Wall clock time and date at job start Tue Mar 31 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00226 * 2 1 4 4 H 1.48505 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47445 * 300.00040 * 3 2 1 6 6 H 1.48502 * 109.47071 * 60.00333 * 3 2 1 7 7 C 1.37876 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99825 * 170.97689 * 7 2 1 9 9 C 1.50697 * 120.00224 * 350.97763 * 7 2 1 10 10 C 1.53001 * 115.54880 * 324.28979 * 9 7 2 11 11 N 1.46897 * 109.46837 * 306.37827 * 10 9 7 12 12 C 1.46959 * 110.99896 * 164.13247 * 11 10 9 13 13 C 1.53047 * 109.36725 * 183.19173 * 12 11 10 14 14 N 1.46963 * 109.36228 * 301.59797 * 13 12 11 15 15 C 1.38607 * 110.99935 * 183.18781 * 14 13 12 16 16 N 1.29684 * 124.95171 * 0.02562 * 15 14 13 17 17 C 1.32122 * 116.86902 * 179.97438 * 16 15 14 18 18 C 1.33320 * 114.57756 * 0.02562 * 17 16 15 19 19 S 1.70962 * 124.94988 * 179.97438 * 15 14 13 20 20 C 1.46959 * 110.87945 * 59.31915 * 14 13 12 21 21 C 1.46953 * 111.00094 * 287.92822 * 11 10 9 22 22 C 1.53006 * 117.50111 * 109.95579 * 9 7 2 23 23 C 1.52998 * 117.50072 * 178.61456 * 9 7 2 24 24 H 0.97002 * 119.99589 * 5.00973 * 1 2 3 25 25 H 1.09004 * 109.46973 * 186.38015 * 10 9 7 26 26 H 1.08993 * 109.47294 * 66.38149 * 10 9 7 27 27 H 1.09001 * 109.49079 * 63.22140 * 12 11 10 28 28 H 1.09008 * 109.48461 * 303.15438 * 12 11 10 29 29 H 1.09000 * 109.49492 * 181.63157 * 13 12 11 30 30 H 1.09001 * 109.50842 * 61.56878 * 13 12 11 31 31 H 1.08003 * 122.70750 * 179.97438 * 17 16 15 32 32 H 1.08001 * 125.95165 * 180.02562 * 18 17 16 33 33 H 1.08993 * 109.48821 * 60.64738 * 20 14 13 34 34 H 1.08999 * 109.48590 * 180.71634 * 20 14 13 35 35 H 1.08997 * 109.49074 * 296.77569 * 21 11 10 36 36 H 1.08998 * 109.48727 * 56.82862 * 21 11 10 37 37 H 1.09003 * 117.50068 * 215.00539 * 22 9 7 38 38 H 1.09000 * 117.49570 * 0.02562 * 22 9 7 39 39 H 1.08994 * 117.49859 * 359.97438 * 23 9 7 40 40 H 1.09002 * 117.50090 * 144.97650 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0744 -1.1999 -0.1472 9 6 1.2649 -2.4912 0.2035 10 6 0.0858 -2.4324 1.1768 11 7 0.5359 -1.8717 2.4578 12 6 -0.6076 -1.4501 3.2790 13 6 -0.0957 -0.8007 4.5668 14 7 0.7465 -1.7601 5.2949 15 6 1.1711 -1.2310 6.5036 16 7 0.8708 -0.0486 6.9434 17 6 1.3633 0.2935 8.1207 18 6 2.1142 -0.6430 8.7009 19 16 2.1660 -2.0426 7.6324 20 6 1.8900 -2.1817 4.4737 21 6 1.3780 -2.8311 3.1858 22 6 1.1436 -3.4318 -0.9971 23 6 2.0814 -3.7843 0.1601 24 1 -0.4849 0.8369 -0.0734 25 1 -0.3035 -3.4379 1.3370 26 1 -0.6987 -1.8013 0.7595 27 1 -1.2171 -2.3190 3.5272 28 1 -1.2089 -0.7306 2.7230 29 1 -0.9421 -0.5133 5.1906 30 1 0.4912 0.0841 4.3199 31 1 1.1737 1.2544 8.5758 32 1 2.6042 -0.5587 9.6597 33 1 2.4994 -1.3128 4.2255 34 1 2.4912 -2.9012 5.0296 35 1 0.7910 -3.7157 3.4331 36 1 2.2242 -3.1187 2.5620 37 1 0.2238 -4.0087 -1.0936 38 1 1.5991 -3.1125 -1.9345 39 1 3.1534 -3.6970 -0.0165 40 1 1.7789 -4.5932 0.8252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:56 Heat of formation + Delta-G solvation = 86.299710 kcal Electronic energy + Delta-G solvation = -21998.107411 eV Core-core repulsion = 18940.594735 eV Total energy + Delta-G solvation = -3057.512675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.28081 -39.82245 -38.27204 -35.64851 -33.99128 -32.03703 -30.83455 -28.82645 -27.40954 -25.81287 -24.82002 -24.29732 -22.84204 -21.44431 -20.76108 -20.33433 -19.41234 -18.03459 -17.37752 -16.63027 -16.37338 -15.99053 -15.90582 -15.83014 -15.59359 -15.33214 -14.93844 -14.58486 -14.21980 -13.95359 -13.53085 -13.16981 -12.90801 -12.84673 -12.45980 -12.39642 -12.27323 -12.23022 -12.15926 -12.04340 -11.74554 -11.14879 -11.00635 -10.87930 -10.62967 -10.42492 -10.25155 -9.85997 -9.14970 -8.80112 -7.88680 -5.94845 -0.20008 0.21348 0.83525 1.40903 1.47429 1.52963 1.84292 2.50823 2.59370 3.07137 3.32690 3.51497 3.78773 3.90990 4.03645 4.22068 4.26936 4.34442 4.43567 4.47240 4.51086 4.60146 4.64472 4.75081 4.79722 4.88629 4.93843 4.97671 5.00645 5.06152 5.19159 5.21761 5.37216 5.51848 5.60568 5.70270 5.78024 6.08674 6.45510 6.53711 6.68949 6.82919 7.03532 7.65908 9.11095 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.018632 B = 0.005072 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.440394 B = 5518.960777 C = 6219.069440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.291 1.291 7 C -0.484 4.484 8 H 0.038 0.962 9 C 0.039 3.961 10 C 0.118 3.882 11 N -0.519 5.519 12 C 0.069 3.931 13 C 0.091 3.909 14 N -0.451 5.451 15 C 0.200 3.800 16 N -0.552 5.552 17 C 0.039 3.961 18 C -0.270 4.270 19 S 0.164 5.836 20 C 0.069 3.931 21 C 0.064 3.936 22 C -0.208 4.208 23 C -0.193 4.193 24 H 0.254 0.746 25 H -0.003 1.003 26 H 0.089 0.911 27 H 0.035 0.965 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.195 0.805 32 H 0.211 0.789 33 H 0.040 0.960 34 H 0.105 0.895 35 H 0.037 0.963 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -4.490 16.221 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.759 3.241 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.218 1.218 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.009 4.009 11 N -0.243 5.243 12 C -0.060 4.060 13 C -0.038 4.038 14 N -0.172 5.172 15 C -0.168 4.168 16 N -0.274 5.274 17 C -0.111 4.111 18 C -0.409 4.409 19 S 0.415 5.585 20 C -0.058 4.058 21 C -0.064 4.064 22 C -0.247 4.247 23 C -0.231 4.231 24 H 0.064 0.936 25 H 0.015 0.985 26 H 0.107 0.893 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.212 0.788 32 H 0.228 0.772 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.446 -5.022 15.944 16.895 hybrid contribution -0.022 1.850 -0.060 1.851 sum 2.425 -3.171 15.885 16.379 Atomic orbital electron populations 1.69886 1.06429 1.26096 1.50354 1.25137 0.95120 1.00139 0.93965 0.85960 0.79282 0.81991 0.76857 1.20163 1.21177 1.21753 1.20449 0.92437 0.90519 1.48714 0.94329 1.19016 0.94872 0.88535 0.93730 1.21442 0.97634 0.93953 0.87900 1.61764 1.19143 1.40168 1.03185 1.22031 0.92777 0.98893 0.92310 1.21899 0.96397 0.92149 0.93363 1.59357 1.19125 1.36965 1.01794 1.25399 0.99934 0.92084 0.99374 1.66847 1.28896 1.14639 1.16983 1.21935 0.96832 1.02256 0.90070 1.27232 1.10286 0.95887 1.07536 1.83641 1.46429 1.18344 1.10114 1.22453 0.89892 1.00021 0.93423 1.22133 0.98417 0.93039 0.92835 1.22956 1.00252 1.07366 0.94110 1.22924 0.96520 1.01185 1.02433 0.93618 0.98467 0.89313 0.94714 0.91098 0.89555 0.94898 0.78839 0.77222 0.94156 0.87652 0.94476 0.89485 0.90740 0.91444 0.90844 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.10 10.72 21.45 0.23 -47.87 16 2 C 0.06 3.07 5.17 84.65 0.44 3.51 16 3 Si 0.93 44.15 29.55 68.60 2.03 46.18 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.48 -25.73 8.72 25.60 0.22 -25.51 16 8 H 0.04 2.11 7.83 -2.91 -0.02 2.09 16 9 C 0.04 1.85 1.57 -52.93 -0.08 1.76 16 10 C 0.12 5.30 4.04 86.30 0.35 5.65 16 11 N -0.52 -21.58 4.23 -895.72 -3.79 -25.37 16 12 C 0.07 2.61 5.58 86.31 0.48 3.09 16 13 C 0.09 3.25 4.94 86.31 0.43 3.68 16 14 N -0.45 -14.49 4.78 -708.27 -3.38 -17.87 16 15 C 0.20 5.95 6.73 179.32 1.21 7.16 16 16 N -0.55 -16.97 9.50 -202.03 -1.92 -18.90 16 17 C 0.04 0.90 11.34 83.54 0.95 1.84 16 18 C -0.27 -4.89 11.34 66.71 0.76 -4.14 16 19 S 0.16 3.52 22.33 -56.49 -1.26 2.25 16 20 C 0.07 2.18 5.46 86.31 0.47 2.65 16 21 C 0.06 2.26 5.37 86.31 0.46 2.72 16 22 C -0.21 -9.07 9.96 30.62 0.30 -8.77 16 23 C -0.19 -7.81 8.43 30.62 0.26 -7.55 16 24 H 0.25 13.39 8.32 -92.71 -0.77 12.62 16 25 H 0.00 -0.11 7.99 -2.39 -0.02 -0.13 16 26 H 0.09 4.50 5.80 -2.39 -0.01 4.48 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 2.92 8.02 -2.38 -0.02 2.90 16 29 H 0.09 2.94 7.98 -2.39 -0.02 2.92 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.19 3.31 8.06 -2.91 -0.02 3.28 16 32 H 0.21 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 2.68 7.44 -2.39 -0.02 2.66 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 3.18 6.20 -2.39 -0.01 3.17 16 37 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.09 3.06 8.11 -2.39 -0.02 3.04 16 Total: -1.00 -59.61 331.89 -0.83 -60.44 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.02 Total: 15.03 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 6.24 Total: -13.89 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -8.86 Total: -110.01 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.26 Total: 2.25 kcal Total: -59.61 -0.83 -60.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.742 kcal (2) G-P(sol) polarization free energy of solvation -59.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds