Wall clock time and date at job start Tue Mar 31 2020 06:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35911 * 117.00256 * 2 1 4 4 C 1.38508 * 119.95342 * 0.02562 * 3 2 1 5 5 C 1.39511 * 119.90581 * 180.02562 * 4 3 2 6 6 C 1.47876 * 120.09386 * 180.02562 * 5 4 3 7 7 O 1.21554 * 119.99707 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00116 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00056 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46845 * 35.00845 * 9 8 6 11 11 C 1.52997 * 109.47473 * 275.00296 * 9 8 6 12 12 C 1.50706 * 109.47187 * 154.99900 * 9 8 6 13 13 H 1.07998 * 119.99629 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99955 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00308 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46848 * 60.00326 * 16 14 12 18 18 H 1.48500 * 109.47035 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47237 * 300.00475 * 16 14 12 20 20 C 1.39515 * 119.81546 * 0.27320 * 5 4 3 21 21 C 1.38513 * 119.90335 * 359.45691 * 20 5 4 22 22 O 1.35909 * 119.95322 * 180.26976 * 21 20 5 23 23 C 1.42896 * 116.99867 * 0.27401 * 22 21 20 24 24 C 1.38728 * 120.09336 * 0.54390 * 21 20 5 25 25 C 1.50698 * 119.90695 * 179.70242 * 24 21 20 26 26 H 1.08998 * 109.47314 * 59.99479 * 1 2 3 27 27 H 1.08993 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46238 * 299.99882 * 1 2 3 29 29 H 1.07999 * 120.04815 * 0.04622 * 4 3 2 30 30 H 0.97001 * 120.00396 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47153 * 59.99757 * 11 9 8 32 32 H 1.09001 * 109.46832 * 299.99948 * 11 9 8 33 33 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 34 34 H 0.96998 * 120.00365 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.04639 * 179.71853 * 20 5 4 36 36 H 1.08998 * 109.47391 * 60.00028 * 23 22 21 37 37 H 1.09002 * 109.47189 * 179.97438 * 23 22 21 38 38 H 1.09003 * 109.47460 * 299.99882 * 23 22 21 39 39 H 1.09003 * 109.47184 * 270.02177 * 25 24 21 40 40 H 1.08999 * 109.47476 * 30.02490 * 25 24 21 41 41 H 1.09001 * 109.46910 * 150.02226 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2908 2.3720 0.0005 5 6 1.9253 3.6145 0.0000 6 6 1.1230 4.8567 0.0011 7 8 -0.0910 4.7961 0.0030 8 7 1.7378 6.0560 0.0011 9 6 0.9430 7.2866 0.0017 10 1 0.0391 7.1350 0.5916 11 6 0.5600 7.6471 -1.4350 12 6 1.7524 8.4071 0.6021 13 1 2.7584 8.2212 0.9482 14 6 1.2090 9.6698 0.7086 15 7 -0.0158 9.8963 0.2866 16 14 2.2125 11.0588 1.4521 17 1 3.4441 11.2649 0.6484 18 1 1.4068 12.3062 1.4528 19 1 2.5843 10.7094 2.8467 20 6 3.3188 3.6818 -0.0069 21 6 4.0665 2.5158 -0.0017 22 8 5.4240 2.5803 -0.0028 23 6 6.0117 3.8828 -0.0033 24 6 3.4316 1.2824 -0.0012 25 6 4.2492 0.0165 -0.0023 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 0.2123 2.3155 0.0017 30 1 2.7066 6.1044 0.0008 31 1 -0.0254 6.8367 -1.8693 32 1 1.4641 7.7988 -2.0248 33 1 -0.0318 8.5626 -1.4345 34 1 -0.3983 10.7845 0.3619 35 1 3.8138 4.6417 -0.0119 36 1 5.6935 4.4253 0.8869 37 1 7.0978 3.7914 -0.0038 38 1 5.6920 4.4253 -0.8931 39 1 4.4454 -0.2884 -1.0303 40 1 5.1944 0.1938 0.5108 41 1 3.6991 -0.7718 0.5117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064346324.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:07 Heat of formation + Delta-G solvation = -112.478890 kcal Electronic energy + Delta-G solvation = -23580.536698 eV Core-core repulsion = 20039.358714 eV Total energy + Delta-G solvation = -3541.177984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.88293 -40.45368 -40.01735 -37.32933 -36.75666 -34.55207 -33.85257 -31.17832 -30.48911 -28.71928 -28.40978 -27.61817 -27.33629 -24.14184 -22.99528 -22.50604 -21.35169 -20.12316 -18.38892 -18.13476 -17.42418 -17.31822 -17.05161 -16.93884 -16.51603 -16.44487 -16.07122 -15.85249 -15.45374 -14.76074 -14.48429 -14.30231 -14.28013 -13.76087 -13.44266 -13.34073 -13.08526 -13.00995 -12.86540 -12.76055 -12.60613 -12.44192 -12.40744 -12.28901 -12.18327 -12.09033 -11.69764 -11.16036 -10.94426 -10.61278 -9.90687 -9.35421 -9.27515 -8.18982 -6.37272 -0.30072 0.27579 1.45166 1.47411 1.55233 1.81511 1.87624 2.27641 2.49637 2.66271 2.71236 3.11681 3.52040 3.78496 3.85274 3.99404 4.12005 4.33372 4.36026 4.40259 4.43726 4.52082 4.69010 4.72181 4.73191 4.80747 4.85837 4.87524 4.88457 5.04460 5.14197 5.16682 5.28937 5.38318 5.44412 5.53991 5.63568 5.85063 6.05060 6.20801 6.29934 6.67853 6.82442 7.25628 7.41189 8.87418 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.004072 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.968959 B = 6875.155251 C = 8083.023988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.312 6.312 3 C 0.153 3.847 4 C -0.194 4.194 5 C -0.070 4.070 6 C 0.540 3.460 7 O -0.591 6.591 8 N -0.693 5.693 9 C 0.269 3.731 10 H 0.001 0.999 11 C -0.134 4.134 12 C -0.550 4.550 13 H 0.075 0.925 14 C 0.016 3.984 15 N -0.917 5.917 16 Si 0.974 3.026 17 H -0.262 1.262 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.204 4.204 21 C 0.157 3.843 22 O -0.312 6.312 23 C 0.012 3.988 24 C -0.137 4.137 25 C -0.090 4.090 26 H 0.057 0.943 27 H 0.133 0.867 28 H 0.056 0.944 29 H 0.136 0.864 30 H 0.403 0.597 31 H 0.011 0.989 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.266 0.734 35 H 0.149 0.851 36 H 0.062 0.938 37 H 0.130 0.870 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.397 -17.523 -1.067 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.225 6.225 3 C 0.107 3.893 4 C -0.213 4.213 5 C -0.073 4.073 6 C 0.328 3.672 7 O -0.474 6.474 8 N -0.342 5.342 9 C 0.166 3.834 10 H 0.019 0.981 11 C -0.193 4.193 12 C -0.587 4.587 13 H 0.093 0.907 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.798 3.202 17 H -0.186 1.186 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.223 4.223 21 C 0.111 3.889 22 O -0.225 6.225 23 C -0.082 4.082 24 C -0.139 4.139 25 C -0.146 4.146 26 H 0.076 0.924 27 H 0.151 0.849 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.240 0.760 31 H 0.030 0.970 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.167 0.833 36 H 0.081 0.919 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.642 -17.715 -1.085 20.694 hybrid contribution -0.195 1.585 0.299 1.625 sum 10.447 -16.129 -0.787 19.233 Atomic orbital electron populations 1.23380 0.76412 1.05947 1.01927 1.86024 1.23112 1.25101 1.88249 1.18276 0.91108 0.84244 0.95692 1.21235 1.01017 0.90898 1.08195 1.19455 0.93417 0.92434 1.02011 1.18754 0.87359 0.84581 0.76529 1.90685 1.15694 1.88009 1.52989 1.46217 1.10831 1.05609 1.71495 1.18453 0.90792 0.80598 0.93572 0.98077 1.21907 0.99726 1.00392 0.97234 1.21474 1.01339 0.94066 1.41870 0.90686 1.25802 0.96025 1.01231 0.95341 1.70040 1.15700 1.23066 1.46673 0.85370 0.78512 0.77337 0.78958 1.18637 1.21198 1.19584 1.21392 0.92677 0.99102 1.09140 1.18247 0.83400 0.92036 0.95238 1.86044 1.15373 1.32926 1.88129 1.23465 1.00424 0.81927 1.02416 1.18795 0.90637 0.95393 1.09076 1.20465 0.98792 0.92340 1.03047 0.92447 0.84881 0.92526 0.84643 0.76029 0.97006 0.93908 0.91137 0.92447 0.83346 0.91902 0.85232 0.91765 0.90518 0.90481 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.31 -7.28 9.52 -92.55 -0.88 -8.16 16 3 C 0.15 4.18 6.65 22.45 0.15 4.33 16 4 C -0.19 -6.20 8.58 22.64 0.19 -6.00 16 5 C -0.07 -2.43 5.87 -20.11 -0.12 -2.55 16 6 C 0.54 23.57 7.74 86.80 0.67 24.24 16 7 O -0.59 -30.52 16.00 -3.89 -0.06 -30.59 16 8 N -0.69 -30.04 5.02 -448.95 -2.25 -32.29 16 9 C 0.27 14.15 2.56 44.25 0.11 14.26 16 10 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 11 C -0.13 -6.86 9.26 71.98 0.67 -6.19 16 12 C -0.55 -28.91 8.73 25.60 0.22 -28.68 16 13 H 0.08 3.64 7.74 -2.91 -0.02 3.61 16 14 C 0.02 0.87 5.30 84.65 0.45 1.32 16 15 N -0.92 -52.29 11.32 21.45 0.24 -52.05 16 16 Si 0.97 41.30 29.54 68.60 2.03 43.33 16 17 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 18 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 C -0.20 -5.78 8.52 22.64 0.19 -5.58 16 21 C 0.16 4.02 6.65 22.45 0.15 4.17 16 22 O -0.31 -6.66 9.52 -92.53 -0.88 -7.54 16 23 C 0.01 0.18 9.81 113.37 1.11 1.29 16 24 C -0.14 -3.49 5.91 -19.63 -0.12 -3.60 16 25 C -0.09 -1.75 9.56 71.24 0.68 -1.07 16 26 H 0.06 1.05 7.66 -2.39 -0.02 1.04 16 27 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.05 7.65 -2.39 -0.02 1.03 16 29 H 0.14 4.43 5.87 -2.91 -0.02 4.41 16 30 H 0.40 14.62 6.57 -92.71 -0.61 14.01 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 3.92 6.07 -2.38 -0.01 3.91 16 34 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.15 3.66 4.62 -2.91 -0.01 3.65 16 36 H 0.06 0.94 7.67 -2.39 -0.02 0.92 16 37 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 0.93 7.64 -2.39 -0.02 0.92 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.38 7.52 -2.39 -0.02 1.36 16 41 H 0.07 1.37 7.52 -2.39 -0.02 1.35 16 Total: -1.00 -69.33 340.31 4.12 -65.21 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.45 Total: 24.74 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 5.48 Total: -2.64 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.01 Total: -84.35 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -1.82 Total: -46.30 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -69.33 4.12 -65.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346324.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.267 kcal (2) G-P(sol) polarization free energy of solvation -69.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds