23 22 41 41 H 1.08999 * 109.47087 * 305.01446 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3022 2.1859 -1.0957 5 6 2.1527 1.7664 -2.4932 6 8 1.7558 0.6467 -2.7527 7 8 2.4555 2.6225 -3.4903 8 6 2.2829 2.1397 -4.8488 9 6 2.6725 3.2425 -5.8352 10 6 2.4941 2.7412 -7.2452 11 1 2.1380 1.7367 -7.4202 12 6 2.7844 3.5654 -8.3117 13 7 3.2176 4.7887 -8.0987 14 14 2.5625 2.9442 -10.0595 15 1 2.0667 1.5448 -10.0283 16 1 1.5789 3.8017 -10.7684 17 1 3.8650 2.9926 -10.7711 18 7 2.7336 3.4231 -0.6665 19 1 2.9884 4.1599 -1.2437 20 6 2.7481 3.4468 0.6740 21 6 3.1607 4.6158 1.5310 22 6 2.3131 2.2147 1.1375 23 6 2.1711 1.8105 2.5398 24 6 3.3570 1.2594 3.2888 25 8 1.0991 1.9200 3.0971 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.9180 1.2683 -5.0080 32 1 1.2404 1.8634 -5.0066 33 1 2.0372 4.1137 -5.6758 34 1 3.7150 3.5193 -5.6777 35 1 3.4214 5.3686 -8.8490 36 1 4.2071 4.5060 1.8161 37 1 2.5412 4.6458 2.4273 38 1 3.0323 5.5412 0.9695 39 1 4.1175 2.0342 3.3859 40 1 3.0413 0.9338 4.2799 41 1 3.7699 0.4115 2.7422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052028192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:55 Heat of formation + Delta-G solvation = -128.515400 kcal Electronic energy + Delta-G solvation = -23079.420015 eV Core-core repulsion = 19537.546636 eV Total energy + Delta-G solvation = -3541.873380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.85245 -41.04514 -39.81184 -37.77857 -35.53591 -35.25817 -33.14969 -32.29492 -31.50440 -30.26633 -28.45650 -26.96826 -25.18649 -23.98011 -23.05532 -22.44639 -20.60756 -19.88570 -19.26698 -18.53391 -17.67753 -17.63121 -16.82489 -16.52491 -16.40325 -16.19172 -15.56991 -15.42607 -15.19191 -14.90724 -14.76437 -14.50152 -14.37167 -13.75479 -13.70262 -13.29816 -13.15837 -13.09143 -13.04010 -13.02188 -12.87542 -12.65190 -12.62189 -12.27191 -12.19691 -11.79487 -11.54592 -11.50466 -11.34303 -10.85596 -10.64646 -9.97550 -9.29765 -8.30374 -6.43207 0.09385 0.88448 1.19302 1.39458 1.39983 1.52338 1.60446 1.90719 1.97663 2.38129 3.04509 3.26888 3.63336 3.68277 3.93478 4.01240 4.18465 4.21055 4.26902 4.31658 4.42897 4.51941 4.62109 4.65144 4.70550 4.72799 4.77881 4.83067 4.99628 5.04783 5.12601 5.19128 5.25233 5.30943 5.42133 5.43919 5.48539 5.66973 5.70105 6.03263 6.27262 6.53417 6.63812 6.70709 7.26809 8.82405 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028077 B = 0.003022 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.012399 B = 9264.451180 C = 9997.053013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 C -0.026 4.026 4 C -0.067 4.067 5 C 0.525 3.475 6 O -0.523 6.523 7 O -0.367 6.367 8 C 0.094 3.906 9 C 0.033 3.967 10 C -0.550 4.550 11 H 0.064 0.936 12 C 0.007 3.993 13 N -0.926 5.926 14 Si 0.973 3.027 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.274 1.274 18 N -0.508 5.508 19 H 0.436 0.564 20 C 0.127 3.873 21 C -0.098 4.098 22 C -0.282 4.282 23 C 0.445 3.555 24 C -0.191 4.191 25 O -0.491 6.491 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.006 0.994 34 H 0.008 0.992 35 H 0.268 0.732 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 -3.159 23.601 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 C -0.034 4.034 4 C -0.176 4.176 5 C 0.372 3.628 6 O -0.414 6.414 7 O -0.284 6.284 8 C 0.021 3.979 9 C -0.004 4.004 10 C -0.588 4.588 11 H 0.083 0.917 12 C -0.192 4.192 13 N -0.565 5.565 14 Si 0.796 3.204 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.200 1.200 18 N -0.103 5.103 19 H 0.277 0.723 20 C 0.003 3.997 21 C -0.155 4.155 22 C -0.289 4.289 23 C 0.322 3.678 24 C -0.248 4.248 25 O -0.366 6.366 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.025 0.975 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.134 -3.176 23.505 23.815 hybrid contribution -0.090 0.211 -1.816 1.831 sum 2.045 -2.965 21.689 21.986 Atomic orbital electron populations 1.21583 0.94468 1.02382 1.00771 1.20241 0.96370 0.90402 1.03611 1.19765 0.97805 0.96444 0.89364 1.18571 1.20154 0.89438 0.89423 1.20237 0.74203 0.83009 0.85312 1.90814 1.44668 1.21355 1.84535 1.86546 1.78996 1.45268 1.17582 1.23196 1.00778 0.98539 0.75393 1.18973 0.96307 0.93161 0.91984 1.21394 1.45912 1.00312 0.91153 0.91738 1.25940 0.94142 0.94871 1.04215 1.70086 1.45149 1.08124 1.33157 0.85285 0.78155 0.78792 0.78141 1.18676 1.20090 1.19957 1.41652 1.49159 1.12397 1.07134 0.72315 1.21399 0.98761 0.96941 0.82603 1.20781 1.04338 0.92309 0.98111 1.20067 1.17536 0.96066 0.95204 1.22116 0.89346 0.71328 0.84961 1.22308 0.97040 1.04222 1.01222 1.90559 1.31649 1.44497 1.69928 0.90689 0.92986 0.94639 0.90472 0.89203 0.91919 0.92234 0.97537 0.97327 0.92299 0.86729 0.88987 0.88971 0.86139 0.89238 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.89 71.98 0.71 -2.77 16 2 C -0.07 -1.75 5.68 29.85 0.17 -1.58 16 3 C -0.03 -0.71 5.47 -19.50 -0.11 -0.81 16 4 C -0.07 -2.01 7.02 39.95 0.28 -1.73 16 5 C 0.53 19.45 7.93 70.02 0.56 20.01 16 6 O -0.52 -21.17 14.48 19.51 0.28 -20.89 16 7 O -0.37 -14.79 10.23 -57.76 -0.59 -15.38 16 8 C 0.09 4.23 5.42 71.98 0.39 4.62 16 9 C 0.03 1.75 5.35 29.85 0.16 1.91 16 10 C -0.55 -31.00 9.11 25.60 0.23 -30.76 16 11 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 12 C 0.01 0.42 5.46 84.66 0.46 0.88 16 13 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 14 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 15 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 N -0.51 -11.52 6.00 -171.53 -1.03 -12.55 16 19 H 0.44 8.53 8.96 -92.71 -0.83 7.69 16 20 C 0.13 2.34 7.21 42.31 0.31 2.65 16 21 C -0.10 -0.89 10.20 71.24 0.73 -0.17 16 22 C -0.28 -6.19 5.81 -20.18 -0.12 -6.31 16 23 C 0.45 8.59 6.53 27.88 0.18 8.77 16 24 C -0.19 -1.93 10.23 71.24 0.73 -1.20 16 25 O -0.49 -13.02 17.85 -3.16 -0.06 -13.08 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 2.24 6.41 -2.39 -0.02 2.22 16 30 H 0.09 1.82 8.05 -2.39 -0.02 1.80 16 31 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.09 0.81 8.07 -2.39 -0.02 0.79 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 0.82 8.12 -2.39 -0.02 0.80 16 41 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -72.73 359.24 5.81 -66.93 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.21 Total: 10.57 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 4.68 Total: -6.50 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -0.74 Total: -67.02 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -0.36 Total: -49.34 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -72.73 5.81 -66.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052028192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.590 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds