Wall clock time and date at job start Tue Mar 31 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00226 * 2 1 4 4 H 1.48505 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47445 * 300.00040 * 3 2 1 6 6 H 1.48502 * 109.47071 * 60.00333 * 3 2 1 7 7 C 1.37876 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99825 * 170.97689 * 7 2 1 9 9 C 1.50697 * 120.00224 * 350.97763 * 7 2 1 10 10 C 1.53001 * 115.54880 * 324.28979 * 9 7 2 11 11 N 1.46897 * 109.46837 * 306.37827 * 10 9 7 12 12 C 1.46959 * 110.99896 * 164.13247 * 11 10 9 13 13 C 1.53047 * 109.36725 * 183.19173 * 12 11 10 14 14 N 1.46963 * 109.36228 * 301.59797 * 13 12 11 15 15 C 1.38607 * 110.99935 * 183.18781 * 14 13 12 16 16 N 1.29684 * 124.95171 * 0.02562 * 15 14 13 17 17 C 1.32122 * 116.86902 * 179.97438 * 16 15 14 18 18 C 1.33320 * 114.57756 * 0.02562 * 17 16 15 19 19 S 1.70962 * 124.94988 * 179.97438 * 15 14 13 20 20 C 1.46959 * 110.87945 * 59.31915 * 14 13 12 21 21 C 1.46953 * 111.00094 * 287.92822 * 11 10 9 22 22 C 1.53006 * 117.50111 * 109.95579 * 9 7 2 23 23 C 1.52998 * 117.50072 * 178.61456 * 9 7 2 24 24 H 0.97002 * 119.99589 * 5.00973 * 1 2 3 25 25 H 1.09004 * 109.46973 * 186.38015 * 10 9 7 26 26 H 1.08993 * 109.47294 * 66.38149 * 10 9 7 27 27 H 1.09001 * 109.49079 * 63.22140 * 12 11 10 28 28 H 1.09008 * 109.48461 * 303.15438 * 12 11 10 29 29 H 1.09000 * 109.49492 * 181.63157 * 13 12 11 30 30 H 1.09001 * 109.50842 * 61.56878 * 13 12 11 31 31 H 1.08003 * 122.70750 * 179.97438 * 17 16 15 32 32 H 1.08001 * 125.95165 * 180.02562 * 18 17 16 33 33 H 1.08993 * 109.48821 * 60.64738 * 20 14 13 34 34 H 1.08999 * 109.48590 * 180.71634 * 20 14 13 35 35 H 1.08997 * 109.49074 * 296.77569 * 21 11 10 36 36 H 1.08998 * 109.48727 * 56.82862 * 21 11 10 37 37 H 1.09003 * 117.50068 * 215.00539 * 22 9 7 38 38 H 1.09000 * 117.49570 * 0.02562 * 22 9 7 39 39 H 1.08994 * 117.49859 * 359.97438 * 23 9 7 40 40 H 1.09002 * 117.50090 * 144.97650 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0744 -1.1999 -0.1472 9 6 1.2649 -2.4912 0.2035 10 6 0.0858 -2.4324 1.1768 11 7 0.5359 -1.8717 2.4578 12 6 -0.6076 -1.4501 3.2790 13 6 -0.0957 -0.8007 4.5668 14 7 0.7465 -1.7601 5.2949 15 6 1.1711 -1.2310 6.5036 16 7 0.8708 -0.0486 6.9434 17 6 1.3633 0.2935 8.1207 18 6 2.1142 -0.6430 8.7009 19 16 2.1660 -2.0426 7.6324 20 6 1.8900 -2.1817 4.4737 21 6 1.3780 -2.8311 3.1858 22 6 1.1436 -3.4318 -0.9971 23 6 2.0814 -3.7843 0.1601 24 1 -0.4849 0.8369 -0.0734 25 1 -0.3035 -3.4379 1.3370 26 1 -0.6987 -1.8013 0.7595 27 1 -1.2171 -2.3190 3.5272 28 1 -1.2089 -0.7306 2.7230 29 1 -0.9421 -0.5133 5.1906 30 1 0.4912 0.0841 4.3199 31 1 1.1737 1.2544 8.5758 32 1 2.6042 -0.5587 9.6597 33 1 2.4994 -1.3128 4.2255 34 1 2.4912 -2.9012 5.0296 35 1 0.7910 -3.7157 3.4331 36 1 2.2242 -3.1187 2.5620 37 1 0.2238 -4.0087 -1.0936 38 1 1.5991 -3.1125 -1.9345 39 1 3.1534 -3.6970 -0.0165 40 1 1.7789 -4.5932 0.8252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:56 Heat of formation + Delta-G solvation = 102.321485 kcal Electronic energy + Delta-G solvation = -21997.412654 eV Core-core repulsion = 18940.594735 eV Total energy + Delta-G solvation = -3056.817919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10883 -38.47871 -36.67339 -34.17852 -31.99933 -30.64920 -29.67968 -27.45671 -25.46995 -24.46598 -23.43570 -22.93090 -21.12951 -20.21069 -19.06052 -18.89738 -18.32821 -16.37370 -16.02216 -15.16671 -14.85000 -14.66746 -14.59694 -14.28779 -14.14413 -13.78639 -13.42243 -13.27275 -12.84050 -12.51679 -11.99296 -11.49459 -11.40726 -11.13309 -10.91436 -10.87705 -10.74610 -10.59673 -10.45578 -10.40285 -9.99531 -9.86933 -9.56349 -9.29072 -9.21807 -8.94789 -8.61251 -8.04289 -7.96973 -7.23270 -5.88891 -3.90582 0.81127 1.21945 1.78843 2.85681 3.34623 3.44133 3.46662 3.74629 4.48628 4.60781 4.67152 5.14570 5.18859 5.23182 5.41275 5.48703 5.59024 5.65679 5.69207 5.81489 5.88905 5.96855 6.14601 6.18662 6.30693 6.40540 6.45769 6.51284 6.58430 6.69528 6.74750 6.81142 6.96934 6.99581 7.18988 7.35598 7.57704 7.84139 8.01522 8.13269 8.18598 8.56956 9.03105 9.69629 11.13736 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.018632 B = 0.005072 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.440394 B = 5518.960777 C = 6219.069440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.090 3.910 3 Si 0.887 3.113 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.471 4.471 8 H 0.053 0.947 9 C 0.068 3.932 10 C 0.105 3.895 11 N -0.498 5.498 12 C 0.061 3.939 13 C 0.075 3.925 14 N -0.451 5.451 15 C 0.242 3.758 16 N -0.524 5.524 17 C 0.066 3.934 18 C -0.294 4.294 19 S 0.121 5.879 20 C 0.061 3.939 21 C 0.060 3.940 22 C -0.206 4.206 23 C -0.220 4.220 24 H 0.256 0.744 25 H -0.011 1.011 26 H 0.117 0.883 27 H 0.025 0.975 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.172 0.828 32 H 0.173 0.827 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -3.466 14.000 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.508 4.508 8 H 0.071 0.929 9 C 0.067 3.933 10 C -0.022 4.022 11 N -0.222 5.222 12 C -0.068 4.068 13 C -0.053 4.053 14 N -0.172 5.172 15 C -0.128 4.128 16 N -0.245 5.245 17 C -0.085 4.085 18 C -0.434 4.434 19 S 0.372 5.628 20 C -0.066 4.066 21 C -0.069 4.069 22 C -0.245 4.245 23 C -0.257 4.257 24 H 0.066 0.934 25 H 0.007 0.993 26 H 0.135 0.865 27 H 0.043 0.957 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.189 0.811 32 H 0.191 0.809 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.487 -3.996 13.713 14.360 hybrid contribution 0.199 1.526 0.515 1.623 sum 1.685 -2.470 14.228 14.539 Atomic orbital electron populations 1.69773 1.05937 1.25994 1.49808 1.24700 0.94531 0.98306 0.93719 0.86642 0.80202 0.84280 0.77307 1.20117 1.21529 1.20998 1.20303 0.92975 0.88913 1.48655 0.92852 1.18950 0.93558 0.88494 0.92314 1.21743 0.98919 0.94196 0.87301 1.61861 1.18208 1.39052 1.03047 1.22151 0.93271 0.99065 0.92302 1.22205 0.96425 0.93011 0.93694 1.59319 1.19166 1.37164 1.01540 1.25307 0.97438 0.90965 0.99069 1.66891 1.28331 1.13888 1.15394 1.21540 0.95862 1.00647 0.90496 1.26707 1.12366 0.97348 1.06966 1.83831 1.48625 1.18772 1.11546 1.22545 0.89857 1.00466 0.93686 1.22175 0.99146 0.93084 0.92474 1.22964 0.99278 1.07703 0.94563 1.22964 0.96852 1.02441 1.03466 0.93356 0.99348 0.86504 0.95704 0.89191 0.90023 0.91890 0.81077 0.80937 0.91861 0.90447 0.95548 0.88664 0.92023 0.90497 0.90895 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.21 10.72 55.43 0.59 -22.61 16 2 C 0.09 2.37 5.17 -17.82 -0.09 2.28 16 3 Si 0.89 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.47 -12.38 8.72 -34.44 -0.30 -12.68 16 8 H 0.05 1.44 7.83 -52.49 -0.41 1.03 16 9 C 0.07 1.60 1.57 -155.66 -0.24 1.35 16 10 C 0.11 2.35 4.04 -3.82 -0.02 2.34 16 11 N -0.50 -10.28 4.23 -234.47 -0.99 -11.27 16 12 C 0.06 1.14 5.58 -3.77 -0.02 1.12 16 13 C 0.08 1.32 4.94 -3.76 -0.02 1.30 16 14 N -0.45 -7.38 4.78 -175.22 -0.84 -8.22 16 15 C 0.24 3.74 6.73 -87.69 -0.59 3.15 16 16 N -0.52 -8.30 9.50 -15.21 -0.14 -8.44 16 17 C 0.07 0.83 11.34 -19.14 -0.22 0.61 16 18 C -0.29 -3.20 11.34 29.01 0.33 -2.87 16 19 S 0.12 1.48 22.33 -107.50 -2.40 -0.92 16 20 C 0.06 0.99 5.46 -3.76 -0.02 0.97 16 21 C 0.06 1.08 5.37 -3.77 -0.02 1.06 16 22 C -0.21 -4.58 9.96 -26.69 -0.27 -4.84 16 23 C -0.22 -4.60 8.43 -26.70 -0.23 -4.83 16 24 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 25 H -0.01 -0.25 7.99 -51.93 -0.42 -0.66 16 26 H 0.12 2.89 5.80 -51.93 -0.30 2.59 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 1.77 8.02 -51.92 -0.42 1.35 16 29 H 0.08 1.36 7.98 -51.93 -0.41 0.95 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.06 7.44 -51.93 -0.39 0.68 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 1.79 6.20 -51.93 -0.32 1.47 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -27.55 331.89 -11.53 -39.08 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.03 Total: 2.30 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.70 Total: -11.05 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -1.38 Total: -50.54 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.40 Total: -0.92 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.55 -11.53 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.406 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds