Wall clock time and date at job start Tue Mar 31 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00060 * 2 1 4 4 C 1.53002 * 109.47388 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47046 * 64.99953 * 4 3 2 6 6 C 1.46504 * 119.99994 * 270.00525 * 5 4 3 7 7 C 1.50706 * 109.46808 * 275.75707 * 6 5 4 8 8 H 1.07998 * 119.99955 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99681 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00167 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99517 * 179.97438 * 9 7 6 12 12 H 1.48510 * 109.47021 * 60.00456 * 11 9 7 13 13 H 1.48505 * 109.47115 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47519 * 300.00409 * 11 9 7 15 15 C 1.34769 * 120.00240 * 89.99786 * 5 4 3 16 16 O 1.21552 * 119.99939 * 4.99274 * 15 5 4 17 17 C 1.47856 * 120.00515 * 184.98374 * 15 5 4 18 18 C 1.39606 * 120.11491 * 311.74608 * 17 15 5 19 19 C 1.37964 * 119.96456 * 180.22957 * 18 17 15 20 20 C 1.38293 * 120.20725 * 359.51061 * 19 18 17 21 21 C 1.50696 * 119.88157 * 180.23145 * 20 19 18 22 22 C 1.38816 * 120.23426 * 0.46780 * 20 19 18 23 23 O 1.35907 * 119.97969 * 179.76696 * 22 20 19 24 24 C 1.38490 * 120.03173 * 359.79229 * 22 20 19 25 25 H 1.09000 * 109.47542 * 59.99928 * 1 2 3 26 26 H 1.08997 * 109.47548 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47168 * 300.00325 * 1 2 3 28 28 H 1.08999 * 109.47145 * 59.99565 * 3 2 1 29 29 H 1.08997 * 109.46983 * 300.00089 * 3 2 1 30 30 H 1.09001 * 109.46574 * 305.00172 * 4 3 2 31 31 H 1.08999 * 109.47321 * 184.99964 * 4 3 2 32 32 H 1.09005 * 109.47271 * 35.75392 * 6 5 4 33 33 H 1.08998 * 109.47202 * 155.75748 * 6 5 4 34 34 H 0.97002 * 120.00053 * 179.97438 * 10 9 7 35 35 H 1.08002 * 120.02063 * 359.94858 * 18 17 15 36 36 H 1.07999 * 119.89638 * 179.74533 * 19 18 17 37 37 H 1.08992 * 109.47223 * 270.23077 * 21 20 19 38 38 H 1.09000 * 109.47293 * 30.23604 * 21 20 19 39 39 H 1.09001 * 109.46674 * 150.23266 * 21 20 19 40 40 H 0.96708 * 114.00171 * 270.01884 * 23 22 20 41 41 H 1.08003 * 120.10082 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.1051 -0.8921 -1.3428 7 6 5.4519 -1.3104 -0.8115 8 1 6.1425 -0.5658 -0.4440 9 6 5.8025 -2.6438 -0.7946 10 7 4.9618 -3.5504 -1.2427 11 14 7.4721 -3.1622 -0.1367 12 1 7.5981 -2.7402 1.2816 13 1 7.6034 -4.6387 -0.2279 14 1 8.5424 -2.5200 -0.9412 15 6 4.2614 1.3337 -2.3218 16 8 4.2419 2.5449 -2.2217 17 6 4.5988 0.7044 -3.6165 18 6 5.5390 -0.3261 -3.6705 19 6 5.8550 -0.9079 -4.8810 20 6 5.2357 -0.4804 -6.0412 21 6 5.5826 -1.1246 -7.3586 22 6 4.2992 0.5433 -5.9972 23 8 3.6971 0.9626 -7.1412 24 6 3.9785 1.1379 -4.7882 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1766 0.0889 32 1 3.3193 -1.3639 -0.7529 33 1 4.0132 -1.2013 -2.3840 34 1 5.2086 -4.4885 -1.2312 35 1 6.0222 -0.6647 -2.7659 36 1 6.5856 -1.7022 -4.9220 37 1 6.4142 -0.5895 -7.8169 38 1 5.8669 -2.1635 -7.1914 39 1 4.7173 -1.0867 -8.0205 40 1 4.1661 1.6773 -7.5935 41 1 3.2497 1.9342 -4.7527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071229966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:30 Heat of formation + Delta-G solvation = -119.291986 kcal Electronic energy + Delta-G solvation = -24224.271706 eV Core-core repulsion = 20682.798284 eV Total energy + Delta-G solvation = -3541.473422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47387 -40.17095 -38.73812 -37.45436 -36.68559 -34.60984 -33.75538 -31.51400 -30.71606 -29.06078 -28.13966 -27.04724 -24.88032 -24.38535 -23.51168 -22.64470 -20.66454 -19.12376 -18.49162 -17.86607 -17.64833 -17.15007 -16.77444 -16.73807 -16.49394 -16.18512 -15.81423 -15.66740 -15.23929 -14.79618 -14.39529 -14.19649 -14.15124 -13.66479 -13.34945 -13.19680 -13.09725 -13.07758 -12.85801 -12.74627 -12.70799 -12.50754 -12.24035 -12.09210 -11.86473 -11.69281 -11.60755 -10.86052 -10.62961 -10.50873 -9.82622 -9.50381 -9.37668 -8.15907 -6.30230 0.00946 0.35838 1.44610 1.45637 1.53061 1.70010 2.21748 2.43991 2.72574 2.92155 3.12509 3.28785 3.67853 3.88495 4.04062 4.11161 4.20445 4.31994 4.36010 4.45847 4.50105 4.53283 4.58452 4.76348 4.81889 4.84571 4.86423 4.88314 4.99055 5.01338 5.22641 5.35376 5.36600 5.51932 5.58618 5.67396 5.83558 5.90417 6.09628 6.26149 6.54041 6.81248 6.86493 7.19958 7.39543 8.89322 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009647 B = 0.007384 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.906997 B = 3791.192522 C = 5722.075296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.055 3.945 4 C 0.113 3.887 5 N -0.583 5.583 6 C 0.254 3.746 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.030 3.970 10 N -0.910 5.910 11 Si 0.951 3.049 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.553 3.447 16 O -0.592 6.592 17 C -0.136 4.136 18 C -0.089 4.089 19 C -0.121 4.121 20 C -0.092 4.092 21 C -0.107 4.107 22 C 0.090 3.910 23 O -0.495 6.495 24 C -0.107 4.107 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.023 0.977 33 H 0.029 0.971 34 H 0.268 0.732 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.407 0.593 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.278 5.843 -6.815 9.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.022 4.022 4 C -0.009 4.009 5 N -0.311 5.311 6 C 0.134 3.866 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.171 4.171 10 N -0.548 5.548 11 Si 0.776 3.224 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.192 1.192 15 C 0.343 3.657 16 O -0.476 6.476 17 C -0.139 4.139 18 C -0.107 4.107 19 C -0.139 4.139 20 C -0.093 4.093 21 C -0.163 4.163 22 C 0.046 3.954 23 O -0.307 6.307 24 C -0.127 4.127 25 H 0.059 0.941 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.266 0.734 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.644 5.641 -6.624 9.094 hybrid contribution 0.704 0.076 0.601 0.929 sum -1.939 5.718 -6.023 8.528 Atomic orbital electron populations 1.22876 0.79978 1.03355 1.00654 1.88016 1.21205 1.28260 1.95476 1.22945 0.93463 0.84813 1.00966 1.21562 0.93016 0.99645 0.86726 1.48099 1.62852 1.09263 1.10857 1.19245 0.96139 0.73819 0.97431 1.21522 1.01395 0.92608 1.42886 0.92685 1.25588 1.00360 0.96205 0.94973 1.70036 1.37058 1.01786 1.45946 0.85717 0.80295 0.77217 0.79153 1.19940 1.20708 1.19160 1.18629 0.76301 0.85994 0.84796 1.90627 1.56547 1.14667 1.85762 1.19710 1.01410 0.99637 0.93096 1.22225 0.95712 0.92236 1.00519 1.21119 1.00992 1.00662 0.91094 1.20687 0.94580 0.96494 0.97522 1.20760 1.02951 1.00657 0.91932 1.17934 0.95207 0.96554 0.85754 1.84756 1.52303 1.58172 1.35492 1.21361 1.00036 0.99866 0.91391 0.94094 0.89325 0.92150 0.89545 0.94347 0.89681 0.88543 0.95899 0.95359 0.92306 0.83701 0.84123 0.89006 0.90695 0.90387 0.73414 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -15.18 9.45 -148.98 -1.41 -16.58 16 3 C 0.06 1.85 6.28 71.98 0.45 2.30 16 4 C 0.11 4.35 5.87 86.38 0.51 4.86 16 5 N -0.58 -26.31 2.42 -829.53 -2.01 -28.32 16 6 C 0.25 12.84 4.52 85.63 0.39 13.23 16 7 C -0.55 -28.40 6.84 25.60 0.18 -28.22 16 8 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 9 C 0.03 1.58 5.46 84.66 0.46 2.04 16 10 N -0.91 -50.05 13.29 21.45 0.28 -49.77 16 11 Si 0.95 41.06 29.54 68.60 2.03 43.09 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 15 C 0.55 25.21 7.24 86.79 0.63 25.83 16 16 O -0.59 -28.13 16.57 -3.88 -0.06 -28.19 16 17 C -0.14 -5.74 4.95 -20.10 -0.10 -5.84 16 18 C -0.09 -3.73 7.51 22.54 0.17 -3.56 16 19 C -0.12 -4.24 9.68 22.22 0.21 -4.02 16 20 C -0.09 -2.78 5.90 -19.71 -0.12 -2.90 16 21 C -0.11 -2.29 9.78 71.23 0.70 -1.59 16 22 C 0.09 2.82 6.67 22.47 0.15 2.97 16 23 O -0.49 -12.21 12.53 -92.51 -1.16 -13.36 16 24 C -0.11 -3.95 9.66 22.63 0.22 -3.73 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 3.31 8.07 -2.39 -0.02 3.29 16 31 H 0.10 3.51 7.36 -2.39 -0.02 3.49 16 32 H 0.02 1.27 7.03 -2.38 -0.02 1.25 16 33 H 0.03 1.53 5.40 -2.39 -0.01 1.52 16 34 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 35 H 0.15 6.84 4.74 -2.91 -0.01 6.83 16 36 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 39 H 0.08 1.59 7.52 -2.39 -0.02 1.57 16 40 H 0.41 5.73 9.06 -74.05 -0.67 5.06 16 41 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -66.51 344.84 3.14 -63.37 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.38 Total: 26.41 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.09 Total: 3.36 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -1.72 Total: -78.09 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -2.63 Total: -58.14 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -66.51 3.14 -63.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071229966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.924 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds