Wall clock time and date at job start Tue Mar 31 2020 07:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46959 * 2 1 4 4 O 1.42896 * 109.46854 * 240.00056 * 2 1 3 5 5 C 1.52996 * 109.47086 * 119.99632 * 2 1 3 6 6 N 1.46500 * 109.47128 * 184.99967 * 5 2 1 7 7 C 1.34774 * 120.00119 * 180.02562 * 6 5 2 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47063 * 60.00398 * 20 18 16 22 22 H 1.48498 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47319 * 300.00306 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 H 1.08997 * 109.47430 * 300.00057 * 1 2 3 26 26 H 1.09001 * 109.47233 * 60.00151 * 1 2 3 27 27 H 1.08998 * 109.46962 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47093 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47025 * 299.99977 * 3 2 1 30 30 H 1.08997 * 109.47096 * 59.99739 * 3 2 1 31 31 H 0.96699 * 114.00614 * 60.00404 * 4 2 1 32 32 H 1.09008 * 109.46644 * 65.00292 * 5 2 1 33 33 H 1.08998 * 109.47635 * 305.00488 * 5 2 1 34 34 H 0.97001 * 119.99420 * 0.02562 * 6 5 2 35 35 H 1.09002 * 109.46571 * 59.99894 * 9 7 6 36 36 H 1.08992 * 109.46782 * 300.00158 * 9 7 6 37 37 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 38 38 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 40 40 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 7 3.5000 -0.6178 1.3110 7 6 4.1731 -1.1833 2.3325 8 8 3.5701 -1.7782 3.2005 9 6 5.6750 -1.0765 2.3963 10 6 6.1774 -1.7880 3.6261 11 6 6.3093 -1.0983 4.8179 12 6 6.7705 -1.7475 5.9483 13 6 7.0948 -3.0889 5.8921 14 6 6.9690 -3.7826 4.6960 15 8 7.2927 -5.0996 4.6361 16 6 7.8435 -5.6453 5.7392 17 1 7.9339 -5.0611 6.6430 18 6 8.2938 -6.9564 5.7130 19 7 8.1841 -7.6678 4.6119 20 14 9.0576 -7.7122 7.2411 21 1 8.0691 -7.6945 8.3491 22 1 9.4551 -9.1139 6.9542 23 1 10.2563 -6.9289 7.6345 24 6 6.5061 -3.1275 3.5619 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.7210 -0.2701 -1.9980 32 1 1.7516 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.9823 -0.1423 0.6165 35 1 5.9629 -0.0261 2.4406 36 1 6.1098 -1.5353 1.5084 37 1 6.0514 -0.0506 4.8655 38 1 6.8727 -1.2062 6.8772 39 1 7.4501 -3.5966 6.7767 40 1 8.4995 -8.5849 4.5936 41 1 6.4036 -3.6652 2.6310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089840788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:24 Heat of formation + Delta-G solvation = -98.126117 kcal Electronic energy + Delta-G solvation = -22722.500139 eV Core-core repulsion = 19181.944538 eV Total energy + Delta-G solvation = -3540.555601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.94708 -38.94205 -38.26206 -36.37966 -34.46893 -32.49066 -32.21956 -31.75104 -29.14799 -27.86729 -27.70152 -25.81637 -25.05263 -21.62562 -21.18695 -20.85278 -20.04760 -17.64536 -17.17073 -17.02559 -16.78206 -16.08760 -15.50398 -15.03951 -14.86130 -14.38919 -14.26479 -14.18859 -13.89062 -13.47590 -13.40886 -13.14628 -12.91839 -12.70361 -12.41080 -12.32460 -12.19680 -12.07453 -11.72344 -11.43627 -11.20743 -11.15603 -10.75036 -10.70253 -10.53618 -10.47407 -10.39667 -9.65077 -9.25398 -9.03266 -8.75396 -7.96776 -7.12419 -6.36005 -3.94986 2.19009 2.48792 2.87271 3.18574 3.19074 3.22397 3.29037 3.75017 4.03898 4.29807 4.45215 4.52256 4.64063 4.99488 5.07287 5.15139 5.17914 5.19500 5.28736 5.32256 5.44189 5.55302 5.59805 5.61721 5.66847 5.75359 5.81261 5.85488 6.02502 6.26929 6.43323 6.43996 6.75472 7.01530 7.15820 7.25331 7.36587 7.45598 7.52869 7.56095 7.92651 8.09152 8.41601 9.09611 9.81501 10.82370 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028020 B = 0.002803 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.057118 B = 9985.130162 C =10536.086784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.114 3.886 3 C -0.180 4.180 4 O -0.555 6.555 5 C 0.134 3.866 6 N -0.733 5.733 7 C 0.512 3.488 8 O -0.521 6.521 9 C -0.094 4.094 10 C -0.032 4.032 11 C -0.196 4.196 12 C -0.075 4.075 13 C -0.231 4.231 14 C 0.155 3.845 15 O -0.180 6.180 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.174 4.174 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.376 0.624 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.269 0.731 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.868 18.892 -10.097 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.073 3.927 3 C -0.237 4.237 4 O -0.362 6.362 5 C 0.010 3.990 6 N -0.387 5.387 7 C 0.299 3.701 8 O -0.395 6.395 9 C -0.133 4.133 10 C -0.033 4.033 11 C -0.215 4.215 12 C -0.094 4.094 13 C -0.251 4.251 14 C 0.102 3.898 15 O -0.084 6.084 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.501 5.501 20 Si 0.765 3.235 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.193 4.193 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.224 0.776 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.235 0.765 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.143 0.857 40 H 0.079 0.921 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.005 17.636 -9.250 22.753 hybrid contribution 0.234 0.274 0.045 0.363 sum -10.771 17.910 -9.205 22.837 Atomic orbital electron populations 1.22430 0.94744 1.03397 1.02937 1.21456 0.93353 0.91545 0.86313 1.22505 1.02324 0.95958 1.02928 1.86638 1.77022 1.56962 1.15530 1.21268 0.81083 1.01436 0.95169 1.45968 1.07063 1.58368 1.27345 1.20766 0.90114 0.78167 0.81062 1.90757 1.70091 1.40466 1.38228 1.20582 0.91486 1.02272 0.98995 1.18666 0.98269 0.93044 0.93313 1.20341 1.09115 0.98951 0.93143 1.20668 0.97499 0.94065 0.97129 1.21164 1.10078 0.95152 0.98668 1.19275 0.92561 0.85107 0.92904 1.83978 1.68824 1.16890 1.38683 1.21268 1.39119 0.96601 0.89719 0.89205 1.25267 0.97122 0.95493 0.98665 1.70032 1.43935 1.09540 1.26548 0.85795 0.79359 0.78277 0.80056 1.19554 1.20339 1.19559 1.19957 1.08427 0.93515 0.97431 0.91176 0.91821 0.91270 0.91584 0.92000 0.91165 0.77614 0.90802 0.90295 0.76474 0.88488 0.88248 0.87983 0.87520 0.85654 0.92082 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 8.82 37.16 0.33 -0.70 16 2 C 0.11 0.82 1.07 -90.62 -0.10 0.72 16 3 C -0.18 -0.98 8.59 37.16 0.32 -0.66 16 4 O -0.56 -4.39 12.93 -35.23 -0.46 -4.84 16 5 C 0.13 1.43 4.84 -4.04 -0.02 1.41 16 6 N -0.73 -8.32 5.19 -60.29 -0.31 -8.63 16 7 C 0.51 7.89 7.82 -10.98 -0.09 7.81 16 8 O -0.52 -10.64 16.03 5.56 0.09 -10.55 16 9 C -0.09 -1.32 5.83 -29.03 -0.17 -1.49 16 10 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 11 C -0.20 -3.68 9.70 -39.53 -0.38 -4.07 16 12 C -0.08 -1.50 10.04 -39.61 -0.40 -1.90 16 13 C -0.23 -5.39 9.17 -39.40 -0.36 -5.75 16 14 C 0.15 4.00 6.65 -39.11 -0.26 3.74 16 15 O -0.18 -5.40 9.76 0.05 0.00 -5.40 16 16 C -0.39 -11.39 9.49 30.89 0.29 -11.09 16 17 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.87 -26.22 13.67 55.48 0.76 -25.47 16 20 Si 0.94 21.22 29.55 -169.99 -5.02 16.19 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.17 -3.98 9.65 -39.39 -0.38 -4.36 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.37 6.57 -51.93 -0.34 0.03 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.38 1.43 9.05 45.56 0.41 1.84 16 32 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.49 6.99 -40.82 -0.29 3.20 16 35 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.11 2.54 8.06 -52.49 -0.42 2.11 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -36.52 349.07 -6.44 -42.96 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.99 Total: 6.89 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.77 Total: -16.41 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.45 Total: -34.10 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.37 Total: -20.80 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.52 -6.44 -42.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089840788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.166 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds