Wall clock time and date at job start Tue Mar 31 2020 06:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46849 * 2 1 4 4 N 1.29024 * 124.92047 * 89.99600 * 3 2 1 5 5 C 1.31791 * 117.12310 * 179.97438 * 4 3 2 6 6 C 1.50698 * 122.74752 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46959 * 275.02704 * 6 5 4 8 8 C 1.46904 * 111.00216 * 66.04890 * 7 6 5 9 9 C 1.46904 * 111.00181 * 189.99808 * 7 6 5 10 10 C 1.53002 * 109.46749 * 75.66881 * 9 7 6 11 11 H 1.08993 * 109.47713 * 304.76717 * 10 9 7 12 12 C 1.47205 * 109.46898 * 64.76583 * 10 9 7 13 13 N 8.29159 * 85.28504 * 7.53952 * 2 1 3 14 14 C 1.52995 * 109.47225 * 184.75940 * 10 9 7 15 15 C 1.50696 * 109.47319 * 175.00321 * 14 10 9 16 16 H 1.07999 * 120.00399 * 0.02562 * 15 14 10 17 17 C 1.37885 * 120.00274 * 180.02562 * 15 14 10 18 18 N 1.31512 * 119.99570 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00051 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47156 * 90.00147 * 19 17 15 21 21 H 1.48506 * 109.46869 * 209.99978 * 19 17 15 22 22 H 1.48498 * 109.47219 * 329.99504 * 19 17 15 23 23 C 1.33642 * 114.49815 * 0.23574 * 5 4 3 24 24 S 1.70982 * 124.91178 * 269.99361 * 3 2 1 25 25 H 1.09001 * 109.47530 * 300.00115 * 1 2 3 26 26 H 1.08996 * 109.47152 * 60.01026 * 1 2 3 27 27 H 1.09001 * 109.47029 * 180.02562 * 1 2 3 28 28 H 1.08989 * 109.47254 * 239.99531 * 2 1 3 29 29 H 1.09001 * 109.46663 * 119.99487 * 2 1 3 30 30 H 1.08993 * 109.47274 * 155.02928 * 6 5 4 31 31 H 1.09005 * 109.46827 * 35.02321 * 6 5 4 32 32 H 1.08995 * 109.47095 * 188.00723 * 8 7 6 33 33 H 1.09000 * 109.46955 * 308.00345 * 8 7 6 34 34 H 1.09001 * 109.47177 * 68.00090 * 8 7 6 35 35 H 1.08998 * 109.46820 * 315.67375 * 9 7 6 36 36 H 1.08997 * 109.47314 * 195.67434 * 9 7 6 37 37 H 1.09002 * 109.47429 * 295.00894 * 14 10 9 38 38 H 1.08999 * 109.47061 * 55.00228 * 14 10 9 39 39 H 0.97006 * 120.00024 * 179.97438 * 18 17 15 40 40 H 1.07994 * 126.03017 * 179.76503 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1172 1.0579 5 6 2.7141 3.3481 0.8791 6 6 3.0400 4.2719 2.0243 7 7 1.8144 4.9453 2.4742 8 6 0.8697 3.9841 3.0586 9 6 2.1240 6.0228 3.4236 10 6 2.6866 7.2258 2.6639 11 1 3.5465 6.9121 2.0721 12 6 1.6502 7.7715 1.7722 13 7 0.8485 8.1921 1.0843 14 6 3.1193 8.3020 3.6614 15 6 3.7850 9.4339 2.9221 16 1 3.8889 9.3902 1.8480 17 6 4.2618 10.5253 3.6168 18 7 4.1349 10.5788 4.9247 19 14 5.0864 11.9286 2.7002 20 1 4.0651 12.9343 2.3123 21 1 6.0999 12.5658 3.5789 22 1 5.7499 11.4011 1.4809 23 6 2.8379 3.7117 -0.4009 24 16 2.3586 2.3434 -1.4021 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 3.7641 5.0171 1.6952 31 1 3.4609 3.6950 2.8479 32 1 -0.0808 4.4810 3.2527 33 1 0.7133 3.1596 2.3630 34 1 1.2757 3.5984 3.9938 35 1 2.8618 5.6709 4.1445 36 1 1.2150 6.3170 3.9482 37 1 2.2445 8.6790 4.1914 38 1 3.8207 7.8732 4.3771 39 1 4.4706 11.3464 5.4136 40 1 3.1738 4.6738 -0.7584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067996896.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:37 Heat of formation + Delta-G solvation = 59.675194 kcal Electronic energy + Delta-G solvation = -20587.604242 eV Core-core repulsion = 17528.937041 eV Total energy + Delta-G solvation = -3058.667201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.16719 -37.81932 -35.63377 -34.27514 -33.52572 -31.68925 -30.26647 -27.40057 -27.22419 -25.65823 -24.42792 -22.40777 -21.72616 -21.08900 -19.77129 -17.78353 -16.78037 -16.49966 -15.80539 -15.22462 -15.01683 -14.83581 -14.64103 -14.39364 -14.00993 -13.57304 -13.17547 -12.89280 -12.79307 -12.53605 -12.32880 -12.06036 -11.93318 -11.78146 -11.70905 -11.53080 -11.41301 -11.29349 -11.12915 -11.01667 -10.68311 -10.52046 -10.17069 -9.73955 -9.53603 -9.45297 -9.22363 -8.85341 -8.45487 -8.18053 -6.09470 -4.12495 0.63956 1.26676 1.64479 2.64712 3.29883 3.36503 3.39493 3.74672 3.83405 3.87127 4.21159 4.42095 4.63916 4.82453 4.89688 4.92180 5.03824 5.20340 5.28764 5.33818 5.38982 5.46889 5.49739 5.57672 5.59315 5.71325 5.80599 5.85237 5.88950 6.01767 6.05846 6.18526 6.36550 6.50210 7.12888 7.16541 7.43179 7.53597 7.67615 7.85839 8.23577 8.61194 8.92269 9.52903 11.01460 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.003209 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.291303 B = 8723.353745 C = 9112.695634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 C 0.046 3.954 4 N -0.464 5.464 5 C 0.078 3.922 6 C 0.125 3.875 7 N -0.541 5.541 8 C 0.027 3.973 9 C 0.062 3.938 10 C 0.012 3.988 11 H 0.098 0.902 12 C 0.257 3.743 13 N -0.482 5.482 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.233 4.233 24 S 0.104 5.896 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.038 0.962 39 H 0.262 0.738 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 -22.368 -7.820 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.233 4.233 4 N -0.179 5.179 5 C -0.053 4.053 6 C -0.006 4.006 7 N -0.265 5.265 8 C -0.122 4.122 9 C -0.067 4.067 10 C -0.010 4.010 11 H 0.116 0.884 12 C -0.059 4.059 13 N -0.159 5.159 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.373 4.373 24 S 0.358 5.642 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.314 -21.839 -9.674 24.272 hybrid contribution 1.368 1.080 1.175 2.102 sum -2.946 -20.759 -8.499 22.624 Atomic orbital electron populations 1.21767 0.93549 1.02412 1.02814 1.20184 0.96692 0.87664 1.04041 1.26990 1.03562 1.01692 0.91032 1.66091 1.14336 1.05946 1.31532 1.20103 1.00243 0.90721 0.94246 1.20681 0.92497 0.94144 0.93251 1.62008 1.12444 1.11725 1.40310 1.22398 0.95878 0.95767 0.98115 1.22275 1.01305 0.90075 0.93002 1.19233 0.91734 0.95238 0.94825 0.88382 1.28897 0.93188 0.91164 0.92696 1.81024 1.11931 1.11404 1.11494 1.19175 0.97275 0.91348 0.92966 1.21137 1.38297 1.03288 0.93642 0.92514 1.24953 0.95921 0.98275 0.94817 1.69938 1.46400 1.30451 1.06242 0.86599 0.79297 0.82480 0.79748 1.20650 1.21112 1.19744 1.26860 1.10966 1.03793 0.95651 1.83914 1.61026 1.06069 1.13147 0.91886 0.92390 0.91502 0.89849 0.88911 0.88477 0.92725 0.91888 0.90850 0.95490 0.92353 0.90078 0.95572 0.94418 0.92802 0.80413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.04 -0.33 6.52 -27.88 -0.18 -0.51 16 3 C 0.05 0.48 6.64 -13.46 -0.09 0.39 16 4 N -0.46 -5.87 9.11 -8.05 -0.07 -5.94 16 5 C 0.08 1.01 5.59 -84.22 -0.47 0.54 16 6 C 0.12 1.62 5.23 -4.98 -0.03 1.59 16 7 N -0.54 -7.75 4.38 -244.37 -1.07 -8.82 16 8 C 0.03 0.35 9.36 60.07 0.56 0.91 16 9 C 0.06 0.94 4.36 -3.82 -0.02 0.92 16 10 C 0.01 0.22 2.26 -93.41 -0.21 0.01 16 11 H 0.10 1.68 6.66 -51.93 -0.35 1.33 16 12 C 0.26 5.42 13.67 -20.72 -0.28 5.14 16 13 N -0.48 -11.05 18.54 42.20 0.78 -10.27 16 14 C 0.03 0.71 4.42 -27.89 -0.12 0.59 16 15 C -0.53 -13.93 8.60 -34.44 -0.30 -14.23 16 16 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.23 -2.82 11.12 29.12 0.32 -2.49 16 24 S 0.10 1.04 23.18 -107.50 -2.49 -1.45 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.45 8.14 -51.94 -0.42 0.03 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 1.20 6.52 -51.93 -0.34 0.86 16 31 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.99 6.02 -51.93 -0.31 0.68 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.81 8.00 -51.93 -0.42 0.39 16 36 H 0.08 1.24 7.94 -51.93 -0.41 0.83 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -31.04 352.96 -8.37 -39.41 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -6.01 Total: -3.62 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.54 Total: -6.14 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.38 Total: -49.79 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.04 -8.37 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067996896.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.085 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds