Wall clock time and date at job start Tue Mar 31 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 117.00447 * 2 1 4 4 O 1.20822 * 119.99445 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00184 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46956 * 180.02562 * 5 3 2 7 7 C 1.36946 * 119.99480 * 269.99461 * 6 5 3 8 8 H 1.08002 * 119.99717 * 143.98651 * 7 6 5 9 9 C 1.38806 * 120.00032 * 323.98308 * 7 6 5 10 10 N 1.31624 * 120.00101 * 156.55326 * 9 7 6 11 11 Si 1.86796 * 120.00166 * 336.55677 * 9 7 6 12 12 H 1.48502 * 109.47362 * 95.07493 * 11 9 7 13 13 H 1.48501 * 109.47380 * 215.07936 * 11 9 7 14 14 H 1.48503 * 109.47114 * 335.07263 * 11 9 7 15 15 C 1.46499 * 120.00504 * 89.99555 * 6 5 3 16 16 C 1.53002 * 109.46962 * 275.69979 * 15 6 5 17 17 O 1.42894 * 109.47032 * 69.11121 * 16 15 6 18 18 C 1.35904 * 117.00219 * 179.97438 * 17 16 15 19 19 C 1.38735 * 120.04986 * 359.72185 * 18 17 16 20 20 C 1.38150 * 119.93760 * 179.77270 * 19 18 17 21 21 C 1.38263 * 120.05908 * 0.50555 * 20 19 18 22 22 C 1.50695 * 119.94651 * 179.76943 * 21 20 19 23 23 C 1.38271 * 120.10842 * 359.74303 * 21 20 19 24 24 C 1.38144 * 120.05669 * 0.02562 * 23 21 20 25 25 H 1.09000 * 109.47587 * 60.00041 * 1 2 3 26 26 H 1.09002 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46901 * 300.00125 * 1 2 3 28 28 H 1.08994 * 109.47555 * 59.99481 * 5 3 2 29 29 H 1.09006 * 109.46707 * 299.99537 * 5 3 2 30 30 H 0.96996 * 119.99753 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.46891 * 155.69944 * 15 6 5 32 32 H 1.08996 * 109.47248 * 35.70048 * 15 6 5 33 33 H 1.08992 * 109.47398 * 309.10748 * 16 15 6 34 34 H 1.09002 * 109.46682 * 189.10482 * 16 15 6 35 35 H 1.07995 * 120.03122 * 359.97438 * 19 18 17 36 36 H 1.08000 * 119.96930 * 180.24664 * 20 19 18 37 37 H 1.08999 * 109.47046 * 269.97569 * 22 21 20 38 38 H 1.09005 * 109.47185 * 29.97462 * 22 21 20 39 39 H 1.08998 * 109.47496 * 149.97329 * 22 21 20 40 40 H 1.07998 * 119.96980 * 179.97438 * 23 21 20 41 41 H 1.07999 * 120.02749 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 0.0002 7 6 4.1755 3.3369 -1.1855 8 1 3.9104 4.3801 -1.2742 9 6 4.7126 2.6623 -2.2733 10 7 4.4871 3.0981 -3.4947 11 14 5.7553 1.1361 -2.0039 12 1 4.9031 -0.0738 -2.1271 13 1 6.8343 1.0875 -3.0230 14 1 6.3576 1.1812 -0.6472 15 6 4.1899 3.3814 1.2692 16 6 2.8507 3.9136 1.7832 17 8 2.0254 2.8184 2.1847 18 6 0.7923 3.1204 2.6698 19 6 0.3875 4.4441 2.7629 20 6 -0.8683 4.7483 3.2520 21 6 -1.7173 3.7354 3.6582 22 6 -3.0845 4.0703 4.1962 23 6 -1.3141 2.4157 3.5712 24 6 -0.0612 2.1060 3.0784 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 3.9558 0.7808 -0.8907 29 1 3.9563 0.7805 0.8893 30 1 4.8627 2.6269 -4.2548 31 1 4.8769 4.2136 1.1157 32 1 4.6118 2.6921 2.0006 33 1 2.3532 4.4720 0.9904 34 1 3.0239 4.5698 2.6362 35 1 1.0521 5.2359 2.4504 36 1 -1.1855 5.7783 3.3210 37 1 -3.0266 4.2068 5.2760 38 1 -3.4423 4.9897 3.7324 39 1 -3.7736 3.2569 3.9692 40 1 -1.9789 1.6263 3.8895 41 1 0.2534 1.0751 3.0110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080895851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:53 Heat of formation + Delta-G solvation = -66.128153 kcal Electronic energy + Delta-G solvation = -24730.924237 eV Core-core repulsion = 21191.756171 eV Total energy + Delta-G solvation = -3539.168066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85418 -39.28981 -37.50286 -36.08119 -34.95556 -32.17838 -31.58029 -30.83159 -29.74002 -27.88905 -26.20755 -25.92931 -24.10042 -22.47976 -21.26231 -20.64431 -20.01136 -17.91425 -17.13078 -16.67809 -16.20726 -15.62360 -15.47651 -15.19316 -15.02874 -14.88138 -14.18828 -13.96095 -13.55558 -13.36432 -13.29883 -13.03673 -12.76294 -12.65240 -12.16412 -12.08350 -11.87069 -11.67775 -11.45587 -11.32372 -11.24704 -10.90278 -10.64644 -10.48188 -10.21113 -10.16913 -9.92796 -9.73948 -9.40204 -8.79059 -8.62254 -7.67694 -7.10012 -6.12271 -3.54955 1.55336 1.70227 3.21682 3.31230 3.39926 3.45676 3.55576 3.77281 4.00582 4.39308 4.78094 4.95768 4.99526 5.15520 5.20801 5.34659 5.53301 5.56419 5.58011 5.62011 5.66244 5.73000 5.75524 5.81749 5.85566 5.87634 5.97026 6.01754 6.08222 6.20184 6.20957 6.34020 6.50879 6.58139 6.67846 6.76656 7.05795 7.28601 7.83184 7.92554 8.24431 8.70349 8.93092 9.54221 9.89312 11.02357 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023022 B = 0.005098 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.915951 B = 5490.662799 C = 6048.804659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.381 6.381 3 C 0.432 3.568 4 O -0.477 6.477 5 C 0.146 3.854 6 N -0.571 5.571 7 C -0.275 4.275 8 H 0.082 0.918 9 C 0.040 3.960 10 N -0.887 5.887 11 Si 0.867 3.133 12 H -0.280 1.280 13 H -0.295 1.295 14 H -0.263 1.263 15 C 0.150 3.850 16 C 0.043 3.957 17 O -0.299 6.299 18 C 0.162 3.838 19 C -0.208 4.208 20 C -0.079 4.079 21 C -0.146 4.146 22 C -0.103 4.103 23 C -0.082 4.082 24 C -0.161 4.161 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.266 0.734 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.120 0.880 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.728 -2.080 14.168 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.299 6.299 3 C 0.271 3.729 4 O -0.360 6.360 5 C 0.017 3.983 6 N -0.291 5.291 7 C -0.403 4.403 8 H 0.099 0.901 9 C -0.162 4.162 10 N -0.526 5.526 11 Si 0.696 3.304 12 H -0.208 1.208 13 H -0.223 1.223 14 H -0.187 1.187 15 C 0.024 3.976 16 C -0.034 4.034 17 O -0.211 6.211 18 C 0.115 3.885 19 C -0.226 4.226 20 C -0.097 4.097 21 C -0.146 4.146 22 C -0.160 4.160 23 C -0.100 4.100 24 C -0.179 4.179 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.785 -1.913 13.928 16.578 hybrid contribution 0.126 -0.520 -0.232 0.583 sum -8.659 -2.433 13.696 16.386 Atomic orbital electron populations 1.23025 0.78991 1.01930 1.01877 1.86582 1.21681 1.36156 1.85435 1.25977 0.93773 0.80843 0.72353 1.90526 1.66409 1.36137 1.42943 1.21127 0.85851 0.88932 1.02351 1.43853 1.74344 1.08007 1.02884 1.18739 1.37506 0.97131 0.86957 0.90085 1.25425 0.97793 0.97957 0.95034 1.69904 1.43379 1.41565 0.97767 0.87080 0.81440 0.83403 0.78445 1.20832 1.22286 1.18748 1.21091 0.91968 0.97360 0.87216 1.23711 0.93348 0.88580 0.97792 1.86065 1.23154 1.36020 1.75846 1.18983 0.85744 0.92725 0.91031 1.21245 0.98583 0.95742 1.07079 1.20752 0.93085 0.98547 0.97338 1.19663 0.97089 0.93321 1.04527 1.20642 0.93317 1.01666 1.00375 1.20711 0.95095 0.95724 0.98465 1.20327 0.94078 0.98262 1.05276 0.92862 0.89657 0.92597 0.89513 0.90066 0.92407 0.89233 0.93181 0.91164 0.93722 0.85713 0.86476 0.91976 0.92094 0.92090 0.86161 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.56 101.05 1.07 1.65 16 2 O -0.38 -7.50 10.56 -39.26 -0.41 -7.92 16 3 C 0.43 9.57 6.83 36.00 0.25 9.82 16 4 O -0.48 -11.43 12.46 -26.58 -0.33 -11.76 16 5 C 0.15 3.22 4.98 -5.20 -0.03 3.19 16 6 N -0.57 -13.15 1.69 -174.61 -0.29 -13.44 16 7 C -0.28 -7.45 9.89 -15.06 -0.15 -7.60 16 8 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 9 C 0.04 1.11 5.29 -17.43 -0.09 1.02 16 10 N -0.89 -26.49 13.97 55.49 0.78 -25.71 16 11 Si 0.87 20.87 25.06 -169.99 -4.26 16.61 16 12 H -0.28 -6.60 6.64 56.52 0.38 -6.22 16 13 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.26 -6.02 7.11 56.52 0.40 -5.61 16 15 C 0.15 2.80 6.13 -4.04 -0.02 2.77 16 16 C 0.04 0.77 4.34 37.16 0.16 0.93 16 17 O -0.30 -5.61 6.57 -43.09 -0.28 -5.89 16 18 C 0.16 2.83 6.00 -39.22 -0.24 2.59 16 19 C -0.21 -3.33 9.04 -39.43 -0.36 -3.68 16 20 C -0.08 -1.10 9.69 -39.60 -0.38 -1.49 16 21 C -0.15 -1.90 5.88 -104.60 -0.62 -2.52 16 22 C -0.10 -1.00 10.01 36.00 0.36 -0.64 16 23 C -0.08 -1.10 9.69 -39.60 -0.38 -1.48 16 24 C -0.16 -2.52 9.31 -39.44 -0.37 -2.89 16 25 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.87 7.10 -51.92 -0.37 0.51 16 28 H 0.09 2.04 3.14 -51.93 -0.16 1.88 16 29 H 0.08 1.54 7.95 -51.93 -0.41 1.13 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.09 1.56 7.99 -51.93 -0.42 1.15 16 32 H 0.05 0.84 7.97 -51.93 -0.41 0.42 16 33 H 0.07 1.44 7.60 -51.93 -0.39 1.04 16 34 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 35 H 0.12 1.91 6.30 -52.49 -0.33 1.58 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 40 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.12 1.83 7.74 -52.49 -0.41 1.42 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -31.89 335.32 -6.39 -38.28 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.84 Total: 3.11 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.80 Total: 1.67 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.48 Total: -39.15 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -1.03 Total: -25.57 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.26 Total: 16.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.89 -6.39 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080895851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.846 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds