Wall clock time and date at job start Tue Mar 31 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 113.99942 * 2 1 4 4 C 1.53003 * 109.47196 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47297 * 65.00085 * 4 3 2 6 6 C 1.46500 * 120.00191 * 89.99936 * 5 4 3 7 7 C 1.50698 * 109.47220 * 83.64188 * 6 5 4 8 8 H 1.08002 * 119.99538 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00354 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99713 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00114 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47338 * 89.99548 * 11 9 7 13 13 H 1.48500 * 109.46924 * 209.99804 * 11 9 7 14 14 H 1.48502 * 109.47053 * 329.99221 * 11 9 7 15 15 C 1.34774 * 120.00192 * 270.00721 * 5 4 3 16 16 O 1.21588 * 120.00162 * 5.19043 * 15 5 4 17 17 C 1.47532 * 120.00224 * 185.20109 * 15 5 4 18 18 C 1.39710 * 120.19499 * 52.80969 * 17 15 5 19 19 C 1.37784 * 119.90772 * 179.79409 * 18 17 15 20 20 C 1.50704 * 119.84873 * 180.25270 * 19 18 17 21 21 C 1.38546 * 120.30224 * 0.48581 * 19 18 17 22 22 C 1.38052 * 120.39106 * 359.74253 * 21 19 18 23 23 C 1.38712 * 120.08323 * 0.02562 * 22 21 19 24 24 O 1.35653 * 120.15205 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.46980 * 300.00070 * 1 2 3 26 26 H 1.09008 * 109.47234 * 60.00175 * 1 2 3 27 27 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47472 * 60.00019 * 3 2 1 29 29 H 1.09004 * 109.47501 * 299.99891 * 3 2 1 30 30 H 1.09001 * 109.46996 * 304.99733 * 4 3 2 31 31 H 1.08997 * 109.46972 * 185.00200 * 4 3 2 32 32 H 1.08998 * 109.47371 * 203.64289 * 6 5 4 33 33 H 1.09002 * 109.47036 * 323.64630 * 6 5 4 34 34 H 0.96999 * 119.99889 * 179.97438 * 10 9 7 35 35 H 1.08001 * 120.04577 * 359.97438 * 18 17 15 36 36 H 1.09006 * 109.46907 * 270.23455 * 20 19 18 37 37 H 1.09005 * 109.46915 * 30.22905 * 20 19 18 38 38 H 1.08998 * 109.47484 * 150.23211 * 20 19 18 39 39 H 1.08006 * 119.80358 * 179.72594 * 21 19 18 40 40 H 1.07993 * 119.95934 * 180.02562 * 22 21 19 41 41 H 0.96698 * 113.99678 * 270.02646 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2864 1.4007 -2.4147 7 6 5.7006 1.9094 -2.3039 8 1 6.3071 1.6373 -1.4527 9 6 6.2198 2.7229 -3.2886 10 7 5.4810 3.0546 -4.3248 11 14 7.9730 3.3528 -3.1515 12 1 8.8970 2.3914 -3.8051 13 1 8.0781 4.6739 -3.8215 14 1 8.3377 3.4940 -1.7189 15 6 4.0948 -0.7754 -1.3356 16 8 3.7475 -1.4755 -0.4041 17 6 4.6468 -1.3929 -2.5565 18 6 5.8782 -0.9697 -3.0629 19 6 6.3901 -1.5533 -4.2012 20 6 7.7213 -1.0998 -4.7430 21 6 5.6845 -2.5519 -4.8527 22 6 4.4644 -2.9763 -4.3659 23 6 3.9361 -2.4032 -3.2185 24 8 2.7371 -2.8188 -2.7392 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5682 0.8410 31 1 3.9785 2.1765 0.0890 32 1 4.1829 0.8105 -3.3252 33 1 3.5982 2.2453 -2.4490 34 1 5.8462 3.6272 -5.0173 35 1 6.4295 -0.1882 -2.5611 36 1 7.5675 -0.2813 -5.4463 37 1 8.3510 -0.7590 -3.9211 38 1 8.2081 -1.9308 -5.2534 39 1 6.0913 -3.0008 -5.7469 40 1 3.9205 -3.7555 -4.8790 41 1 1.9814 -2.3300 -3.0929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071229917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:57 Heat of formation + Delta-G solvation = -97.722237 kcal Electronic energy + Delta-G solvation = -24752.157956 eV Core-core repulsion = 21211.619868 eV Total energy + Delta-G solvation = -3540.538088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86433 -38.25610 -37.10417 -36.48947 -34.82800 -32.67838 -31.43031 -30.99378 -29.25515 -27.09491 -26.01130 -25.80346 -23.60456 -23.05000 -22.00077 -20.95142 -18.60815 -17.66779 -16.72561 -16.33998 -16.12874 -15.60552 -15.40798 -15.26849 -14.86599 -14.50279 -14.40253 -13.80377 -13.44437 -13.23577 -13.01965 -12.76195 -12.33678 -12.19818 -12.15149 -11.62237 -11.60295 -11.41739 -11.29971 -11.22856 -10.99837 -10.94610 -10.74321 -10.66553 -10.27124 -10.04219 -9.76013 -9.29334 -8.89662 -8.63175 -8.28678 -7.91976 -7.63610 -6.22563 -4.29439 1.54299 1.83538 3.16694 3.25469 3.28084 3.56817 3.93443 4.16141 4.23626 4.32922 4.69320 5.08930 5.24852 5.34628 5.40866 5.43802 5.50078 5.66194 5.68655 5.69825 5.76450 5.84436 5.87728 6.05730 6.10129 6.14398 6.18273 6.41229 6.48206 6.56085 6.70641 6.80188 6.91102 7.09579 7.19314 7.36000 7.51081 7.64446 7.72038 8.02056 8.09814 8.41798 8.76077 9.16078 9.37348 10.83355 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.007858 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.358604 B = 3562.595711 C = 5378.669100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.045 3.955 4 C 0.125 3.875 5 N -0.593 5.593 6 C 0.237 3.763 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.070 3.930 10 N -0.884 5.884 11 Si 0.887 3.113 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.562 3.438 16 O -0.535 6.535 17 C -0.138 4.138 18 C -0.043 4.043 19 C -0.104 4.104 20 C -0.107 4.107 21 C -0.095 4.095 22 C -0.162 4.162 23 C 0.134 3.866 24 O -0.486 6.486 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.158 0.842 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 -4.594 -0.060 5.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.033 4.033 4 C 0.001 3.999 5 N -0.325 5.325 6 C 0.117 3.883 7 C -0.576 4.576 8 H 0.081 0.919 9 C -0.133 4.133 10 N -0.522 5.522 11 Si 0.714 3.286 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.197 1.197 15 C 0.350 3.650 16 O -0.412 6.412 17 C -0.141 4.141 18 C -0.062 4.062 19 C -0.105 4.105 20 C -0.164 4.164 21 C -0.113 4.113 22 C -0.181 4.181 23 C 0.089 3.911 24 O -0.296 6.296 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.175 0.825 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.296 -5.397 0.579 6.350 hybrid contribution 0.309 1.242 -0.497 1.373 sum -2.987 -4.155 0.082 5.118 Atomic orbital electron populations 1.22668 0.82728 1.02083 0.99060 1.88175 1.17998 1.27008 1.95119 1.23049 0.95528 0.85153 0.99612 1.21288 0.91067 0.99382 0.88161 1.48033 1.64957 1.05684 1.13781 1.19430 0.96015 0.90000 0.82816 1.21456 0.98155 1.30709 1.07322 0.91937 1.24899 0.97755 0.95661 0.95030 1.69923 1.36521 1.35726 1.10010 0.86657 0.84786 0.78580 0.78530 1.20135 1.21080 1.19725 1.18003 0.78088 0.82229 0.86725 1.90730 1.49193 1.62019 1.39293 1.20321 0.97833 0.97973 0.98023 1.21764 0.94112 0.96002 0.94284 1.19820 0.97515 0.96966 0.96151 1.20713 0.93391 1.00953 1.01346 1.20909 0.94337 0.96921 0.99174 1.21141 0.97924 1.02515 0.96482 1.18393 0.87494 0.93073 0.92151 1.84788 1.13904 1.60966 1.69903 0.94881 0.94775 0.90173 0.93402 0.93327 0.90367 0.88763 0.94177 0.95158 0.92517 0.82518 0.90991 0.91602 0.92317 0.86195 0.85797 0.76130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.70 9.27 -48.35 -0.45 -7.15 16 3 C 0.04 0.74 6.28 37.16 0.23 0.98 16 4 C 0.12 2.34 5.86 -4.04 -0.02 2.32 16 5 N -0.59 -12.76 2.44 -176.30 -0.43 -13.19 16 6 C 0.24 5.53 4.67 -5.19 -0.02 5.50 16 7 C -0.54 -13.12 6.71 -34.44 -0.23 -13.35 16 8 H 0.06 1.54 7.66 -52.49 -0.40 1.14 16 9 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.88 -23.23 13.29 55.43 0.74 -22.49 16 11 Si 0.89 19.39 29.54 -169.99 -5.02 14.37 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 13 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 C 0.56 12.73 6.52 -12.47 -0.08 12.65 16 16 O -0.53 -13.31 15.28 -14.63 -0.22 -13.54 16 17 C -0.14 -2.92 4.53 -104.84 -0.48 -3.40 16 18 C -0.04 -0.89 7.50 -39.20 -0.29 -1.18 16 19 C -0.10 -1.86 5.87 -104.67 -0.61 -2.47 16 20 C -0.11 -1.66 10.00 36.01 0.36 -1.30 16 21 C -0.10 -1.51 9.68 -39.54 -0.38 -1.89 16 22 C -0.16 -2.66 9.98 -39.47 -0.39 -3.05 16 23 C 0.13 2.57 6.70 -38.69 -0.26 2.31 16 24 O -0.49 -8.90 12.67 -23.18 -0.29 -9.19 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.51 7.50 -51.93 -0.39 1.12 16 31 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 32 H 0.04 1.00 6.25 -51.93 -0.32 0.68 16 33 H 0.03 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.16 3.44 5.43 -52.49 -0.28 3.16 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 38 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 40 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.38 5.42 9.06 45.56 0.41 5.83 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -30.74 346.11 -6.82 -37.56 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.19 Total: 8.11 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.17 Total: 0.31 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.31 Total: -35.68 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.97 Total: -29.88 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.74 -6.82 -37.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071229917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.163 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds