Wall clock time and date at job start Tue Mar 31 2020 06:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35909 * 116.99723 * 2 1 4 4 C 1.38505 * 119.95713 * 359.97438 * 3 2 1 5 5 C 1.39511 * 119.90958 * 180.02562 * 4 3 2 6 6 C 1.47870 * 120.09668 * 179.97438 * 5 4 3 7 7 O 1.21559 * 119.99733 * 320.70725 * 6 5 4 8 8 N 1.34777 * 120.00703 * 140.70900 * 6 5 4 9 9 C 1.46499 * 119.99453 * 4.84778 * 8 6 5 10 10 C 1.46492 * 120.00387 * 184.84825 * 8 6 5 11 11 C 1.50705 * 109.47076 * 90.00076 * 10 8 6 12 12 H 1.08002 * 119.99423 * 359.97438 * 11 10 8 13 13 C 1.37873 * 120.00159 * 180.02562 * 11 10 8 14 14 N 1.31519 * 120.00261 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 119.99903 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47347 * 90.00741 * 15 13 11 17 17 H 1.48507 * 109.47163 * 210.00211 * 15 13 11 18 18 H 1.48493 * 109.47403 * 330.00171 * 15 13 11 19 19 C 1.39517 * 119.81588 * 0.02562 * 5 4 3 20 20 C 1.38512 * 119.90028 * 359.97438 * 19 5 4 21 21 O 1.35909 * 119.95472 * 180.02562 * 20 19 5 22 22 C 1.42909 * 116.99442 * 0.02562 * 21 20 19 23 23 C 1.38728 * 120.09666 * 359.72937 * 20 19 5 24 24 C 1.50697 * 119.91059 * 180.27248 * 23 20 19 25 25 H 1.09001 * 109.47324 * 300.00099 * 1 2 3 26 26 H 1.09004 * 109.47503 * 60.00039 * 1 2 3 27 27 H 1.09006 * 109.47355 * 180.02562 * 1 2 3 28 28 H 1.08009 * 120.04887 * 359.97438 * 4 3 2 29 29 H 1.09005 * 109.46977 * 85.71416 * 9 8 6 30 30 H 1.08996 * 109.47159 * 205.71834 * 9 8 6 31 31 H 1.09007 * 109.47277 * 325.72006 * 9 8 6 32 32 H 1.09000 * 109.47305 * 209.99817 * 10 8 6 33 33 H 1.08992 * 109.47452 * 330.00211 * 10 8 6 34 34 H 0.96994 * 120.00065 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.05385 * 179.97438 * 19 5 4 36 36 H 1.08999 * 109.46430 * 179.97438 * 22 21 20 37 37 H 1.08995 * 109.46865 * 299.99552 * 22 21 20 38 38 H 1.08990 * 109.47314 * 59.99706 * 22 21 20 39 39 H 1.09001 * 109.47057 * 270.27239 * 24 23 20 40 40 H 1.08996 * 109.47514 * 30.27264 * 24 23 20 41 41 H 1.09007 * 109.47463 * 150.27605 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2907 2.3720 -0.0005 5 6 1.9250 3.6145 -0.0011 6 6 1.1227 4.8567 -0.0022 7 8 0.1088 4.9247 -0.6694 8 7 1.5154 5.9134 0.7363 9 6 2.7908 5.8706 1.4559 10 6 0.6671 7.1048 0.8196 11 6 -0.2819 6.9655 1.9820 12 1 -0.2559 6.0780 2.5969 13 6 -1.1840 7.9705 2.2598 14 7 -2.0125 7.8488 3.2739 15 14 -1.2293 9.5052 1.1958 16 1 -2.1803 9.3016 0.0735 17 1 -1.6709 10.6626 2.0148 18 1 0.1270 9.7716 0.6531 19 6 3.3185 3.6820 -0.0016 20 6 4.0662 2.5160 -0.0011 21 8 5.4238 2.5804 -0.0011 22 6 6.0114 3.8831 -0.0011 23 6 3.4314 1.2825 0.0057 24 6 4.2491 0.0167 0.0124 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2120 2.3155 -0.0014 29 1 3.5946 6.1843 0.7898 30 1 2.7468 6.5418 2.3136 31 1 2.9800 4.8536 1.7998 32 1 1.2918 7.9863 0.9642 33 1 0.0976 7.2106 -0.1037 34 1 -2.6468 8.5560 3.4695 35 1 3.8136 4.6418 -0.0025 36 1 7.0975 3.7917 -0.0006 37 1 5.6924 4.4255 -0.8911 38 1 5.6924 4.4256 0.8888 39 1 4.4502 -0.2914 -1.0136 40 1 5.1918 0.1957 0.5294 41 1 3.6966 -0.7701 0.5263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060617769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:50 Heat of formation + Delta-G solvation = -94.874789 kcal Electronic energy + Delta-G solvation = -23940.950373 eV Core-core repulsion = 20400.535760 eV Total energy + Delta-G solvation = -3540.414613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.98464 -40.54292 -40.01986 -37.28444 -36.82835 -34.84615 -33.91740 -31.05478 -30.36314 -28.81742 -28.42084 -27.99994 -27.18134 -24.75388 -22.98873 -22.81185 -21.06213 -19.19029 -19.12836 -18.23028 -17.52256 -17.28316 -17.16515 -16.93767 -16.76232 -16.44279 -16.18635 -15.90305 -15.39914 -14.79542 -14.37956 -14.31488 -14.26718 -14.15924 -13.76145 -13.43021 -13.37364 -13.15826 -13.06286 -12.83357 -12.58829 -12.49412 -12.43062 -12.32363 -12.12004 -12.07957 -11.78056 -11.65356 -10.89168 -10.84849 -9.58066 -9.33608 -9.23649 -8.36708 -6.43290 -0.20740 0.27552 1.32219 1.36755 1.45032 1.65261 1.88063 2.14895 2.29417 2.60329 2.68336 2.97452 3.34993 3.76299 3.81192 3.94560 4.08720 4.27225 4.31075 4.31611 4.40373 4.46786 4.50532 4.53223 4.67838 4.70381 4.73120 4.81327 4.82718 4.86985 4.88121 4.92729 5.13956 5.18669 5.29630 5.40172 5.44650 5.50406 6.18165 6.19966 6.31731 6.49047 6.58047 7.10271 7.24757 8.80271 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.004502 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.348988 B = 6218.042930 C = 7282.719957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.312 6.312 3 C 0.154 3.846 4 C -0.204 4.204 5 C -0.064 4.064 6 C 0.542 3.458 7 O -0.586 6.586 8 N -0.594 5.594 9 C 0.070 3.930 10 C 0.222 3.778 11 C -0.542 4.542 12 H 0.026 0.974 13 C 0.013 3.987 14 N -0.944 5.944 15 Si 0.949 3.051 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.235 1.235 19 C -0.207 4.207 20 C 0.160 3.840 21 O -0.311 6.311 22 C 0.010 3.990 23 C -0.141 4.141 24 C -0.089 4.089 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.023 0.977 34 H 0.270 0.730 35 H 0.163 0.837 36 H 0.129 0.871 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.165 -12.114 -6.965 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.225 6.225 3 C 0.108 3.892 4 C -0.224 4.224 5 C -0.067 4.067 6 C 0.331 3.669 7 O -0.468 6.468 8 N -0.323 5.323 9 C -0.072 4.072 10 C 0.100 3.900 11 C -0.580 4.580 12 H 0.045 0.955 13 C -0.185 4.185 14 N -0.584 5.584 15 Si 0.772 3.228 16 H -0.202 1.202 17 H -0.199 1.199 18 H -0.158 1.158 19 C -0.226 4.226 20 C 0.114 3.886 21 O -0.224 6.224 22 C -0.084 4.084 23 C -0.143 4.143 24 C -0.146 4.146 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.152 0.848 28 H 0.142 0.858 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.181 0.819 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.762 -12.298 -7.179 22.765 hybrid contribution -1.408 1.195 0.048 1.847 sum 16.355 -11.103 -7.131 21.014 Atomic orbital electron populations 1.23357 0.76583 1.05929 1.01708 1.86014 1.22929 1.25252 1.88276 1.18281 0.91271 0.84005 0.95672 1.21146 1.00494 0.91304 1.09437 1.19344 0.93950 0.92023 1.01423 1.18819 0.84423 0.84002 0.79617 1.90701 1.27894 1.83395 1.44802 1.47821 1.21969 1.15832 1.46719 1.22345 0.83634 1.03766 0.97422 1.19464 0.90458 0.84338 0.95745 1.21526 1.18932 1.04342 1.13249 0.95527 1.25858 0.94057 1.02237 0.96353 1.70048 1.22234 1.35581 1.30520 0.85695 0.80597 0.78043 0.78509 1.20209 1.19850 1.15751 1.21683 0.92107 0.99721 1.09046 1.18214 0.83467 0.91878 0.95025 1.86061 1.15145 1.33108 1.88081 1.23503 1.00408 0.81921 1.02562 1.18781 0.90357 0.95661 1.09471 1.20453 0.98808 0.92319 1.02984 0.92938 0.92551 0.84759 0.85791 0.89230 0.90526 0.90257 0.92214 0.95900 0.92135 0.81944 0.85295 0.91871 0.91295 0.90594 0.90265 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.31 -7.90 9.52 -92.52 -0.88 -8.78 16 3 C 0.15 4.44 6.65 22.45 0.15 4.59 16 4 C -0.20 -6.97 8.61 22.64 0.20 -6.78 16 5 C -0.06 -2.28 5.23 -20.11 -0.11 -2.38 16 6 C 0.54 24.15 7.35 86.79 0.64 24.79 16 7 O -0.59 -31.33 16.47 -3.90 -0.06 -31.39 16 8 N -0.59 -25.09 2.86 -854.55 -2.44 -27.53 16 9 C 0.07 2.07 8.88 127.77 1.13 3.20 16 10 C 0.22 10.88 4.25 85.64 0.36 11.24 16 11 C -0.54 -32.17 9.94 25.60 0.25 -31.92 16 12 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 13 C 0.01 0.78 5.47 84.65 0.46 1.25 16 14 N -0.94 -59.74 13.96 21.45 0.30 -59.44 16 15 Si 0.95 44.06 27.47 68.60 1.88 45.94 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.23 -9.63 6.54 99.48 0.65 -8.98 16 19 C -0.21 -5.59 6.55 22.64 0.15 -5.44 16 20 C 0.16 3.94 6.65 22.45 0.15 4.09 16 21 O -0.31 -6.07 9.53 -92.53 -0.88 -6.95 16 22 C 0.01 0.12 9.81 113.37 1.11 1.23 16 23 C -0.14 -3.62 5.91 -19.63 -0.12 -3.74 16 24 C -0.09 -1.76 9.55 71.23 0.68 -1.08 16 25 H 0.05 1.16 7.66 -2.39 -0.02 1.14 16 26 H 0.06 1.20 7.65 -2.39 -0.02 1.18 16 27 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.12 4.48 6.28 -2.91 -0.02 4.46 16 29 H 0.09 1.87 6.90 -2.38 -0.02 1.85 16 30 H 0.08 2.31 8.04 -2.39 -0.02 2.29 16 31 H 0.08 2.18 5.81 -2.38 -0.01 2.17 16 32 H 0.06 2.61 7.13 -2.39 -0.02 2.59 16 33 H 0.02 1.20 6.79 -2.39 -0.02 1.19 16 34 H 0.27 15.80 8.31 -92.71 -0.77 15.02 16 35 H 0.16 3.57 3.54 -2.91 -0.01 3.56 16 36 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.71 7.65 -2.39 -0.02 0.69 16 38 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.40 7.52 -2.39 -0.02 1.38 16 41 H 0.07 1.38 7.52 -2.38 -0.02 1.36 16 Total: -1.00 -80.06 336.15 5.09 -74.97 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.99 Total: 12.63 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 6.18 Total: 0.56 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -2.14 Total: -86.97 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -1.83 Total: -47.13 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -80.06 5.09 -74.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060617769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.905 kcal (2) G-P(sol) polarization free energy of solvation -80.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds