Wall clock time and date at job start Tue Mar 31 2020 06:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99891 * 2 1 4 4 C 1.53006 * 109.47098 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47095 * 64.99481 * 4 3 2 6 6 C 1.46501 * 119.99975 * 282.83490 * 5 4 3 7 7 C 1.50698 * 109.46979 * 264.96670 * 6 5 4 8 8 H 1.07995 * 120.00287 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99776 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00131 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00230 * 179.97438 * 9 7 6 12 12 H 1.48512 * 109.46864 * 60.00134 * 11 9 7 13 13 H 1.48496 * 109.47261 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47239 * 300.00706 * 11 9 7 15 15 C 1.34773 * 119.99464 * 102.83981 * 5 4 3 16 16 O 1.21598 * 119.99397 * 186.97915 * 15 5 4 17 17 C 1.47531 * 120.00559 * 6.97874 * 15 5 4 18 18 C 1.39710 * 120.19223 * 326.67918 * 17 15 5 19 19 C 1.37781 * 119.90826 * 179.97438 * 18 17 15 20 20 C 1.38544 * 120.30492 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.80943 * 179.97438 * 20 19 18 22 22 C 1.38057 * 120.38755 * 0.02562 * 20 19 18 23 23 C 1.38709 * 120.08425 * 359.97438 * 22 20 19 24 24 O 1.35655 * 120.15228 * 180.27764 * 23 22 20 25 25 H 1.09003 * 109.46779 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47142 * 300.00031 * 1 2 3 27 27 H 1.09000 * 109.46956 * 60.00755 * 1 2 3 28 28 H 1.09000 * 109.47715 * 59.99333 * 3 2 1 29 29 H 1.08999 * 109.47066 * 299.99642 * 3 2 1 30 30 H 1.08999 * 109.46861 * 304.99553 * 4 3 2 31 31 H 1.08994 * 109.46742 * 184.99744 * 4 3 2 32 32 H 1.08999 * 109.47287 * 24.96817 * 6 5 4 33 33 H 1.09003 * 109.46645 * 144.97161 * 6 5 4 34 34 H 0.96999 * 119.99952 * 179.97438 * 10 9 7 35 35 H 1.08003 * 120.04375 * 0.02562 * 18 17 15 36 36 H 1.08000 * 119.84831 * 180.02562 * 19 18 17 37 37 H 1.08996 * 109.47094 * 90.00004 * 21 20 19 38 38 H 1.08994 * 109.47107 * 209.99809 * 21 20 19 39 39 H 1.08997 * 109.46829 * 329.99908 * 21 20 19 40 40 H 1.08001 * 119.95968 * 180.02562 * 22 20 19 41 41 H 0.96704 * 113.99910 * 269.72957 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 3.8395 -0.8821 -1.4410 7 6 5.1328 -1.5610 -1.0702 8 1 5.9721 -0.9738 -0.7280 9 6 5.2441 -2.9319 -1.1667 10 7 4.2218 -3.6470 -1.5829 11 14 6.8474 -3.7734 -0.7077 12 1 7.1676 -3.4867 0.7139 13 1 6.7088 -5.2397 -0.8973 14 1 7.9401 -3.2627 -1.5739 15 6 4.5061 1.3244 -2.2312 16 8 4.7539 0.8333 -3.3156 17 6 4.7860 2.7521 -1.9866 18 6 3.9616 3.4943 -1.1373 19 6 4.2287 4.8272 -0.9127 20 6 5.3117 5.4361 -1.5257 21 6 5.5932 6.8948 -1.2725 22 6 6.1339 4.7147 -2.3680 23 6 5.8799 3.3719 -2.6056 24 8 6.6902 2.6604 -3.4286 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8515 0.5683 0.8410 31 1 3.9785 2.1765 0.0889 32 1 3.0370 -1.2573 -0.8058 33 1 3.6052 -1.0921 -2.4847 34 1 4.3003 -4.6114 -1.6512 35 1 3.1164 3.0237 -0.6570 36 1 3.5910 5.3999 -0.2557 37 1 6.2558 6.9930 -0.4126 38 1 6.0703 7.3304 -2.1503 39 1 4.6572 7.4158 -1.0714 40 1 6.9765 5.1962 -2.8420 41 1 6.4145 2.6687 -4.3555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071229865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:28 Heat of formation + Delta-G solvation = -98.430798 kcal Electronic energy + Delta-G solvation = -24187.633926 eV Core-core repulsion = 20647.065113 eV Total energy + Delta-G solvation = -3540.568813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.71643 -39.77175 -38.80815 -37.94270 -36.50759 -35.01747 -33.55873 -31.44850 -30.68564 -29.52317 -27.93757 -27.15745 -25.03622 -24.10976 -23.62940 -22.72523 -20.71864 -18.84612 -18.69496 -18.33858 -17.71588 -17.29300 -16.79112 -16.67443 -16.23738 -16.16038 -15.97965 -15.45261 -15.20552 -15.04969 -14.42410 -14.32057 -14.14206 -13.66144 -13.39842 -13.21094 -13.07866 -12.95927 -12.90632 -12.74607 -12.59047 -12.43870 -12.24076 -12.15620 -11.89342 -11.72980 -11.59854 -10.65197 -10.63257 -10.50874 -9.78241 -9.63891 -9.37273 -8.20468 -6.34844 -0.12460 0.24883 1.32530 1.38007 1.45295 1.87513 2.25673 2.41832 2.67706 2.90831 3.08875 3.25056 3.55284 3.81067 3.97425 4.08367 4.20263 4.29308 4.32883 4.37852 4.43485 4.52845 4.58720 4.60620 4.71337 4.87432 4.90793 4.93467 4.99407 5.14150 5.24927 5.28291 5.29787 5.37729 5.53375 5.55249 5.84460 5.87518 6.09937 6.33679 6.70814 6.75272 6.77863 7.26566 7.43306 8.86448 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.005618 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.831991 B = 4983.024213 C = 6458.192484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.043 3.957 4 C 0.072 3.928 5 N -0.590 5.590 6 C 0.270 3.730 7 C -0.546 4.546 8 H 0.043 0.957 9 C 0.010 3.990 10 N -0.925 5.925 11 Si 0.966 3.034 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.281 1.281 15 C 0.540 3.460 16 O -0.589 6.589 17 C -0.188 4.188 18 C -0.095 4.095 19 C -0.127 4.127 20 C -0.045 4.045 21 C -0.114 4.114 22 C -0.156 4.156 23 C 0.139 3.861 24 O -0.509 6.509 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.047 0.953 33 H -0.015 1.015 34 H 0.267 0.733 35 H 0.161 0.839 36 H 0.173 0.827 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.150 0.850 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 23.581 5.688 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.034 4.034 4 C -0.050 4.050 5 N -0.319 5.319 6 C 0.149 3.851 7 C -0.585 4.585 8 H 0.061 0.939 9 C -0.189 4.189 10 N -0.565 5.565 11 Si 0.790 3.210 12 H -0.186 1.186 13 H -0.197 1.197 14 H -0.206 1.206 15 C 0.330 3.670 16 O -0.471 6.471 17 C -0.191 4.191 18 C -0.113 4.113 19 C -0.145 4.145 20 C -0.045 4.045 21 C -0.170 4.170 22 C -0.174 4.174 23 C 0.093 3.907 24 O -0.322 6.322 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.122 0.878 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.065 0.935 33 H 0.003 0.997 34 H 0.076 0.924 35 H 0.178 0.822 36 H 0.191 0.809 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.168 0.832 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -3.849 22.820 5.617 23.814 hybrid contribution 0.383 -1.256 -0.820 1.548 sum -3.465 21.564 4.796 22.361 Atomic orbital electron populations 1.22877 0.79963 1.03092 1.00969 1.88091 1.21258 1.28431 1.95507 1.23157 0.92717 0.85386 1.02121 1.22720 0.94156 1.01568 0.86529 1.48035 1.59315 1.08838 1.15722 1.18766 0.96228 0.75130 0.94968 1.21683 0.99107 0.92661 1.45000 0.93904 1.25819 1.00411 0.97791 0.94914 1.70062 1.32280 1.06742 1.47410 0.85510 0.78954 0.77433 0.79138 1.18560 1.19696 1.20631 1.18809 0.77217 0.87018 0.83990 1.90659 1.54733 1.75557 1.26193 1.20496 1.00096 0.93164 1.05388 1.22050 0.99236 0.95080 0.94957 1.21440 0.98563 0.93297 1.01157 1.20419 0.93037 0.97980 0.93069 1.20941 1.04029 0.88602 1.03448 1.21475 1.02220 0.91245 1.02490 1.18827 0.88537 0.90344 0.92992 1.84658 1.50837 1.73476 1.23204 0.90291 0.91428 0.93802 0.87812 0.92816 0.91091 0.84115 0.93469 0.99719 0.92427 0.82152 0.80950 0.89472 0.90434 0.89067 0.83182 0.73593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.92 8.52 -148.98 -1.27 -16.19 16 3 C 0.04 1.21 5.21 71.98 0.37 1.58 16 4 C 0.07 2.49 5.38 86.38 0.46 2.96 16 5 N -0.59 -28.22 2.49 -829.91 -2.07 -30.30 16 6 C 0.27 16.05 4.96 85.63 0.42 16.48 16 7 C -0.55 -34.55 9.35 25.60 0.24 -34.31 16 8 H 0.04 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.01 0.59 5.46 84.65 0.46 1.05 16 10 N -0.93 -59.37 13.29 21.45 0.28 -59.08 16 11 Si 0.97 48.19 29.54 68.60 2.03 50.22 16 12 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 15 C 0.54 26.02 7.25 86.69 0.63 26.65 16 16 O -0.59 -33.88 15.50 13.48 0.21 -33.67 16 17 C -0.19 -6.72 5.54 -20.01 -0.11 -6.83 16 18 C -0.10 -2.36 7.43 22.52 0.17 -2.19 16 19 C -0.13 -2.15 9.67 22.23 0.22 -1.94 16 20 C -0.04 -0.77 5.88 -19.83 -0.12 -0.88 16 21 C -0.11 -1.01 10.00 71.24 0.71 -0.30 16 22 C -0.16 -3.62 9.62 22.34 0.21 -3.40 16 23 C 0.14 4.60 6.68 22.84 0.15 4.75 16 24 O -0.51 -18.88 12.09 -72.20 -0.87 -19.76 16 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.42 7.36 -2.39 -0.02 1.41 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.14 3.87 3.82 -2.76 -0.01 3.86 16 32 H 0.05 2.87 6.10 -2.39 -0.01 2.85 16 33 H -0.02 -1.05 7.49 -2.39 -0.02 -1.07 16 34 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 35 H 0.16 3.48 3.30 -2.91 -0.01 3.47 16 36 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 39 H 0.09 0.48 8.08 -2.39 -0.02 0.46 16 40 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 41 H 0.40 12.34 9.06 -74.05 -0.67 11.67 16 Total: -1.00 -89.30 340.56 3.77 -85.53 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.38 Total: 17.70 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.08 Total: 5.55 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -1.79 Total: -89.38 kcal Atomic # 8 Polarization: -67.69 SS G_CDS: -1.93 Total: -69.62 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -89.30 3.77 -85.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071229865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.898 kcal (2) G-P(sol) polarization free energy of solvation -89.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds