Wall clock time and date at job start Tue Mar 31 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 113.99942 * 2 1 4 4 C 1.53003 * 109.47196 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47297 * 65.00085 * 4 3 2 6 6 C 1.46500 * 120.00191 * 89.99936 * 5 4 3 7 7 C 1.50698 * 109.47220 * 83.64188 * 6 5 4 8 8 H 1.08002 * 119.99538 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00354 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99713 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00114 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47338 * 89.99548 * 11 9 7 13 13 H 1.48500 * 109.46924 * 209.99804 * 11 9 7 14 14 H 1.48502 * 109.47053 * 329.99221 * 11 9 7 15 15 C 1.34774 * 120.00192 * 270.00721 * 5 4 3 16 16 O 1.21588 * 120.00162 * 5.19043 * 15 5 4 17 17 C 1.47532 * 120.00224 * 185.20109 * 15 5 4 18 18 C 1.39710 * 120.19499 * 52.80969 * 17 15 5 19 19 C 1.37784 * 119.90772 * 179.79409 * 18 17 15 20 20 C 1.50704 * 119.84873 * 180.25270 * 19 18 17 21 21 C 1.38546 * 120.30224 * 0.48581 * 19 18 17 22 22 C 1.38052 * 120.39106 * 359.74253 * 21 19 18 23 23 C 1.38712 * 120.08323 * 0.02562 * 22 21 19 24 24 O 1.35653 * 120.15205 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.46980 * 300.00070 * 1 2 3 26 26 H 1.09008 * 109.47234 * 60.00175 * 1 2 3 27 27 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47472 * 60.00019 * 3 2 1 29 29 H 1.09004 * 109.47501 * 299.99891 * 3 2 1 30 30 H 1.09001 * 109.46996 * 304.99733 * 4 3 2 31 31 H 1.08997 * 109.46972 * 185.00200 * 4 3 2 32 32 H 1.08998 * 109.47371 * 203.64289 * 6 5 4 33 33 H 1.09002 * 109.47036 * 323.64630 * 6 5 4 34 34 H 0.96999 * 119.99889 * 179.97438 * 10 9 7 35 35 H 1.08001 * 120.04577 * 359.97438 * 18 17 15 36 36 H 1.09006 * 109.46907 * 270.23455 * 20 19 18 37 37 H 1.09005 * 109.46915 * 30.22905 * 20 19 18 38 38 H 1.08998 * 109.47484 * 150.23211 * 20 19 18 39 39 H 1.08006 * 119.80358 * 179.72594 * 21 19 18 40 40 H 1.07993 * 119.95934 * 180.02562 * 22 21 19 41 41 H 0.96698 * 113.99678 * 270.02646 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2864 1.4007 -2.4147 7 6 5.7006 1.9094 -2.3039 8 1 6.3071 1.6373 -1.4527 9 6 6.2198 2.7229 -3.2886 10 7 5.4810 3.0546 -4.3248 11 14 7.9730 3.3528 -3.1515 12 1 8.8970 2.3914 -3.8051 13 1 8.0781 4.6739 -3.8215 14 1 8.3377 3.4940 -1.7189 15 6 4.0948 -0.7754 -1.3356 16 8 3.7475 -1.4755 -0.4041 17 6 4.6468 -1.3929 -2.5565 18 6 5.8782 -0.9697 -3.0629 19 6 6.3901 -1.5533 -4.2012 20 6 7.7213 -1.0998 -4.7430 21 6 5.6845 -2.5519 -4.8527 22 6 4.4644 -2.9763 -4.3659 23 6 3.9361 -2.4032 -3.2185 24 8 2.7371 -2.8188 -2.7392 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5682 0.8410 31 1 3.9785 2.1765 0.0890 32 1 4.1829 0.8105 -3.3252 33 1 3.5982 2.2453 -2.4490 34 1 5.8462 3.6272 -5.0173 35 1 6.4295 -0.1882 -2.5611 36 1 7.5675 -0.2813 -5.4463 37 1 8.3510 -0.7590 -3.9211 38 1 8.2081 -1.9308 -5.2534 39 1 6.0913 -3.0008 -5.7469 40 1 3.9205 -3.7555 -4.8790 41 1 1.9814 -2.3300 -3.0929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071229917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:57 Heat of formation + Delta-G solvation = -117.277883 kcal Electronic energy + Delta-G solvation = -24753.005952 eV Core-core repulsion = 21211.619868 eV Total energy + Delta-G solvation = -3541.386084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41307 -39.76182 -38.50815 -37.89432 -36.59787 -34.55077 -32.84866 -32.38421 -30.74965 -28.92527 -27.23700 -27.11072 -25.11280 -24.88270 -23.42442 -22.38023 -20.19540 -19.14607 -18.57927 -17.96293 -17.61620 -17.06322 -16.88279 -16.62430 -16.40481 -16.16317 -15.78308 -15.25059 -14.91808 -14.70502 -14.36354 -14.33694 -14.13069 -13.58437 -13.46280 -13.30390 -13.04845 -12.95737 -12.74452 -12.69439 -12.57782 -12.41528 -12.30468 -12.07831 -11.93605 -11.69307 -11.50780 -10.68321 -10.56121 -10.48723 -9.76115 -9.42268 -9.29539 -8.15745 -6.28467 0.10916 0.43542 1.42890 1.46418 1.54000 1.91191 2.30010 2.46414 2.76518 2.98556 3.14651 3.33210 3.76048 4.04025 4.07910 4.16145 4.22911 4.39327 4.45866 4.50285 4.53392 4.54796 4.63911 4.74627 4.82681 4.86416 4.89493 4.90172 4.96679 5.14739 5.23225 5.25098 5.35635 5.46622 5.69686 5.71505 5.88334 5.98133 6.08724 6.35886 6.60691 6.79904 6.84606 7.35613 7.48098 8.89820 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.007858 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.358604 B = 3562.595711 C = 5378.669100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.051 3.949 4 C 0.117 3.883 5 N -0.593 5.593 6 C 0.258 3.742 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.034 3.966 10 N -0.913 5.913 11 Si 0.942 3.058 12 H -0.265 1.265 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.560 3.440 16 O -0.566 6.566 17 C -0.171 4.171 18 C -0.063 4.063 19 C -0.113 4.113 20 C -0.105 4.105 21 C -0.082 4.082 22 C -0.153 4.153 23 C 0.122 3.878 24 O -0.498 6.498 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.022 0.978 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.133 0.867 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 -5.321 -1.235 6.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.026 4.026 4 C -0.006 4.006 5 N -0.323 5.323 6 C 0.138 3.862 7 C -0.575 4.575 8 H 0.072 0.928 9 C -0.167 4.167 10 N -0.552 5.552 11 Si 0.767 3.233 12 H -0.190 1.190 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.348 3.652 16 O -0.446 6.446 17 C -0.175 4.175 18 C -0.082 4.082 19 C -0.114 4.114 20 C -0.162 4.162 21 C -0.100 4.100 22 C -0.172 4.172 23 C 0.077 3.923 24 O -0.309 6.309 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.150 0.850 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.181 0.819 40 H 0.176 0.824 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -2.928 -6.107 -0.589 6.798 hybrid contribution 0.132 1.422 -0.131 1.434 sum -2.795 -4.685 -0.720 5.503 Atomic orbital electron populations 1.22851 0.80446 1.03078 1.00496 1.88123 1.20624 1.27845 1.95415 1.22965 0.93676 0.85052 1.00935 1.21491 0.93130 0.99312 0.86651 1.48048 1.64667 1.05510 1.14105 1.19037 0.95255 0.89080 0.82851 1.21494 0.98455 1.30526 1.07030 0.92764 1.25484 1.00900 0.95720 0.94603 1.70012 1.38047 1.36461 1.10683 0.85797 0.81014 0.78098 0.78378 1.19006 1.21014 1.19756 1.18326 0.77531 0.82264 0.87036 1.90687 1.50903 1.62518 1.40516 1.20405 0.98870 0.99760 0.98426 1.21608 0.94239 0.96555 0.95789 1.20148 0.98633 0.97262 0.95307 1.20745 0.92344 1.02015 1.01060 1.21372 0.93496 0.95396 0.99721 1.21514 0.98092 1.02368 0.95187 1.18647 0.87778 0.92912 0.92994 1.84734 1.14365 1.61229 1.70596 0.92728 0.93936 0.89500 0.90146 0.93695 0.91296 0.87889 0.96021 0.96625 0.92416 0.84971 0.91800 0.92357 0.88705 0.81886 0.82383 0.74411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -14.72 9.27 -136.43 -1.27 -15.99 16 3 C 0.05 1.70 6.28 71.98 0.45 2.15 16 4 C 0.12 4.50 5.86 86.38 0.51 5.00 16 5 N -0.59 -26.42 2.44 -829.95 -2.03 -28.44 16 6 C 0.26 12.45 4.67 85.63 0.40 12.85 16 7 C -0.54 -26.79 6.71 25.60 0.17 -26.61 16 8 H 0.05 2.76 7.66 -2.91 -0.02 2.74 16 9 C 0.03 1.71 5.46 84.66 0.46 2.18 16 10 N -0.91 -48.37 13.29 21.45 0.28 -48.09 16 11 Si 0.94 39.68 29.54 68.60 2.03 41.71 16 12 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 13 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 15 C 0.56 26.27 6.52 86.69 0.57 26.84 16 16 O -0.57 -29.16 15.28 15.05 0.23 -28.93 16 17 C -0.17 -7.41 4.53 -20.01 -0.09 -7.50 16 18 C -0.06 -2.64 7.50 22.52 0.17 -2.48 16 19 C -0.11 -3.89 5.87 -19.90 -0.12 -4.00 16 20 C -0.11 -3.05 10.00 71.24 0.71 -2.34 16 21 C -0.08 -2.33 9.68 22.30 0.22 -2.12 16 22 C -0.15 -4.62 9.98 22.34 0.22 -4.39 16 23 C 0.12 4.61 6.70 22.85 0.15 4.77 16 24 O -0.50 -18.07 12.67 -85.37 -1.08 -19.15 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.02 8.14 -2.38 -0.02 1.01 16 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.07 2.76 7.50 -2.39 -0.02 2.74 16 31 H 0.10 3.67 8.07 -2.39 -0.02 3.65 16 32 H 0.02 1.13 6.25 -2.39 -0.01 1.11 16 33 H 0.02 0.79 8.12 -2.39 -0.02 0.78 16 34 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 35 H 0.13 6.06 5.43 -2.91 -0.02 6.04 16 36 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.06 1.75 8.08 -2.38 -0.02 1.73 16 38 H 0.09 2.03 8.08 -2.39 -0.02 2.01 16 39 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 41 H 0.40 11.20 9.06 -74.06 -0.67 10.53 16 Total: -1.00 -67.42 346.11 3.61 -63.81 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.37 Total: 28.76 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 5.07 Total: 6.31 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -1.74 Total: -76.53 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: -2.12 Total: -64.06 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -67.42 3.61 -63.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071229917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.464 kcal (2) G-P(sol) polarization free energy of solvation -67.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds