Wall clock time and date at job start Tue Mar 31 2020 06:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46849 * 2 1 4 4 N 1.29024 * 124.92047 * 89.99600 * 3 2 1 5 5 C 1.31791 * 117.12310 * 179.97438 * 4 3 2 6 6 C 1.50698 * 122.74752 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46959 * 275.02704 * 6 5 4 8 8 C 1.46904 * 111.00216 * 66.04890 * 7 6 5 9 9 C 1.46904 * 111.00181 * 189.99808 * 7 6 5 10 10 C 1.53002 * 109.46749 * 75.66881 * 9 7 6 11 11 H 1.08993 * 109.47713 * 304.76717 * 10 9 7 12 12 C 1.47205 * 109.46898 * 64.76583 * 10 9 7 13 13 N 8.29159 * 85.28504 * 7.53952 * 2 1 3 14 14 C 1.52995 * 109.47225 * 184.75940 * 10 9 7 15 15 C 1.50696 * 109.47319 * 175.00321 * 14 10 9 16 16 H 1.07999 * 120.00399 * 0.02562 * 15 14 10 17 17 C 1.37885 * 120.00274 * 180.02562 * 15 14 10 18 18 N 1.31512 * 119.99570 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00051 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47156 * 90.00147 * 19 17 15 21 21 H 1.48506 * 109.46869 * 209.99978 * 19 17 15 22 22 H 1.48498 * 109.47219 * 329.99504 * 19 17 15 23 23 C 1.33642 * 114.49815 * 0.23574 * 5 4 3 24 24 S 1.70982 * 124.91178 * 269.99361 * 3 2 1 25 25 H 1.09001 * 109.47530 * 300.00115 * 1 2 3 26 26 H 1.08996 * 109.47152 * 60.01026 * 1 2 3 27 27 H 1.09001 * 109.47029 * 180.02562 * 1 2 3 28 28 H 1.08989 * 109.47254 * 239.99531 * 2 1 3 29 29 H 1.09001 * 109.46663 * 119.99487 * 2 1 3 30 30 H 1.08993 * 109.47274 * 155.02928 * 6 5 4 31 31 H 1.09005 * 109.46827 * 35.02321 * 6 5 4 32 32 H 1.08995 * 109.47095 * 188.00723 * 8 7 6 33 33 H 1.09000 * 109.46955 * 308.00345 * 8 7 6 34 34 H 1.09001 * 109.47177 * 68.00090 * 8 7 6 35 35 H 1.08998 * 109.46820 * 315.67375 * 9 7 6 36 36 H 1.08997 * 109.47314 * 195.67434 * 9 7 6 37 37 H 1.09002 * 109.47429 * 295.00894 * 14 10 9 38 38 H 1.08999 * 109.47061 * 55.00228 * 14 10 9 39 39 H 0.97006 * 120.00024 * 179.97438 * 18 17 15 40 40 H 1.07994 * 126.03017 * 179.76503 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1172 1.0579 5 6 2.7141 3.3481 0.8791 6 6 3.0400 4.2719 2.0243 7 7 1.8144 4.9453 2.4742 8 6 0.8697 3.9841 3.0586 9 6 2.1240 6.0228 3.4236 10 6 2.6866 7.2258 2.6639 11 1 3.5465 6.9121 2.0721 12 6 1.6502 7.7715 1.7722 13 7 0.8485 8.1921 1.0843 14 6 3.1193 8.3020 3.6614 15 6 3.7850 9.4339 2.9221 16 1 3.8889 9.3902 1.8480 17 6 4.2618 10.5253 3.6168 18 7 4.1349 10.5788 4.9247 19 14 5.0864 11.9286 2.7002 20 1 4.0651 12.9343 2.3123 21 1 6.0999 12.5658 3.5789 22 1 5.7499 11.4011 1.4809 23 6 2.8379 3.7117 -0.4009 24 16 2.3586 2.3434 -1.4021 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 3.7641 5.0171 1.6952 31 1 3.4609 3.6950 2.8479 32 1 -0.0808 4.4810 3.2527 33 1 0.7133 3.1596 2.3630 34 1 1.2757 3.5984 3.9938 35 1 2.8618 5.6709 4.1445 36 1 1.2150 6.3170 3.9482 37 1 2.2445 8.6790 4.1914 38 1 3.8207 7.8732 4.3771 39 1 4.4706 11.3464 5.4136 40 1 3.1738 4.6738 -0.7584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067996896.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:36 Heat of formation + Delta-G solvation = 41.441577 kcal Electronic energy + Delta-G solvation = -20588.394911 eV Core-core repulsion = 17528.937041 eV Total energy + Delta-G solvation = -3059.457870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05955 -39.11020 -37.12885 -35.49924 -34.90912 -33.43092 -31.14303 -29.03889 -28.18389 -26.58681 -25.76376 -23.64663 -23.29119 -22.05253 -20.63336 -18.68631 -18.52977 -18.15269 -16.90651 -16.55481 -16.24871 -15.92072 -15.81830 -15.30945 -14.97214 -14.84485 -14.45016 -14.26724 -14.09317 -13.80803 -13.69213 -13.24722 -13.11089 -13.01176 -12.89960 -12.79853 -12.70297 -12.49517 -12.48231 -12.35695 -12.16676 -11.97343 -11.76971 -11.37218 -11.12264 -10.56616 -10.54581 -10.30161 -9.71054 -9.26285 -8.18494 -6.26397 -0.20321 0.45940 0.79945 1.40458 1.42873 1.51710 1.73904 2.06938 2.15113 2.42246 2.99593 3.16973 3.20313 3.36891 3.89509 4.05922 4.16045 4.23848 4.33000 4.35436 4.38218 4.43627 4.62349 4.70794 4.71813 4.75835 4.86708 4.89698 4.96284 5.00656 5.03296 5.09290 5.25408 5.35817 5.48396 5.62735 5.80249 6.01963 6.05817 6.22835 6.82228 6.84498 6.94704 7.42017 8.92470 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.003209 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.291303 B = 8723.353745 C = 9112.695634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C 0.043 3.957 4 N -0.488 5.488 5 C 0.065 3.935 6 C 0.125 3.875 7 N -0.552 5.552 8 C 0.033 3.967 9 C 0.072 3.928 10 C 0.023 3.977 11 H 0.117 0.883 12 C 0.268 3.732 13 N -0.516 5.516 14 C 0.038 3.962 15 C -0.537 4.537 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.924 5.924 19 Si 0.947 3.053 20 H -0.285 1.285 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.256 4.256 24 S 0.138 5.862 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.001 0.999 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 -23.867 -8.763 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.235 4.235 4 N -0.203 5.203 5 C -0.066 4.066 6 C -0.005 4.005 7 N -0.276 5.276 8 C -0.115 4.115 9 C -0.056 4.056 10 C 0.001 3.999 11 H 0.135 0.865 12 C -0.048 4.048 13 N -0.194 5.194 14 C -0.001 4.001 15 C -0.575 4.575 16 H 0.073 0.927 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.773 3.227 20 H -0.211 1.211 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.396 4.396 24 S 0.394 5.606 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.019 0.981 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.896 -23.355 -10.634 25.956 hybrid contribution 1.210 1.477 1.426 2.383 sum -2.686 -21.878 -9.208 23.888 Atomic orbital electron populations 1.21751 0.93075 1.03548 1.01851 1.20371 0.96956 0.85925 1.05381 1.27607 1.02268 1.02749 0.90885 1.66114 1.15553 1.06089 1.32584 1.20133 1.00937 0.91116 0.94431 1.20696 0.91901 0.94298 0.93596 1.61929 1.13371 1.12114 1.40195 1.22330 0.95535 0.95254 0.98372 1.22101 1.01544 0.89169 0.92834 1.19188 0.91881 0.95020 0.93787 0.86519 1.29387 0.92896 0.90333 0.92215 1.81021 1.13214 1.12385 1.12765 1.18993 0.95883 0.91755 0.93444 1.21547 1.37882 1.04309 0.93790 0.92737 1.25702 0.96790 1.00688 0.95557 1.70031 1.47599 1.31267 1.07457 0.85718 0.78378 0.79624 0.79024 1.21114 1.20402 1.18739 1.27035 1.11511 1.04849 0.96167 1.83743 1.60120 1.04659 1.12117 0.93585 0.92575 0.89350 0.87529 0.88523 0.88176 0.92268 0.92076 0.91252 0.94467 0.90532 0.90347 0.98059 0.94491 0.92736 0.80231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 71.98 0.71 -0.94 16 2 C -0.05 -0.56 6.52 29.85 0.19 -0.37 16 3 C 0.04 0.84 6.64 88.52 0.59 1.43 16 4 N -0.49 -11.80 9.11 -179.40 -1.63 -13.43 16 5 C 0.07 1.63 5.59 41.52 0.23 1.86 16 6 C 0.12 3.10 5.23 85.56 0.45 3.54 16 7 N -0.55 -15.17 4.38 -927.05 -4.06 -19.23 16 8 C 0.03 0.83 9.36 127.69 1.19 2.02 16 9 C 0.07 2.10 4.36 86.30 0.38 2.47 16 10 C 0.02 0.83 2.26 -12.60 -0.03 0.80 16 11 H 0.12 3.81 6.66 -2.39 -0.02 3.79 16 12 C 0.27 11.17 13.67 89.43 1.22 12.39 16 13 N -0.52 -23.61 18.54 20.02 0.37 -23.24 16 14 C 0.04 1.74 4.42 29.84 0.13 1.88 16 15 C -0.54 -28.32 8.60 25.60 0.22 -28.10 16 16 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 17 C 0.01 0.63 5.46 84.66 0.46 1.09 16 18 N -0.92 -52.99 13.29 21.45 0.28 -52.70 16 19 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 23 C -0.26 -5.96 11.12 66.78 0.74 -5.21 16 24 S 0.14 2.56 23.18 -56.49 -1.31 1.25 16 25 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 2.35 6.52 -2.39 -0.02 2.34 16 31 H 0.06 1.40 8.12 -2.38 -0.02 1.38 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.82 6.02 -2.39 -0.01 1.80 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.97 8.00 -2.39 -0.02 1.95 16 36 H 0.08 2.33 7.94 -2.39 -0.02 2.31 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 40 H 0.18 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -65.42 352.96 3.20 -62.21 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.03 Total: 6.89 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 6.50 Total: -7.13 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -5.04 Total: -108.61 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.31 Total: 1.25 kcal Total: -65.42 3.20 -62.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067996896.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.655 kcal (2) G-P(sol) polarization free energy of solvation -65.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds