Wall clock time and date at job start Tue Mar 31 2020 06:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36001 * 117.00035 * 2 1 4 4 C 1.38474 * 120.00593 * 0.02562 * 3 2 1 5 5 C 1.38492 * 120.33843 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.83242 * 179.97438 * 5 4 3 7 7 C 1.37792 * 120.34256 * 359.97438 * 5 4 3 8 8 C 1.39755 * 120.00316 * 0.02562 * 7 5 4 9 9 C 1.47547 * 120.16890 * 180.02562 * 8 7 5 10 10 O 1.21586 * 120.00231 * 130.72358 * 9 8 7 11 11 N 1.34781 * 120.00171 * 310.73391 * 9 8 7 12 12 C 1.46499 * 119.99549 * 4.44530 * 11 9 8 13 13 C 1.46493 * 119.99961 * 184.45136 * 11 9 8 14 14 H 1.09002 * 109.47529 * 359.97438 * 13 11 9 15 15 C 1.53001 * 109.47159 * 119.99869 * 13 11 9 16 16 C 1.50696 * 109.46999 * 239.99352 * 13 11 9 17 17 H 1.07996 * 120.00358 * 0.02562 * 16 13 11 18 18 C 1.37880 * 120.00029 * 180.02562 * 16 13 11 19 19 N 1.31512 * 120.00309 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00178 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47270 * 59.99689 * 20 18 16 22 22 H 1.48494 * 109.47245 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46895 * 299.99996 * 20 18 16 24 24 C 1.39145 * 120.00668 * 179.97438 * 3 2 1 25 25 O 1.35745 * 120.16717 * 0.02562 * 24 3 2 26 26 H 1.09001 * 109.46812 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46883 * 299.99671 * 1 2 3 28 28 H 1.08995 * 109.47333 * 59.99354 * 1 2 3 29 29 H 1.08001 * 119.82981 * 359.69694 * 4 3 2 30 30 H 1.08995 * 109.47643 * 89.99289 * 6 5 4 31 31 H 1.08997 * 109.47410 * 210.00153 * 6 5 4 32 32 H 1.09005 * 109.46393 * 329.99420 * 6 5 4 33 33 H 1.07999 * 119.99794 * 179.97438 * 7 5 4 34 34 H 1.09002 * 109.47173 * 93.11893 * 12 11 9 35 35 H 1.09004 * 109.46904 * 213.11356 * 12 11 9 36 36 H 1.08998 * 109.47292 * 333.11504 * 12 11 9 37 37 H 1.08999 * 109.47557 * 179.97438 * 15 13 11 38 38 H 1.09006 * 109.47158 * 299.99713 * 15 13 11 39 39 H 1.09003 * 109.47357 * 59.99418 * 15 13 11 40 40 H 0.97001 * 120.00389 * 179.97438 * 19 18 16 41 41 H 0.96698 * 114.00340 * 89.99406 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2924 2.3732 0.0005 5 6 1.9139 3.6108 0.0011 6 6 1.0822 4.8675 0.0011 7 6 3.2890 3.6991 0.0016 8 6 4.0640 2.5361 0.0011 9 6 5.5367 2.6264 0.0022 10 8 6.1850 1.9772 0.8001 11 7 6.1634 3.4287 -0.8810 12 6 5.3810 4.2844 -1.7765 13 6 7.6268 3.4450 -0.9456 14 1 8.0308 2.7496 -0.2099 15 6 8.0802 3.0270 -2.3459 16 6 8.1272 4.8353 -0.6499 17 1 7.4254 5.6275 -0.4348 18 6 9.4811 5.0961 -0.6538 19 7 10.3359 4.1316 -0.9161 20 14 10.1016 6.8194 -0.2864 21 1 9.6621 7.2244 1.0730 22 1 11.5849 6.8362 -0.3532 23 1 9.5507 7.7677 -1.2877 24 6 3.4360 1.2848 0.0005 25 8 4.1787 0.1485 0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.2140 2.3136 -0.0040 30 1 0.8811 5.1702 1.0287 31 1 1.6239 5.6618 -0.5124 32 1 0.1397 4.6792 -0.5133 33 1 3.7679 4.6671 0.0016 34 1 5.2566 5.2676 -1.3227 35 1 5.9022 4.3869 -2.7284 36 1 4.4022 3.8354 -1.9448 37 1 9.1690 3.0395 -2.3941 38 1 7.7182 2.0213 -2.5599 39 1 7.6762 3.7227 -3.0814 40 1 11.2883 4.3151 -0.9192 41 1 4.3942 -0.1805 -0.8828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094107603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:26 Heat of formation + Delta-G solvation = -82.354398 kcal Electronic energy + Delta-G solvation = -24087.989472 eV Core-core repulsion = 20548.117784 eV Total energy + Delta-G solvation = -3539.871688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66848 -39.04012 -37.44749 -36.85412 -35.23762 -32.95185 -31.78871 -30.62364 -28.93959 -27.94938 -26.43965 -25.90774 -25.20800 -23.62644 -21.92012 -20.70965 -18.93475 -18.02242 -17.40799 -16.79254 -16.50074 -16.11128 -15.66544 -15.33110 -15.20181 -14.42096 -14.37028 -14.05394 -13.78885 -13.65324 -13.17594 -12.85765 -12.63078 -12.38923 -12.17677 -12.05089 -11.92640 -11.56728 -11.53687 -11.36717 -11.04837 -10.82108 -10.77181 -10.71242 -10.55860 -10.25602 -10.14663 -9.17318 -9.03490 -8.67006 -8.40603 -8.09975 -7.57445 -6.05312 -4.13348 0.96886 1.28322 2.98906 3.26908 3.29370 3.34508 3.36812 3.73728 3.97559 4.23868 4.41372 4.60275 4.82776 4.86279 4.92824 5.01070 5.19880 5.25163 5.25751 5.33959 5.46382 5.51079 5.62845 5.75776 5.89372 6.01118 6.07088 6.23327 6.29752 6.43069 6.55295 6.76887 6.82857 7.05685 7.13981 7.44143 7.52854 7.72453 7.86741 8.02641 8.20567 8.51462 8.84371 9.04823 9.52898 11.00001 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.004210 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.557902 B = 6649.086885 C = 7361.849936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.097 3.903 4 C -0.187 4.187 5 C -0.065 4.065 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.098 4.098 9 C 0.546 3.454 10 O -0.526 6.526 11 N -0.586 5.586 12 C 0.083 3.917 13 C 0.258 3.742 14 H 0.064 0.936 15 C -0.147 4.147 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.115 3.885 25 O -0.469 6.469 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.132 0.868 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.137 0.863 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.011 0.989 39 H 0.030 0.970 40 H 0.264 0.736 41 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.024 -2.044 -3.168 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.051 3.949 4 C -0.205 4.205 5 C -0.065 4.065 6 C -0.169 4.169 7 C -0.130 4.130 8 C -0.102 4.102 9 C 0.331 3.669 10 O -0.404 6.404 11 N -0.317 5.317 12 C -0.061 4.061 13 C 0.159 3.841 14 H 0.082 0.918 15 C -0.205 4.205 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 C 0.068 3.932 25 O -0.278 6.278 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.155 0.845 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.030 0.970 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -20.377 -2.562 -2.170 20.651 hybrid contribution 0.097 1.092 -0.365 1.156 sum -20.279 -1.470 -2.535 20.490 Atomic orbital electron populations 1.23063 0.78736 1.03889 1.01201 1.86165 1.20957 1.26067 1.88833 1.19244 0.91299 0.84920 0.99396 1.21039 0.99789 0.91308 1.08413 1.19588 0.93551 0.94664 0.98715 1.20787 0.98989 0.94512 1.02597 1.21162 0.92686 0.97975 1.01130 1.20428 0.95255 0.92602 1.01887 1.17946 0.85802 0.80903 0.82201 1.90790 1.66309 1.45036 1.38228 1.48181 1.09416 1.39266 1.34863 1.21742 0.95011 0.94336 0.95030 1.18968 0.72227 0.97953 0.94999 0.91785 1.22101 1.04758 0.96025 0.97647 1.21265 0.91937 0.94670 1.48516 0.92320 1.24889 0.96621 0.97311 0.94931 1.69864 1.02397 1.31774 1.48587 0.86549 0.77636 0.84239 0.78914 1.20233 1.21178 1.20254 1.17612 0.85890 0.85955 1.03703 1.84898 1.71594 1.38610 1.32673 0.88254 0.92701 0.92753 0.85058 0.90910 0.90960 0.91586 0.84488 0.93119 0.91085 0.92419 0.88690 0.96971 0.95063 0.92618 0.75941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.95 10.28 -34.29 -0.35 -4.30 16 3 C 0.10 1.36 6.70 -39.16 -0.26 1.10 16 4 C -0.19 -2.15 8.68 -39.40 -0.34 -2.49 16 5 C -0.06 -0.76 5.87 -104.69 -0.61 -1.38 16 6 C -0.11 -0.93 10.00 36.01 0.36 -0.57 16 7 C -0.11 -1.61 7.25 -39.18 -0.28 -1.89 16 8 C -0.10 -1.74 4.90 -104.87 -0.51 -2.26 16 9 C 0.55 12.15 6.94 -12.46 -0.09 12.06 16 10 O -0.53 -14.07 15.88 -3.87 -0.06 -14.13 16 11 N -0.59 -12.81 2.75 -176.49 -0.49 -13.30 16 12 C 0.08 1.41 8.36 59.85 0.50 1.91 16 13 C 0.26 6.69 2.63 -69.09 -0.18 6.50 16 14 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 15 C -0.15 -3.51 8.94 37.16 0.33 -3.18 16 16 C -0.53 -14.30 8.37 -34.44 -0.29 -14.59 16 17 H 0.06 1.56 7.56 -52.49 -0.40 1.17 16 18 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 20 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 C 0.12 1.95 6.71 -38.58 -0.26 1.69 16 25 O -0.47 -8.25 12.34 -41.86 -0.52 -8.77 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 28 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 29 H 0.13 1.11 6.27 -52.49 -0.33 0.78 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.14 1.91 6.58 -52.49 -0.35 1.56 16 34 H 0.05 0.82 7.48 -51.93 -0.39 0.43 16 35 H 0.07 1.21 6.44 -51.93 -0.33 0.87 16 36 H 0.06 0.83 5.68 -51.93 -0.29 0.53 16 37 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.03 0.68 6.68 -51.93 -0.35 0.34 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.38 5.07 9.06 45.56 0.41 5.48 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -34.37 336.81 -6.21 -40.58 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.73 Total: 3.58 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -0.74 Total: -0.21 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.14 Total: -37.94 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.93 Total: -27.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.37 -6.21 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.775 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds