Wall clock time and date at job start Tue Mar 31 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00060 * 2 1 4 4 C 1.53002 * 109.47388 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47046 * 64.99953 * 4 3 2 6 6 C 1.46504 * 119.99994 * 270.00525 * 5 4 3 7 7 C 1.50706 * 109.46808 * 275.75707 * 6 5 4 8 8 H 1.07998 * 119.99955 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99681 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00167 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99517 * 179.97438 * 9 7 6 12 12 H 1.48510 * 109.47021 * 60.00456 * 11 9 7 13 13 H 1.48505 * 109.47115 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47519 * 300.00409 * 11 9 7 15 15 C 1.34769 * 120.00240 * 89.99786 * 5 4 3 16 16 O 1.21552 * 119.99939 * 4.99274 * 15 5 4 17 17 C 1.47856 * 120.00515 * 184.98374 * 15 5 4 18 18 C 1.39606 * 120.11491 * 311.74608 * 17 15 5 19 19 C 1.37964 * 119.96456 * 180.22957 * 18 17 15 20 20 C 1.38293 * 120.20725 * 359.51061 * 19 18 17 21 21 C 1.50696 * 119.88157 * 180.23145 * 20 19 18 22 22 C 1.38816 * 120.23426 * 0.46780 * 20 19 18 23 23 O 1.35907 * 119.97969 * 179.76696 * 22 20 19 24 24 C 1.38490 * 120.03173 * 359.79229 * 22 20 19 25 25 H 1.09000 * 109.47542 * 59.99928 * 1 2 3 26 26 H 1.08997 * 109.47548 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47168 * 300.00325 * 1 2 3 28 28 H 1.08999 * 109.47145 * 59.99565 * 3 2 1 29 29 H 1.08997 * 109.46983 * 300.00089 * 3 2 1 30 30 H 1.09001 * 109.46574 * 305.00172 * 4 3 2 31 31 H 1.08999 * 109.47321 * 184.99964 * 4 3 2 32 32 H 1.09005 * 109.47271 * 35.75392 * 6 5 4 33 33 H 1.08998 * 109.47202 * 155.75748 * 6 5 4 34 34 H 0.97002 * 120.00053 * 179.97438 * 10 9 7 35 35 H 1.08002 * 120.02063 * 359.94858 * 18 17 15 36 36 H 1.07999 * 119.89638 * 179.74533 * 19 18 17 37 37 H 1.08992 * 109.47223 * 270.23077 * 21 20 19 38 38 H 1.09000 * 109.47293 * 30.23604 * 21 20 19 39 39 H 1.09001 * 109.46674 * 150.23266 * 21 20 19 40 40 H 0.96708 * 114.00171 * 270.01884 * 23 22 20 41 41 H 1.08003 * 120.10082 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1051 -0.8921 -1.3428 7 6 5.4519 -1.3104 -0.8115 8 1 6.1425 -0.5658 -0.4440 9 6 5.8025 -2.6438 -0.7946 10 7 4.9618 -3.5504 -1.2427 11 14 7.4721 -3.1622 -0.1367 12 1 7.5981 -2.7402 1.2816 13 1 7.6034 -4.6387 -0.2279 14 1 8.5424 -2.5200 -0.9412 15 6 4.2614 1.3337 -2.3218 16 8 4.2419 2.5449 -2.2217 17 6 4.5988 0.7044 -3.6165 18 6 5.5390 -0.3261 -3.6705 19 6 5.8550 -0.9079 -4.8810 20 6 5.2357 -0.4804 -6.0412 21 6 5.5826 -1.1246 -7.3586 22 6 4.2992 0.5433 -5.9972 23 8 3.6971 0.9626 -7.1412 24 6 3.9785 1.1379 -4.7882 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1766 0.0889 32 1 3.3193 -1.3639 -0.7529 33 1 4.0132 -1.2013 -2.3840 34 1 5.2086 -4.4885 -1.2312 35 1 6.0222 -0.6647 -2.7659 36 1 6.5856 -1.7022 -4.9220 37 1 6.4142 -0.5895 -7.8169 38 1 5.8669 -2.1635 -7.1914 39 1 4.7173 -1.0867 -8.0205 40 1 4.1661 1.6773 -7.5935 41 1 3.2497 1.9342 -4.7527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071229966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:30 Heat of formation + Delta-G solvation = -99.024463 kcal Electronic energy + Delta-G solvation = -24223.392841 eV Core-core repulsion = 20682.798284 eV Total energy + Delta-G solvation = -3540.594557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94345 -38.72025 -37.37347 -36.12423 -34.94915 -32.74264 -32.38589 -30.01453 -29.32691 -27.23591 -26.85409 -25.78503 -23.05653 -22.88120 -22.10607 -21.23567 -19.17214 -17.61145 -16.56025 -16.42011 -16.09783 -15.75576 -15.44270 -15.26505 -14.88021 -14.65113 -14.42208 -14.19978 -13.71409 -13.40212 -13.07662 -12.85170 -12.38105 -12.18713 -11.99951 -11.77809 -11.75931 -11.54925 -11.52948 -11.29717 -11.00709 -10.86614 -10.76248 -10.52465 -10.27719 -10.12332 -9.75326 -9.38900 -9.09327 -8.57517 -8.40647 -7.99253 -7.70978 -6.17817 -4.25642 1.44797 1.76013 3.22478 3.28494 3.29101 3.34842 3.83704 4.11902 4.20342 4.33211 4.55741 5.10054 5.12325 5.22041 5.37781 5.40121 5.51927 5.58081 5.66302 5.67303 5.71268 5.73474 5.87136 5.87965 5.99688 6.08338 6.10393 6.31262 6.37928 6.40486 6.72109 6.84065 6.98396 7.00463 7.28130 7.37369 7.49902 7.58833 7.78622 7.89476 8.07657 8.34756 8.77357 8.96414 9.39667 10.87632 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009647 B = 0.007384 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.906997 B = 3791.192522 C = 5722.075296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.579 5.579 6 C 0.231 3.769 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.070 3.930 10 N -0.879 5.879 11 Si 0.892 3.108 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.557 3.443 16 O -0.574 6.574 17 C -0.111 4.111 18 C -0.069 4.069 19 C -0.116 4.116 20 C -0.099 4.099 21 C -0.110 4.110 22 C 0.077 3.923 23 O -0.496 6.496 24 C -0.098 4.098 25 H 0.035 0.965 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.266 0.734 35 H 0.172 0.828 36 H 0.127 0.873 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.381 0.619 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.609 5.698 -5.518 8.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.308 5.308 6 C 0.111 3.889 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.134 4.134 10 N -0.516 5.516 11 Si 0.719 3.281 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.346 3.654 16 O -0.456 6.456 17 C -0.114 4.114 18 C -0.086 4.086 19 C -0.134 4.134 20 C -0.099 4.099 21 C -0.167 4.167 22 C 0.032 3.968 23 O -0.305 6.305 24 C -0.117 4.117 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.189 0.811 36 H 0.145 0.855 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.235 0.765 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.971 5.467 -5.323 8.188 hybrid contribution 0.870 0.075 0.293 0.921 sum -2.101 5.542 -5.030 7.774 Atomic orbital electron populations 1.22681 0.82188 1.02418 0.99137 1.88069 1.18646 1.27346 1.95185 1.23026 0.95246 0.84999 0.99720 1.21359 0.91062 0.99737 0.88131 1.48092 1.62786 1.10144 1.09737 1.19715 0.97446 0.72562 0.99146 1.21440 1.01193 0.92481 1.43133 0.92032 1.24932 0.97277 0.96333 0.94905 1.69934 1.35345 1.01528 1.44817 0.86659 0.84075 0.77562 0.79830 1.20070 1.21103 1.19976 1.18333 0.76744 0.86135 0.84201 1.90665 1.55500 1.14135 1.85348 1.19727 1.00033 0.98582 0.93064 1.22479 0.94732 0.91118 1.00307 1.20939 1.00508 1.00596 0.91381 1.20315 0.95874 0.97298 0.96460 1.20681 1.01682 1.00257 0.94077 1.17953 0.96113 0.97119 0.85570 1.84818 1.51973 1.57023 1.36695 1.21248 0.99850 0.99453 0.91149 0.94664 0.89853 0.94726 0.93106 0.93542 0.89137 0.89297 0.93255 0.93734 0.92397 0.81074 0.85510 0.91636 0.91446 0.91169 0.76481 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.87 9.45 -35.23 -0.33 -7.20 16 3 C 0.05 0.80 6.28 37.16 0.23 1.04 16 4 C 0.12 2.27 5.87 -4.04 -0.02 2.25 16 5 N -0.58 -12.61 2.42 -176.16 -0.43 -13.04 16 6 C 0.23 5.59 4.52 -5.19 -0.02 5.57 16 7 C -0.54 -13.74 6.84 -34.44 -0.24 -13.98 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.88 -23.75 13.29 55.43 0.74 -23.01 16 11 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 15 C 0.56 12.30 7.24 -12.33 -0.09 12.21 16 16 O -0.57 -13.35 16.57 5.32 0.09 -13.26 16 17 C -0.11 -2.29 4.95 -104.99 -0.52 -2.81 16 18 C -0.07 -1.40 7.51 -39.17 -0.29 -1.70 16 19 C -0.12 -2.07 9.68 -39.66 -0.38 -2.46 16 20 C -0.10 -1.59 5.90 -104.39 -0.62 -2.21 16 21 C -0.11 -1.38 9.78 36.00 0.35 -1.03 16 22 C 0.08 1.27 6.67 -39.28 -0.26 1.01 16 23 O -0.50 -6.89 12.53 -19.45 -0.24 -7.14 16 24 C -0.10 -1.81 9.66 -39.02 -0.38 -2.18 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.71 8.07 -51.93 -0.42 1.29 16 31 H 0.09 1.59 7.36 -51.93 -0.38 1.21 16 32 H 0.05 1.30 7.03 -51.93 -0.37 0.94 16 33 H 0.04 1.14 5.40 -51.93 -0.28 0.86 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.17 3.87 4.74 -52.49 -0.25 3.62 16 36 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.07 0.85 7.52 -51.93 -0.39 0.46 16 40 H 0.38 3.39 9.06 45.56 0.41 3.80 16 41 H 0.13 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -30.42 344.84 -6.25 -36.66 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.02 Total: 7.92 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.22 Total: -1.04 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.31 Total: -36.05 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.49 Total: -27.60 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.42 -6.25 -36.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071229966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.360 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds