Wall clock time and date at job start Tue Mar 31 2020 06:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35911 * 117.00256 * 2 1 4 4 C 1.38508 * 119.95342 * 0.02562 * 3 2 1 5 5 C 1.39511 * 119.90581 * 180.02562 * 4 3 2 6 6 C 1.47876 * 120.09386 * 180.02562 * 5 4 3 7 7 O 1.21554 * 119.99707 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00116 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00056 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46845 * 35.00845 * 9 8 6 11 11 C 1.52997 * 109.47473 * 275.00296 * 9 8 6 12 12 C 1.50706 * 109.47187 * 154.99900 * 9 8 6 13 13 H 1.07998 * 119.99629 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99955 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00308 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46848 * 60.00326 * 16 14 12 18 18 H 1.48500 * 109.47035 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47237 * 300.00475 * 16 14 12 20 20 C 1.39515 * 119.81546 * 0.27320 * 5 4 3 21 21 C 1.38513 * 119.90335 * 359.45691 * 20 5 4 22 22 O 1.35909 * 119.95322 * 180.26976 * 21 20 5 23 23 C 1.42896 * 116.99867 * 0.27401 * 22 21 20 24 24 C 1.38728 * 120.09336 * 0.54390 * 21 20 5 25 25 C 1.50698 * 119.90695 * 179.70242 * 24 21 20 26 26 H 1.08998 * 109.47314 * 59.99479 * 1 2 3 27 27 H 1.08993 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46238 * 299.99882 * 1 2 3 29 29 H 1.07999 * 120.04815 * 0.04622 * 4 3 2 30 30 H 0.97001 * 120.00396 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47153 * 59.99757 * 11 9 8 32 32 H 1.09001 * 109.46832 * 299.99948 * 11 9 8 33 33 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 34 34 H 0.96998 * 120.00365 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.04639 * 179.71853 * 20 5 4 36 36 H 1.08998 * 109.47391 * 60.00028 * 23 22 21 37 37 H 1.09002 * 109.47189 * 179.97438 * 23 22 21 38 38 H 1.09003 * 109.47460 * 299.99882 * 23 22 21 39 39 H 1.09003 * 109.47184 * 270.02177 * 25 24 21 40 40 H 1.08999 * 109.47476 * 30.02490 * 25 24 21 41 41 H 1.09001 * 109.46910 * 150.02226 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2908 2.3720 0.0005 5 6 1.9253 3.6145 0.0000 6 6 1.1230 4.8567 0.0011 7 8 -0.0910 4.7961 0.0030 8 7 1.7378 6.0560 0.0011 9 6 0.9430 7.2866 0.0017 10 1 0.0391 7.1350 0.5916 11 6 0.5600 7.6471 -1.4350 12 6 1.7524 8.4071 0.6021 13 1 2.7584 8.2212 0.9482 14 6 1.2090 9.6698 0.7086 15 7 -0.0158 9.8963 0.2866 16 14 2.2125 11.0588 1.4521 17 1 3.4441 11.2649 0.6484 18 1 1.4068 12.3062 1.4528 19 1 2.5843 10.7094 2.8467 20 6 3.3188 3.6818 -0.0069 21 6 4.0665 2.5158 -0.0017 22 8 5.4240 2.5803 -0.0028 23 6 6.0117 3.8828 -0.0033 24 6 3.4316 1.2824 -0.0012 25 6 4.2492 0.0165 -0.0023 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 0.2123 2.3155 0.0017 30 1 2.7066 6.1044 0.0008 31 1 -0.0254 6.8367 -1.8693 32 1 1.4641 7.7988 -2.0248 33 1 -0.0318 8.5626 -1.4345 34 1 -0.3983 10.7845 0.3619 35 1 3.8138 4.6417 -0.0119 36 1 5.6935 4.4253 0.8869 37 1 7.0978 3.7914 -0.0038 38 1 5.6920 4.4253 -0.8931 39 1 4.4454 -0.2884 -1.0303 40 1 5.1944 0.1938 0.5108 41 1 3.6991 -0.7718 0.5117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346324.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:08 Heat of formation + Delta-G solvation = -91.598966 kcal Electronic energy + Delta-G solvation = -23579.631276 eV Core-core repulsion = 20039.358714 eV Total energy + Delta-G solvation = -3540.272563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74425 -39.06863 -38.84500 -36.19434 -34.85983 -33.03433 -32.29612 -29.71024 -29.01869 -27.84838 -27.49126 -26.50866 -25.28853 -22.72863 -21.86339 -21.03125 -19.68875 -18.68845 -17.00815 -16.76398 -16.41011 -16.09594 -15.78450 -15.57638 -15.27076 -15.12448 -14.64959 -14.21558 -14.05552 -13.41600 -13.40742 -13.06643 -12.58018 -12.52389 -12.27929 -12.09590 -11.80021 -11.74096 -11.58676 -11.44359 -11.14044 -11.06285 -11.00640 -10.82466 -10.58217 -10.36142 -10.27059 -9.22228 -9.09727 -8.59494 -8.33278 -8.17478 -7.95450 -6.15865 -4.25734 0.95436 1.39651 2.80384 3.21851 3.23096 3.28413 3.29249 3.56621 3.94176 4.09235 4.32873 4.73394 4.87993 4.90273 4.99942 5.11074 5.12349 5.15151 5.16501 5.23044 5.38752 5.42652 5.43730 5.59126 5.67487 5.69956 5.99441 6.15842 6.30686 6.38645 6.41862 6.78982 6.92527 7.10150 7.18697 7.30748 7.38290 7.50873 7.64574 7.86666 8.10200 8.57752 8.72120 9.01868 9.41617 10.90136 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.004072 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.968959 B = 6875.155251 C = 8083.023988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.152 3.848 4 C -0.185 4.185 5 C -0.048 4.048 6 C 0.541 3.459 7 O -0.547 6.547 8 N -0.698 5.698 9 C 0.263 3.737 10 H 0.051 0.949 11 C -0.147 4.147 12 C -0.536 4.536 13 H 0.060 0.940 14 C 0.068 3.932 15 N -0.883 5.883 16 Si 0.902 3.098 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.208 4.208 21 C 0.154 3.846 22 O -0.311 6.311 23 C 0.023 3.977 24 C -0.137 4.137 25 C -0.093 4.093 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.143 0.857 30 H 0.387 0.613 31 H 0.015 0.985 32 H 0.027 0.973 33 H 0.091 0.909 34 H 0.266 0.734 35 H 0.136 0.864 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.590 -16.593 -1.258 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.106 3.894 4 C -0.205 4.205 5 C -0.052 4.052 6 C 0.326 3.674 7 O -0.427 6.427 8 N -0.346 5.346 9 C 0.162 3.838 10 H 0.069 0.931 11 C -0.206 4.206 12 C -0.574 4.574 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.520 5.520 16 Si 0.730 3.270 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.228 4.228 21 C 0.109 3.891 22 O -0.224 6.224 23 C -0.072 4.072 24 C -0.139 4.139 25 C -0.150 4.150 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.161 0.839 30 H 0.221 0.779 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.790 -16.761 -1.272 18.526 hybrid contribution 0.670 1.409 0.363 1.602 sum 8.460 -15.351 -0.909 17.551 Atomic orbital electron populations 1.23120 0.77916 1.03836 1.02143 1.86016 1.21625 1.26215 1.88606 1.18249 0.90762 0.84252 0.96118 1.21232 1.01060 0.90542 1.07616 1.19818 0.92690 0.94121 0.98525 1.18180 0.87556 0.83606 0.78044 1.90720 1.13588 1.87306 1.51108 1.46497 1.10288 1.06535 1.71266 1.18812 0.91922 0.78902 0.94171 0.93134 1.22081 0.99579 1.01693 0.97211 1.21150 1.00725 0.93801 1.41758 0.92147 1.24877 0.95050 0.98572 0.95091 1.69885 1.13960 1.22484 1.45649 0.86498 0.79877 0.80991 0.79671 1.20139 1.21069 1.20146 1.21330 0.93815 0.97847 1.09811 1.18216 0.82503 0.92460 0.95951 1.86024 1.16721 1.31122 1.88578 1.23146 0.98888 0.83076 1.02083 1.18384 0.90555 0.94200 1.10759 1.20409 0.98854 0.93568 1.02138 0.92230 0.88172 0.92231 0.83929 0.77915 0.96576 0.95414 0.89002 0.92446 0.84671 0.92160 0.88084 0.92197 0.91652 0.91331 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.23 16 2 O -0.31 -3.87 9.52 -19.46 -0.19 -4.06 16 3 C 0.15 2.16 6.65 -39.30 -0.26 1.89 16 4 C -0.18 -2.93 8.58 -39.01 -0.33 -3.27 16 5 C -0.05 -0.83 5.87 -105.00 -0.62 -1.45 16 6 C 0.54 11.44 7.74 -12.32 -0.10 11.35 16 7 O -0.55 -13.42 16.00 5.32 0.09 -13.34 16 8 N -0.70 -14.90 5.02 -55.87 -0.28 -15.18 16 9 C 0.26 6.73 2.56 -69.08 -0.18 6.55 16 10 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 11 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 12 C -0.54 -14.08 8.73 -34.44 -0.30 -14.38 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 15 N -0.88 -24.66 11.32 55.43 0.63 -24.04 16 16 Si 0.90 20.38 29.54 -169.99 -5.02 15.35 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 C -0.21 -3.08 8.52 -39.00 -0.33 -3.41 16 21 C 0.15 2.13 6.65 -39.30 -0.26 1.87 16 22 O -0.31 -3.77 9.52 -19.46 -0.19 -3.96 16 23 C 0.02 0.21 9.81 101.05 0.99 1.20 16 24 C -0.14 -1.88 5.91 -104.26 -0.62 -2.50 16 25 C -0.09 -1.04 9.56 36.00 0.34 -0.69 16 26 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 29 H 0.14 2.24 5.87 -52.49 -0.31 1.93 16 30 H 0.39 7.12 6.57 -40.82 -0.27 6.85 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.14 1.78 4.62 -52.49 -0.24 1.54 16 36 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.52 7.64 -51.93 -0.40 0.12 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.72 7.52 -51.93 -0.39 0.33 16 41 H 0.07 0.72 7.52 -51.93 -0.39 0.33 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -31.51 340.31 -5.80 -37.31 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.55 Total: 6.01 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -0.42 Total: -3.23 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.35 Total: -39.22 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.29 Total: -21.36 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.51 -5.80 -37.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346324.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.288 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds