Wall clock time and date at job start Tue Mar 31 2020 06:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36001 * 117.00035 * 2 1 4 4 C 1.38474 * 120.00593 * 0.02562 * 3 2 1 5 5 C 1.38492 * 120.33843 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.83242 * 179.97438 * 5 4 3 7 7 C 1.37792 * 120.34256 * 359.97438 * 5 4 3 8 8 C 1.39755 * 120.00316 * 0.02562 * 7 5 4 9 9 C 1.47547 * 120.16890 * 180.02562 * 8 7 5 10 10 O 1.21586 * 120.00231 * 130.72358 * 9 8 7 11 11 N 1.34781 * 120.00171 * 310.73391 * 9 8 7 12 12 C 1.46499 * 119.99549 * 4.44530 * 11 9 8 13 13 C 1.46493 * 119.99961 * 184.45136 * 11 9 8 14 14 H 1.09002 * 109.47529 * 359.97438 * 13 11 9 15 15 C 1.53001 * 109.47159 * 119.99869 * 13 11 9 16 16 C 1.50696 * 109.46999 * 239.99352 * 13 11 9 17 17 H 1.07996 * 120.00358 * 0.02562 * 16 13 11 18 18 C 1.37880 * 120.00029 * 180.02562 * 16 13 11 19 19 N 1.31512 * 120.00309 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00178 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47270 * 59.99689 * 20 18 16 22 22 H 1.48494 * 109.47245 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46895 * 299.99996 * 20 18 16 24 24 C 1.39145 * 120.00668 * 179.97438 * 3 2 1 25 25 O 1.35745 * 120.16717 * 0.02562 * 24 3 2 26 26 H 1.09001 * 109.46812 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46883 * 299.99671 * 1 2 3 28 28 H 1.08995 * 109.47333 * 59.99354 * 1 2 3 29 29 H 1.08001 * 119.82981 * 359.69694 * 4 3 2 30 30 H 1.08995 * 109.47643 * 89.99289 * 6 5 4 31 31 H 1.08997 * 109.47410 * 210.00153 * 6 5 4 32 32 H 1.09005 * 109.46393 * 329.99420 * 6 5 4 33 33 H 1.07999 * 119.99794 * 179.97438 * 7 5 4 34 34 H 1.09002 * 109.47173 * 93.11893 * 12 11 9 35 35 H 1.09004 * 109.46904 * 213.11356 * 12 11 9 36 36 H 1.08998 * 109.47292 * 333.11504 * 12 11 9 37 37 H 1.08999 * 109.47557 * 179.97438 * 15 13 11 38 38 H 1.09006 * 109.47158 * 299.99713 * 15 13 11 39 39 H 1.09003 * 109.47357 * 59.99418 * 15 13 11 40 40 H 0.97001 * 120.00389 * 179.97438 * 19 18 16 41 41 H 0.96698 * 114.00340 * 89.99406 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2924 2.3732 0.0005 5 6 1.9139 3.6108 0.0011 6 6 1.0822 4.8675 0.0011 7 6 3.2890 3.6991 0.0016 8 6 4.0640 2.5361 0.0011 9 6 5.5367 2.6264 0.0022 10 8 6.1850 1.9772 0.8001 11 7 6.1634 3.4287 -0.8810 12 6 5.3810 4.2844 -1.7765 13 6 7.6268 3.4450 -0.9456 14 1 8.0308 2.7496 -0.2099 15 6 8.0802 3.0270 -2.3459 16 6 8.1272 4.8353 -0.6499 17 1 7.4254 5.6275 -0.4348 18 6 9.4811 5.0961 -0.6538 19 7 10.3359 4.1316 -0.9161 20 14 10.1016 6.8194 -0.2864 21 1 9.6621 7.2244 1.0730 22 1 11.5849 6.8362 -0.3532 23 1 9.5507 7.7677 -1.2877 24 6 3.4360 1.2848 0.0005 25 8 4.1787 0.1485 0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.2140 2.3136 -0.0040 30 1 0.8811 5.1702 1.0287 31 1 1.6239 5.6618 -0.5124 32 1 0.1397 4.6792 -0.5133 33 1 3.7679 4.6671 0.0016 34 1 5.2566 5.2676 -1.3227 35 1 5.9022 4.3869 -2.7284 36 1 4.4022 3.8354 -1.9448 37 1 9.1690 3.0395 -2.3941 38 1 7.7182 2.0213 -2.5599 39 1 7.6762 3.7227 -3.0814 40 1 11.2883 4.3151 -0.9192 41 1 4.3942 -0.1805 -0.8828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094107603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:25 Heat of formation + Delta-G solvation = -106.582149 kcal Electronic energy + Delta-G solvation = -24089.040066 eV Core-core repulsion = 20548.117784 eV Total energy + Delta-G solvation = -3540.922282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.84599 -40.47607 -38.64250 -37.99968 -37.10454 -34.86492 -32.97046 -31.91815 -30.58026 -28.62465 -27.83873 -27.32242 -26.92594 -25.03399 -23.01460 -22.29329 -20.37848 -19.37761 -18.62187 -18.39820 -17.94008 -17.40323 -17.07205 -16.86237 -16.27394 -16.18932 -15.79815 -15.16301 -14.89391 -14.74949 -14.47093 -14.39161 -14.01407 -13.66599 -13.49311 -13.18896 -13.12776 -12.93409 -12.78840 -12.73840 -12.67674 -12.59863 -12.21532 -12.18295 -12.12115 -11.80935 -11.73064 -11.20464 -10.76295 -10.51242 -9.79984 -9.38190 -9.12865 -8.14509 -6.31677 -0.17981 0.22917 1.41707 1.44821 1.52074 1.71348 2.08972 2.39030 2.46118 2.58041 3.13270 3.14144 3.54719 3.77385 4.06036 4.12119 4.30065 4.37191 4.41781 4.43189 4.56928 4.65938 4.72839 4.76527 4.81466 4.86364 4.91715 4.97620 4.99138 5.02989 5.12581 5.23102 5.43470 5.48210 5.57342 5.64797 5.65481 6.01375 6.14192 6.25393 6.72385 6.74739 6.76680 7.26019 7.43217 8.89939 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.004210 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.557902 B = 6649.086885 C = 7361.849936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.099 3.901 4 C -0.169 4.169 5 C -0.051 4.051 6 C -0.112 4.112 7 C -0.116 4.116 8 C -0.122 4.122 9 C 0.541 3.459 10 O -0.590 6.590 11 N -0.589 5.589 12 C 0.082 3.918 13 C 0.261 3.739 14 H 0.006 0.994 15 C -0.132 4.132 16 C -0.540 4.540 17 H 0.062 0.938 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.967 3.033 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.259 1.259 24 C 0.085 3.915 25 O -0.495 6.495 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.173 0.827 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.141 0.859 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.020 0.980 39 H 0.051 0.949 40 H 0.265 0.735 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.820 0.086 -4.018 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.053 3.947 4 C -0.188 4.188 5 C -0.051 4.051 6 C -0.168 4.168 7 C -0.135 4.135 8 C -0.125 4.125 9 C 0.329 3.671 10 O -0.471 6.471 11 N -0.319 5.319 12 C -0.060 4.060 13 C 0.160 3.840 14 H 0.024 0.976 15 C -0.190 4.190 16 C -0.578 4.578 17 H 0.080 0.920 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.792 3.208 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.184 1.184 24 C 0.039 3.961 25 O -0.306 6.306 26 H 0.135 0.865 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.190 0.810 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.158 0.842 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -24.223 -0.412 -3.062 24.419 hybrid contribution 1.131 0.350 -0.088 1.187 sum -23.092 -0.062 -3.150 23.306 Atomic orbital electron populations 1.23455 0.75902 1.05816 1.02809 1.86147 1.23862 1.25721 1.88573 1.19222 0.90290 0.86386 0.98818 1.21496 1.01622 0.90020 1.05644 1.19992 0.92512 0.96490 0.96081 1.20906 0.99499 0.92596 1.03793 1.21255 0.93950 0.96735 1.01541 1.20079 0.92220 0.94542 1.05707 1.18683 0.87882 0.79550 0.80950 1.90734 1.68287 1.47426 1.40699 1.48154 1.08255 1.39940 1.35552 1.21979 0.95770 0.94258 0.94036 1.18593 0.74875 0.96260 0.94321 0.97583 1.21880 1.03103 0.97011 0.97041 1.21528 0.92456 0.95085 1.48760 0.91958 1.25767 0.96786 1.01367 0.94585 1.70018 1.02614 1.33863 1.49206 0.85476 0.77021 0.79508 0.78812 1.20348 1.20913 1.18369 1.17888 0.87402 0.85196 1.05630 1.84845 1.72348 1.39353 1.34026 0.86491 0.91343 0.90637 0.80968 0.89812 0.90212 0.88887 0.84171 0.91922 0.90863 0.89370 0.91145 0.96129 0.93054 0.92590 0.74777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -7.85 10.28 -79.66 -0.82 -8.67 16 3 C 0.10 2.60 6.70 22.54 0.15 2.76 16 4 C -0.17 -3.21 8.68 22.39 0.19 -3.02 16 5 C -0.05 -1.00 5.87 -19.91 -0.12 -1.11 16 6 C -0.11 -1.27 10.00 71.24 0.71 -0.56 16 7 C -0.12 -3.18 7.25 22.53 0.16 -3.02 16 8 C -0.12 -4.40 4.90 -20.03 -0.10 -4.50 16 9 C 0.54 25.40 6.94 86.70 0.60 26.00 16 10 O -0.59 -34.13 15.88 4.77 0.08 -34.06 16 11 N -0.59 -26.63 2.75 -830.56 -2.29 -28.92 16 12 C 0.08 2.71 8.36 127.77 1.07 3.78 16 13 C 0.26 14.18 2.63 44.25 0.12 14.30 16 14 H 0.01 0.40 6.91 -2.39 -0.02 0.39 16 15 C -0.13 -6.52 8.94 71.98 0.64 -5.88 16 16 C -0.54 -30.07 8.37 25.60 0.21 -29.85 16 17 H 0.06 3.33 7.56 -2.91 -0.02 3.31 16 18 C 0.01 0.81 5.30 84.66 0.45 1.26 16 19 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 20 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 24 C 0.09 2.93 6.71 22.92 0.15 3.09 16 25 O -0.50 -18.54 12.34 -68.78 -0.85 -19.39 16 26 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 28 H 0.08 0.59 7.65 -2.39 -0.02 0.57 16 29 H 0.17 1.84 6.27 -2.91 -0.02 1.82 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 32 H 0.09 0.62 8.08 -2.38 -0.02 0.61 16 33 H 0.14 3.66 6.58 -2.91 -0.02 3.64 16 34 H 0.06 1.93 7.48 -2.39 -0.02 1.92 16 35 H 0.07 2.39 6.44 -2.38 -0.02 2.38 16 36 H 0.09 2.39 5.68 -2.39 -0.01 2.38 16 37 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 38 H 0.02 0.92 8.14 -2.38 -0.02 0.91 16 39 H 0.05 2.27 6.68 -2.39 -0.02 2.25 16 40 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.40 11.44 9.06 -74.06 -0.67 10.77 16 Total: -1.00 -80.64 336.81 4.15 -76.49 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.39 Total: 18.19 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.37 Total: 4.52 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -2.04 Total: -82.63 kcal Atomic # 8 Polarization: -60.52 SS G_CDS: -1.59 Total: -62.11 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -80.64 4.15 -76.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.091 kcal (2) G-P(sol) polarization free energy of solvation -80.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds