Wall clock time and date at job start Tue Mar 31 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99891 * 2 1 4 4 C 1.53006 * 109.47098 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47095 * 64.99481 * 4 3 2 6 6 C 1.46501 * 119.99975 * 282.83490 * 5 4 3 7 7 C 1.50698 * 109.46979 * 264.96670 * 6 5 4 8 8 H 1.07995 * 120.00287 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99776 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00131 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00230 * 179.97438 * 9 7 6 12 12 H 1.48512 * 109.46864 * 60.00134 * 11 9 7 13 13 H 1.48496 * 109.47261 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47239 * 300.00706 * 11 9 7 15 15 C 1.34773 * 119.99464 * 102.83981 * 5 4 3 16 16 O 1.21598 * 119.99397 * 186.97915 * 15 5 4 17 17 C 1.47531 * 120.00559 * 6.97874 * 15 5 4 18 18 C 1.39710 * 120.19223 * 326.67918 * 17 15 5 19 19 C 1.37781 * 119.90826 * 179.97438 * 18 17 15 20 20 C 1.38544 * 120.30492 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.80943 * 179.97438 * 20 19 18 22 22 C 1.38057 * 120.38755 * 0.02562 * 20 19 18 23 23 C 1.38709 * 120.08425 * 359.97438 * 22 20 19 24 24 O 1.35655 * 120.15228 * 180.27764 * 23 22 20 25 25 H 1.09003 * 109.46779 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47142 * 300.00031 * 1 2 3 27 27 H 1.09000 * 109.46956 * 60.00755 * 1 2 3 28 28 H 1.09000 * 109.47715 * 59.99333 * 3 2 1 29 29 H 1.08999 * 109.47066 * 299.99642 * 3 2 1 30 30 H 1.08999 * 109.46861 * 304.99553 * 4 3 2 31 31 H 1.08994 * 109.46742 * 184.99744 * 4 3 2 32 32 H 1.08999 * 109.47287 * 24.96817 * 6 5 4 33 33 H 1.09003 * 109.46645 * 144.97161 * 6 5 4 34 34 H 0.96999 * 119.99952 * 179.97438 * 10 9 7 35 35 H 1.08003 * 120.04375 * 0.02562 * 18 17 15 36 36 H 1.08000 * 119.84831 * 180.02562 * 19 18 17 37 37 H 1.08996 * 109.47094 * 90.00004 * 21 20 19 38 38 H 1.08994 * 109.47107 * 209.99809 * 21 20 19 39 39 H 1.08997 * 109.46829 * 329.99908 * 21 20 19 40 40 H 1.08001 * 119.95968 * 180.02562 * 22 20 19 41 41 H 0.96704 * 113.99910 * 269.72957 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 3.8395 -0.8821 -1.4410 7 6 5.1328 -1.5610 -1.0702 8 1 5.9721 -0.9738 -0.7280 9 6 5.2441 -2.9319 -1.1667 10 7 4.2218 -3.6470 -1.5829 11 14 6.8474 -3.7734 -0.7077 12 1 7.1676 -3.4867 0.7139 13 1 6.7088 -5.2397 -0.8973 14 1 7.9401 -3.2627 -1.5739 15 6 4.5061 1.3244 -2.2312 16 8 4.7539 0.8333 -3.3156 17 6 4.7860 2.7521 -1.9866 18 6 3.9616 3.4943 -1.1373 19 6 4.2287 4.8272 -0.9127 20 6 5.3117 5.4361 -1.5257 21 6 5.5932 6.8948 -1.2725 22 6 6.1339 4.7147 -2.3680 23 6 5.8799 3.3719 -2.6056 24 8 6.6902 2.6604 -3.4286 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8515 0.5683 0.8410 31 1 3.9785 2.1765 0.0889 32 1 3.0370 -1.2573 -0.8058 33 1 3.6052 -1.0921 -2.4847 34 1 4.3003 -4.6114 -1.6512 35 1 3.1164 3.0237 -0.6570 36 1 3.5910 5.3999 -0.2557 37 1 6.2558 6.9930 -0.4126 38 1 6.0703 7.3304 -2.1503 39 1 4.6572 7.4158 -1.0714 40 1 6.9765 5.1962 -2.8420 41 1 6.4145 2.6687 -4.3555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071229865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:29 Heat of formation + Delta-G solvation = -71.115256 kcal Electronic energy + Delta-G solvation = -24186.449436 eV Core-core repulsion = 20647.065113 eV Total energy + Delta-G solvation = -3539.384323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39081 -38.39167 -37.42975 -36.76531 -34.81779 -33.11776 -32.11894 -30.14499 -29.41946 -28.03178 -26.53001 -25.91001 -23.13610 -22.87890 -22.43086 -21.47656 -19.17209 -17.64884 -17.00151 -16.46996 -16.32501 -16.01132 -15.46195 -15.07577 -14.93419 -14.66099 -14.57037 -14.04755 -13.90093 -13.67119 -13.57732 -12.83214 -12.69455 -12.38879 -12.14809 -11.90067 -11.77097 -11.63149 -11.51422 -11.24126 -11.10424 -10.84243 -10.77696 -10.38858 -10.28848 -10.03698 -9.52956 -9.38345 -8.95871 -8.69904 -8.49243 -8.27117 -7.55191 -5.89915 -3.93031 1.00225 1.26157 3.26212 3.41284 3.44401 3.48901 3.79281 4.03750 4.07268 4.34903 4.56327 4.71796 4.75471 4.93924 5.18120 5.21342 5.29134 5.39365 5.41034 5.43318 5.44589 5.47370 5.55784 5.59277 5.62145 5.67717 5.88525 5.91764 5.93021 6.20193 6.28693 6.36291 6.43482 6.76094 7.34032 7.43744 7.62064 7.71880 7.90373 8.08572 8.39779 8.51968 9.01083 9.17330 9.70039 11.18148 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.005618 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.831991 B = 4983.024213 C = 6458.192484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.041 3.959 4 C 0.079 3.921 5 N -0.581 5.581 6 C 0.248 3.752 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.550 3.450 16 O -0.531 6.531 17 C -0.152 4.152 18 C -0.097 4.097 19 C -0.142 4.142 20 C -0.060 4.060 21 C -0.115 4.115 22 C -0.157 4.157 23 C 0.165 3.835 24 O -0.483 6.483 25 H 0.085 0.915 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.304 20.027 3.305 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.037 4.037 4 C -0.045 4.045 5 N -0.312 5.312 6 C 0.129 3.871 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.337 3.663 16 O -0.409 6.409 17 C -0.156 4.156 18 C -0.116 4.116 19 C -0.160 4.160 20 C -0.060 4.060 21 C -0.171 4.171 22 C -0.176 4.176 23 C 0.118 3.882 24 O -0.294 6.294 25 H 0.104 0.896 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.166 0.834 36 H 0.145 0.855 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.148 0.852 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.814 19.223 3.192 19.856 hybrid contribution 0.428 -0.290 -0.072 0.521 sum -3.386 18.934 3.120 19.486 Atomic orbital electron populations 1.22723 0.82081 1.02755 0.99045 1.88171 1.18727 1.26280 1.95084 1.23078 0.95070 0.85997 0.99517 1.22320 0.91702 1.00766 0.89757 1.48077 1.58938 1.10623 1.13553 1.19418 0.97412 0.71586 0.98645 1.21438 0.98594 0.91874 1.44312 0.92782 1.24884 0.96538 0.97190 0.95360 1.69940 1.30156 1.06254 1.47061 0.86608 0.84088 0.78153 0.78844 1.20354 1.21259 1.20255 1.17919 0.78667 0.84733 0.84987 1.90723 1.52475 1.73710 1.23951 1.20785 0.97246 0.96059 1.01523 1.21938 0.99813 0.93949 0.95857 1.20952 0.98571 0.94596 1.01848 1.19874 0.94483 0.96173 0.95513 1.20821 1.02368 0.91538 1.02393 1.21250 1.01253 0.92964 1.02110 1.18444 0.88295 0.88843 0.92584 1.84711 1.49999 1.72469 1.22240 0.89625 0.94711 0.94556 0.92826 0.93463 0.89574 0.87374 0.92463 0.94512 0.92891 0.83358 0.85498 0.90888 0.91447 0.91333 0.85151 0.74434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.36 -6.52 8.52 -35.23 -0.30 -6.82 16 3 C 0.04 0.61 5.21 37.16 0.19 0.80 16 4 C 0.08 1.36 5.38 -4.04 -0.02 1.33 16 5 N -0.58 -13.17 2.49 -176.29 -0.44 -13.61 16 6 C 0.25 6.86 4.96 -5.19 -0.03 6.83 16 7 C -0.52 -15.71 9.35 -34.44 -0.32 -16.03 16 8 H 0.05 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 10 N -0.89 -27.65 13.29 55.43 0.74 -26.92 16 11 Si 0.90 22.94 29.54 -169.99 -5.02 17.92 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 15 C 0.55 12.46 7.25 -12.47 -0.09 12.37 16 16 O -0.53 -14.00 15.50 -13.02 -0.20 -14.20 16 17 C -0.15 -2.69 5.54 -104.85 -0.58 -3.27 16 18 C -0.10 -1.32 7.43 -39.20 -0.29 -1.61 16 19 C -0.14 -1.55 9.67 -39.64 -0.38 -1.93 16 20 C -0.06 -0.65 5.88 -104.57 -0.62 -1.27 16 21 C -0.11 -0.84 10.00 36.01 0.36 -0.48 16 22 C -0.16 -2.00 9.62 -39.47 -0.38 -2.38 16 23 C 0.16 2.70 6.68 -38.69 -0.26 2.44 16 24 O -0.48 -8.43 12.09 -36.97 -0.45 -8.87 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.66 7.36 -51.93 -0.38 0.28 16 30 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.11 1.57 3.82 -52.32 -0.20 1.37 16 32 H 0.06 1.62 6.10 -51.93 -0.32 1.30 16 33 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.15 1.82 3.30 -52.48 -0.17 1.65 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 39 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.40 5.45 9.06 45.56 0.41 5.86 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -37.23 340.56 -6.76 -43.99 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.81 Total: 3.30 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.40 Total: 0.08 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.30 Total: -40.53 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.95 Total: -29.90 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.23 -6.76 -43.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071229865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.126 kcal (2) G-P(sol) polarization free energy of solvation -37.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds