Wall clock time and date at job start Tue Mar 31 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 117.00447 * 2 1 4 4 O 1.20822 * 119.99445 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00184 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46956 * 180.02562 * 5 3 2 7 7 C 1.36946 * 119.99480 * 269.99461 * 6 5 3 8 8 H 1.08002 * 119.99717 * 143.98651 * 7 6 5 9 9 C 1.38806 * 120.00032 * 323.98308 * 7 6 5 10 10 N 1.31624 * 120.00101 * 156.55326 * 9 7 6 11 11 Si 1.86796 * 120.00166 * 336.55677 * 9 7 6 12 12 H 1.48502 * 109.47362 * 95.07493 * 11 9 7 13 13 H 1.48501 * 109.47380 * 215.07936 * 11 9 7 14 14 H 1.48503 * 109.47114 * 335.07263 * 11 9 7 15 15 C 1.46499 * 120.00504 * 89.99555 * 6 5 3 16 16 C 1.53002 * 109.46962 * 275.69979 * 15 6 5 17 17 O 1.42894 * 109.47032 * 69.11121 * 16 15 6 18 18 C 1.35904 * 117.00219 * 179.97438 * 17 16 15 19 19 C 1.38735 * 120.04986 * 359.72185 * 18 17 16 20 20 C 1.38150 * 119.93760 * 179.77270 * 19 18 17 21 21 C 1.38263 * 120.05908 * 0.50555 * 20 19 18 22 22 C 1.50695 * 119.94651 * 179.76943 * 21 20 19 23 23 C 1.38271 * 120.10842 * 359.74303 * 21 20 19 24 24 C 1.38144 * 120.05669 * 0.02562 * 23 21 20 25 25 H 1.09000 * 109.47587 * 60.00041 * 1 2 3 26 26 H 1.09002 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46901 * 300.00125 * 1 2 3 28 28 H 1.08994 * 109.47555 * 59.99481 * 5 3 2 29 29 H 1.09006 * 109.46707 * 299.99537 * 5 3 2 30 30 H 0.96996 * 119.99753 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.46891 * 155.69944 * 15 6 5 32 32 H 1.08996 * 109.47248 * 35.70048 * 15 6 5 33 33 H 1.08992 * 109.47398 * 309.10748 * 16 15 6 34 34 H 1.09002 * 109.46682 * 189.10482 * 16 15 6 35 35 H 1.07995 * 120.03122 * 359.97438 * 19 18 17 36 36 H 1.08000 * 119.96930 * 180.24664 * 20 19 18 37 37 H 1.08999 * 109.47046 * 269.97569 * 22 21 20 38 38 H 1.09005 * 109.47185 * 29.97462 * 22 21 20 39 39 H 1.08998 * 109.47496 * 149.97329 * 22 21 20 40 40 H 1.07998 * 119.96980 * 179.97438 * 23 21 20 41 41 H 1.07999 * 120.02749 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 0.0002 7 6 4.1755 3.3369 -1.1855 8 1 3.9104 4.3801 -1.2742 9 6 4.7126 2.6623 -2.2733 10 7 4.4871 3.0981 -3.4947 11 14 5.7553 1.1361 -2.0039 12 1 4.9031 -0.0738 -2.1271 13 1 6.8343 1.0875 -3.0230 14 1 6.3576 1.1812 -0.6472 15 6 4.1899 3.3814 1.2692 16 6 2.8507 3.9136 1.7832 17 8 2.0254 2.8184 2.1847 18 6 0.7923 3.1204 2.6698 19 6 0.3875 4.4441 2.7629 20 6 -0.8683 4.7483 3.2520 21 6 -1.7173 3.7354 3.6582 22 6 -3.0845 4.0703 4.1962 23 6 -1.3141 2.4157 3.5712 24 6 -0.0612 2.1060 3.0784 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 3.9558 0.7808 -0.8907 29 1 3.9563 0.7805 0.8893 30 1 4.8627 2.6269 -4.2548 31 1 4.8769 4.2136 1.1157 32 1 4.6118 2.6921 2.0006 33 1 2.3532 4.4720 0.9904 34 1 3.0239 4.5698 2.6362 35 1 1.0521 5.2359 2.4504 36 1 -1.1855 5.7783 3.3210 37 1 -3.0266 4.2068 5.2760 38 1 -3.4423 4.9897 3.7324 39 1 -3.7736 3.2569 3.9692 40 1 -1.9789 1.6263 3.8895 41 1 0.2534 1.0751 3.0110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080895851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:53 Heat of formation + Delta-G solvation = -84.300650 kcal Electronic energy + Delta-G solvation = -24731.712255 eV Core-core repulsion = 21191.756171 eV Total energy + Delta-G solvation = -3539.956084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.25370 -40.75611 -38.80286 -37.67775 -36.68429 -33.99656 -32.87452 -31.95729 -31.24107 -29.49069 -27.70867 -27.06482 -25.70142 -23.84102 -22.59339 -22.04008 -21.62929 -19.27440 -18.90735 -18.41207 -17.83967 -17.11426 -16.93059 -16.71341 -16.51004 -16.17910 -15.53724 -15.31060 -14.92679 -14.65208 -14.50467 -14.41661 -14.33593 -14.17401 -13.85794 -13.36156 -13.08741 -13.00722 -12.83760 -12.71626 -12.51961 -12.41130 -12.25186 -12.09363 -11.70385 -11.64851 -11.54467 -11.44221 -11.15393 -10.64649 -9.91374 -8.99400 -8.84198 -8.24899 -5.66295 0.42765 0.57136 1.32183 1.43325 1.53233 1.68122 2.00393 2.39227 2.48475 2.87005 2.97112 3.26401 3.89060 3.99913 4.11043 4.21668 4.26466 4.30383 4.33704 4.36646 4.39000 4.44116 4.45785 4.48452 4.52384 4.62879 4.71714 4.84397 4.89169 4.90999 5.10028 5.12334 5.21204 5.41899 5.51742 5.65276 5.70978 5.83715 5.97916 6.13171 6.63978 6.77666 7.19478 7.50885 7.89471 8.94229 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023022 B = 0.005098 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.915951 B = 5490.662799 C = 6048.804659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.431 3.569 4 O -0.502 6.502 5 C 0.141 3.859 6 N -0.581 5.581 7 C -0.264 4.264 8 H 0.037 0.963 9 C -0.018 4.018 10 N -0.942 5.942 11 Si 0.935 3.065 12 H -0.271 1.271 13 H -0.302 1.302 14 H -0.238 1.238 15 C 0.145 3.855 16 C 0.055 3.945 17 O -0.313 6.313 18 C 0.130 3.870 19 C -0.225 4.225 20 C -0.088 4.088 21 C -0.143 4.143 22 C -0.102 4.102 23 C -0.081 4.081 24 C -0.172 4.172 25 H 0.039 0.961 26 H 0.129 0.871 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.265 0.735 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.151 0.849 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.776 -3.905 16.746 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.271 3.729 4 O -0.388 6.388 5 C 0.012 3.988 6 N -0.302 5.302 7 C -0.394 4.394 8 H 0.055 0.945 9 C -0.215 4.215 10 N -0.585 5.585 11 Si 0.762 3.238 12 H -0.198 1.198 13 H -0.230 1.230 14 H -0.161 1.161 15 C 0.020 3.980 16 C -0.022 4.022 17 O -0.226 6.226 18 C 0.084 3.916 19 C -0.244 4.244 20 C -0.105 4.105 21 C -0.144 4.144 22 C -0.158 4.158 23 C -0.099 4.099 24 C -0.190 4.190 25 H 0.058 0.942 26 H 0.147 0.853 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.156 0.844 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.169 0.831 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.847 -3.755 16.562 19.630 hybrid contribution 0.226 0.094 -0.951 0.982 sum -9.622 -3.662 15.611 18.700 Atomic orbital electron populations 1.23321 0.76716 1.04656 1.01357 1.86530 1.23801 1.34598 1.84923 1.25890 0.94061 0.81107 0.71860 1.90531 1.67018 1.37109 1.44123 1.21205 0.85981 0.88265 1.03338 1.43901 1.74910 1.08482 1.02884 1.18543 1.36356 0.95717 0.88739 0.94496 1.26105 0.99042 1.01941 0.94416 1.70046 1.45394 1.44188 0.98854 0.85986 0.79181 0.79438 0.79220 1.19790 1.23036 1.16054 1.21324 0.92658 0.98041 0.85957 1.23447 0.92510 0.88623 0.97649 1.85997 1.23988 1.36111 1.76506 1.19295 0.85822 0.93806 0.92713 1.21375 0.99720 0.95353 1.07979 1.21085 0.92446 1.00153 0.96864 1.20135 0.98340 0.92943 1.02933 1.20709 0.91278 1.02604 1.01227 1.21097 0.94546 0.96909 0.97372 1.20515 0.94822 0.97968 1.05725 0.94175 0.85277 0.92383 0.90826 0.86418 0.92556 0.88624 0.90126 0.95017 0.90837 0.86228 0.84389 0.90379 0.91296 0.90692 0.83119 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 10.56 113.37 1.20 2.20 16 2 O -0.38 -14.40 10.56 -51.43 -0.54 -14.94 16 3 C 0.43 18.84 6.83 71.24 0.49 19.33 16 4 O -0.50 -24.42 12.46 29.46 0.37 -24.05 16 5 C 0.14 5.97 4.98 85.63 0.43 6.40 16 6 N -0.58 -26.67 1.69 -706.35 -1.19 -27.86 16 7 C -0.26 -14.76 9.89 84.03 0.83 -13.93 16 8 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 9 C -0.02 -1.02 5.29 84.86 0.45 -0.57 16 10 N -0.94 -58.55 13.97 21.65 0.30 -58.25 16 11 Si 0.94 43.18 25.06 68.60 1.72 44.90 16 12 H -0.27 -11.97 6.64 99.48 0.66 -11.31 16 13 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 14 H -0.24 -9.90 7.11 99.48 0.71 -9.19 16 15 C 0.14 5.30 6.13 86.38 0.53 5.83 16 16 C 0.05 1.98 4.34 71.98 0.31 2.29 16 17 O -0.31 -11.70 6.57 -69.85 -0.46 -12.16 16 18 C 0.13 4.50 6.00 22.51 0.14 4.64 16 19 C -0.23 -7.25 9.04 22.37 0.20 -7.04 16 20 C -0.09 -2.33 9.69 22.25 0.22 -2.11 16 21 C -0.14 -3.38 5.88 -19.85 -0.12 -3.50 16 22 C -0.10 -1.60 10.01 71.23 0.71 -0.89 16 23 C -0.08 -1.99 9.69 22.26 0.22 -1.77 16 24 C -0.17 -5.18 9.31 22.36 0.21 -4.97 16 25 H 0.04 1.30 8.13 -2.39 -0.02 1.28 16 26 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.06 1.72 7.10 -2.38 -0.02 1.71 16 28 H 0.07 3.34 3.14 -2.39 -0.01 3.33 16 29 H 0.12 4.10 7.95 -2.38 -0.02 4.08 16 30 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.10 3.32 7.99 -2.39 -0.02 3.30 16 32 H 0.08 2.48 7.97 -2.39 -0.02 2.46 16 33 H 0.03 1.37 7.60 -2.39 -0.02 1.35 16 34 H 0.07 2.17 7.65 -2.39 -0.02 2.15 16 35 H 0.12 3.80 6.30 -2.91 -0.02 3.79 16 36 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.00 8.08 -2.38 -0.02 0.98 16 39 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 40 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 41 H 0.12 3.53 7.74 -2.91 -0.02 3.51 16 Total: -1.00 -72.11 335.32 6.98 -65.13 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.98 Total: 21.32 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.81 Total: 5.91 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -0.89 Total: -86.11 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.64 Total: -51.15 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.72 Total: 44.90 kcal Total: -72.11 6.98 -65.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080895851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.169 kcal (2) G-P(sol) polarization free energy of solvation -72.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds