Wall clock time and date at job start Tue Mar 31 2020 07:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46959 * 2 1 4 4 O 1.42896 * 109.46854 * 240.00056 * 2 1 3 5 5 C 1.52996 * 109.47086 * 119.99632 * 2 1 3 6 6 N 1.46500 * 109.47128 * 184.99967 * 5 2 1 7 7 C 1.34774 * 120.00119 * 180.02562 * 6 5 2 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47063 * 60.00398 * 20 18 16 22 22 H 1.48498 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47319 * 300.00306 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 H 1.08997 * 109.47430 * 300.00057 * 1 2 3 26 26 H 1.09001 * 109.47233 * 60.00151 * 1 2 3 27 27 H 1.08998 * 109.46962 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47093 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47025 * 299.99977 * 3 2 1 30 30 H 1.08997 * 109.47096 * 59.99739 * 3 2 1 31 31 H 0.96699 * 114.00614 * 60.00404 * 4 2 1 32 32 H 1.09008 * 109.46644 * 65.00292 * 5 2 1 33 33 H 1.08998 * 109.47635 * 305.00488 * 5 2 1 34 34 H 0.97001 * 119.99420 * 0.02562 * 6 5 2 35 35 H 1.09002 * 109.46571 * 59.99894 * 9 7 6 36 36 H 1.08992 * 109.46782 * 300.00158 * 9 7 6 37 37 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 38 38 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 40 40 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 7 3.5000 -0.6178 1.3110 7 6 4.1731 -1.1833 2.3325 8 8 3.5701 -1.7782 3.2005 9 6 5.6750 -1.0765 2.3963 10 6 6.1774 -1.7880 3.6261 11 6 6.3093 -1.0983 4.8179 12 6 6.7705 -1.7475 5.9483 13 6 7.0948 -3.0889 5.8921 14 6 6.9690 -3.7826 4.6960 15 8 7.2927 -5.0996 4.6361 16 6 7.8435 -5.6453 5.7392 17 1 7.9339 -5.0611 6.6430 18 6 8.2938 -6.9564 5.7130 19 7 8.1841 -7.6678 4.6119 20 14 9.0576 -7.7122 7.2411 21 1 8.0691 -7.6945 8.3491 22 1 9.4551 -9.1139 6.9542 23 1 10.2563 -6.9289 7.6345 24 6 6.5061 -3.1275 3.5619 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.7210 -0.2701 -1.9980 32 1 1.7516 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.9823 -0.1423 0.6165 35 1 5.9629 -0.0261 2.4406 36 1 6.1098 -1.5353 1.5084 37 1 6.0514 -0.0506 4.8655 38 1 6.8727 -1.2062 6.8772 39 1 7.4501 -3.5966 6.7767 40 1 8.4995 -8.5849 4.5936 41 1 6.4036 -3.6652 2.6310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089840788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:23 Heat of formation + Delta-G solvation = -126.817270 kcal Electronic energy + Delta-G solvation = -22723.744281 eV Core-core repulsion = 19181.944538 eV Total energy + Delta-G solvation = -3541.799743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.18996 -40.49956 -39.21515 -38.13474 -35.45584 -34.34475 -33.57337 -32.80794 -30.89592 -29.01955 -28.29209 -27.39248 -26.60400 -23.29146 -22.78579 -21.60803 -21.30015 -19.50825 -18.81887 -18.08094 -17.68921 -17.09924 -16.82820 -16.60505 -16.12352 -16.07016 -15.63275 -15.47929 -15.14383 -14.80923 -14.55502 -14.35328 -14.00528 -13.94928 -13.85057 -13.55648 -13.08060 -12.95347 -12.76295 -12.67726 -12.54681 -12.45905 -12.39253 -12.21834 -12.12618 -11.77771 -11.20793 -11.05813 -10.90435 -10.78394 -10.10069 -9.63498 -8.97489 -8.46690 -6.15624 0.52342 0.76398 1.33646 1.45404 1.50746 1.67372 2.17950 2.23709 2.85717 3.18019 3.21275 3.44619 3.71603 3.81146 3.92293 4.01451 4.10671 4.14632 4.32178 4.43041 4.53964 4.58749 4.64365 4.68364 4.74068 4.74269 4.85685 4.89681 5.07764 5.10017 5.12905 5.19136 5.30935 5.34329 5.45409 5.65534 5.73215 5.75819 6.02933 6.24164 6.57459 6.89835 6.97466 7.30264 7.79500 8.76900 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028020 B = 0.002803 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.057118 B = 9985.130162 C =10536.086784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.121 3.879 3 C -0.175 4.175 4 O -0.576 6.576 5 C 0.127 3.873 6 N -0.711 5.711 7 C 0.511 3.489 8 O -0.582 6.582 9 C -0.091 4.091 10 C -0.026 4.026 11 C -0.179 4.179 12 C -0.073 4.073 13 C -0.247 4.247 14 C 0.112 3.888 15 O -0.235 6.235 16 C -0.416 4.416 17 H 0.101 0.899 18 C -0.025 4.025 19 N -0.923 5.923 20 Si 1.021 2.979 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.195 4.195 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.395 0.605 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.416 0.584 35 H 0.147 0.853 36 H 0.118 0.882 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.119 0.881 40 H 0.273 0.727 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.127 22.747 -10.113 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.081 3.919 3 C -0.233 4.233 4 O -0.386 6.386 5 C 0.003 3.997 6 N -0.365 5.365 7 C 0.299 3.701 8 O -0.461 6.461 9 C -0.130 4.130 10 C -0.027 4.027 11 C -0.198 4.198 12 C -0.091 4.091 13 C -0.266 4.266 14 C 0.062 3.938 15 O -0.142 6.142 16 C -0.492 4.492 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.562 5.562 20 Si 0.840 3.160 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.214 4.214 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.246 0.754 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.255 0.745 35 H 0.164 0.836 36 H 0.136 0.864 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.282 21.589 -9.331 26.086 hybrid contribution 0.163 -0.608 -0.091 0.636 sum -11.119 20.981 -9.422 25.546 Atomic orbital electron populations 1.22423 0.93729 1.02871 1.04306 1.21359 0.93972 0.91977 0.84622 1.22472 1.02322 0.94391 1.04105 1.86584 1.77417 1.57910 1.16643 1.21392 0.80528 1.00256 0.97486 1.45805 1.07528 1.56793 1.26383 1.20973 0.90600 0.77521 0.81033 1.90747 1.71253 1.43340 1.40750 1.20698 0.90446 1.04643 0.97209 1.19203 0.96012 0.91555 0.95912 1.20984 1.05775 1.00995 0.92029 1.21145 0.95918 0.92597 0.99438 1.21303 1.10922 0.96882 0.97529 1.19872 0.94322 0.84540 0.95100 1.83937 1.71368 1.19290 1.39650 1.21806 1.39654 0.97480 0.90236 0.88200 1.26642 0.97351 0.95575 1.02621 1.70189 1.46319 1.10158 1.29505 0.84625 0.78758 0.77397 0.75247 1.18304 1.19457 1.17908 1.20224 1.09345 0.95414 0.96446 0.90642 0.89621 0.92783 0.91523 0.89946 0.90928 0.75439 0.93839 0.90227 0.74543 0.83573 0.86403 0.83304 0.83524 0.86365 0.91836 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 8.82 71.98 0.63 -1.08 16 2 C 0.12 1.49 1.07 -10.79 -0.01 1.48 16 3 C -0.18 -1.31 8.59 71.98 0.62 -0.69 16 4 O -0.58 -7.93 12.93 -148.98 -1.93 -9.86 16 5 C 0.13 2.60 4.84 86.38 0.42 3.02 16 6 N -0.71 -14.69 5.19 -463.06 -2.40 -17.09 16 7 C 0.51 14.87 7.82 87.66 0.69 15.55 16 8 O -0.58 -23.73 16.03 -3.04 -0.05 -23.78 16 9 C -0.09 -2.26 5.83 29.10 0.17 -2.09 16 10 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 11 C -0.18 -6.08 9.70 22.30 0.22 -5.86 16 12 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 13 C -0.25 -11.72 9.17 22.39 0.21 -11.51 16 14 C 0.11 6.07 6.65 22.58 0.15 6.22 16 15 O -0.24 -15.19 9.76 -22.74 -0.22 -15.41 16 16 C -0.42 -25.62 9.49 67.92 0.64 -24.97 16 17 H 0.10 5.65 5.21 -2.91 -0.02 5.64 16 18 C -0.02 -1.48 5.49 84.83 0.47 -1.02 16 19 N -0.92 -59.16 13.67 21.61 0.30 -58.86 16 20 Si 1.02 44.72 29.55 68.60 2.03 46.75 16 21 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 24 C -0.19 -9.21 9.65 22.39 0.22 -8.99 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.49 6.57 -2.39 -0.02 0.48 16 29 H 0.08 0.31 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.40 1.96 9.05 -74.06 -0.67 1.29 16 32 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.42 5.91 6.99 -92.71 -0.65 5.27 16 35 H 0.15 2.26 8.09 -2.39 -0.02 2.24 16 36 H 0.12 2.57 8.08 -2.39 -0.02 2.55 16 37 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 38 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 39 H 0.12 5.63 5.64 -2.91 -0.02 5.61 16 40 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 41 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -87.58 349.07 2.01 -85.57 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -0.26 Total: 26.18 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 4.55 Total: -33.49 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -2.11 Total: -75.95 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -2.20 Total: -49.05 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -87.58 2.01 -85.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089840788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.252 kcal (2) G-P(sol) polarization free energy of solvation -87.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds