Wall clock time and date at job start Tue Mar 31 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99986 * 2 1 4 4 C 1.53001 * 109.47083 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46916 * 65.00140 * 4 3 2 6 6 C 1.46493 * 120.00044 * 283.17919 * 5 4 3 7 7 C 1.50696 * 109.47551 * 269.99556 * 6 5 4 8 8 H 1.08000 * 119.99654 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00721 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99478 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00564 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47184 * 59.99401 * 11 9 7 13 13 H 1.48499 * 109.47310 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46637 * 300.00013 * 11 9 7 15 15 C 1.34780 * 119.99648 * 103.17744 * 5 4 3 16 16 O 1.21588 * 119.99610 * 186.92494 * 15 5 4 17 17 C 1.47532 * 120.00138 * 6.92292 * 15 5 4 18 18 C 1.39713 * 120.18982 * 326.48503 * 17 15 5 19 19 C 1.37796 * 119.90697 * 180.25565 * 18 17 15 20 20 C 1.38551 * 120.29500 * 359.47103 * 19 18 17 21 21 C 1.38053 * 120.39372 * 0.25467 * 20 19 18 22 22 C 1.50699 * 119.95626 * 179.97438 * 21 20 19 23 23 C 1.38712 * 120.08439 * 0.02562 * 21 20 19 24 24 O 1.35647 * 120.15151 * 179.97438 * 23 21 20 25 25 H 1.09002 * 109.47235 * 299.99854 * 1 2 3 26 26 H 1.08996 * 109.47127 * 59.99544 * 1 2 3 27 27 H 1.09004 * 109.47487 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46741 * 60.00852 * 3 2 1 29 29 H 1.08993 * 109.47729 * 300.00304 * 3 2 1 30 30 H 1.09000 * 109.47127 * 305.01094 * 4 3 2 31 31 H 1.08992 * 109.47673 * 185.00278 * 4 3 2 32 32 H 1.08996 * 109.47495 * 30.00209 * 6 5 4 33 33 H 1.09012 * 109.47108 * 149.99699 * 6 5 4 34 34 H 0.97005 * 119.99932 * 180.02562 * 10 9 7 35 35 H 1.07997 * 120.04640 * 359.97438 * 18 17 15 36 36 H 1.07998 * 119.85028 * 179.74894 * 19 18 17 37 37 H 1.07998 * 119.80046 * 180.28080 * 20 19 18 38 38 H 1.09000 * 109.46606 * 90.00581 * 22 21 20 39 39 H 1.08996 * 109.47081 * 209.99679 * 22 21 20 40 40 H 1.08998 * 109.47568 * 330.00744 * 22 21 20 41 41 H 0.96699 * 114.00288 * 89.99430 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 3.8336 -0.8814 -1.4420 7 6 5.0767 -1.5785 -0.9523 8 1 5.8917 -1.0024 -0.5396 9 6 5.1737 -2.9515 -1.0311 10 7 4.1814 -3.6529 -1.5342 11 14 6.7143 -3.8155 -0.4234 12 1 6.9086 -3.5243 1.0197 13 1 6.5693 -5.2806 -0.6172 14 1 7.8897 -3.3283 -1.1892 15 6 4.5141 1.3228 -2.2266 16 8 4.7639 0.8319 -3.3105 17 6 4.7993 2.7490 -1.9792 18 6 3.9724 3.4948 -1.1354 19 6 4.2412 4.8278 -0.9127 20 6 5.3348 5.4302 -1.5133 21 6 6.1633 4.7035 -2.3448 22 6 7.3498 5.3687 -2.9934 23 6 5.9044 3.3620 -2.5848 24 8 6.7173 2.6468 -3.4020 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5683 0.8426 31 1 3.9785 2.1764 0.0903 32 1 2.9711 -1.2387 -0.8794 33 1 3.6904 -1.0955 -2.5013 34 1 4.2495 -4.6190 -1.5893 35 1 3.1212 3.0283 -0.6620 36 1 3.5990 5.4044 -0.2635 37 1 5.5405 6.4743 -1.3296 38 1 8.2199 5.2729 -2.3440 39 1 7.5564 4.8900 -3.9505 40 1 7.1313 6.4243 -3.1547 41 1 7.4550 2.2187 -2.9464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103428024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:32 Heat of formation + Delta-G solvation = -96.448396 kcal Electronic energy + Delta-G solvation = -24290.337598 eV Core-core repulsion = 20749.854748 eV Total energy + Delta-G solvation = -3540.482850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72927 -39.84459 -38.79155 -37.75116 -36.47863 -34.98216 -33.67084 -31.31603 -31.14129 -29.01995 -27.82967 -27.05666 -25.61251 -24.19902 -23.37566 -22.65171 -20.47615 -19.23430 -18.63737 -18.08040 -17.69511 -17.30752 -16.83713 -16.63714 -16.59496 -16.00726 -15.91776 -15.38497 -15.26128 -14.87356 -14.40353 -14.23199 -14.09256 -13.64912 -13.39102 -13.17588 -13.09012 -13.04016 -12.92812 -12.76708 -12.58023 -12.51325 -12.22095 -12.14517 -11.87223 -11.72273 -11.54558 -10.65047 -10.59381 -10.50059 -9.81710 -9.52015 -9.37203 -8.18918 -6.34070 -0.08279 0.24672 1.34570 1.39807 1.47049 1.88842 2.26609 2.43164 2.68366 2.90819 3.10728 3.26923 3.55932 3.81631 4.03823 4.09465 4.21399 4.27829 4.34099 4.38008 4.44439 4.52102 4.58327 4.66921 4.76558 4.84232 4.86572 4.87372 4.93675 5.20077 5.27525 5.28785 5.34451 5.40389 5.50788 5.56668 5.86482 5.88900 6.10372 6.33590 6.72289 6.75415 6.78837 7.27831 7.44779 8.88271 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012878 B = 0.005921 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.728718 B = 4728.006501 C = 6331.614853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.042 3.958 4 C 0.073 3.927 5 N -0.588 5.588 6 C 0.264 3.736 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.006 3.994 10 N -0.928 5.928 11 Si 0.969 3.031 12 H -0.260 1.260 13 H -0.277 1.277 14 H -0.276 1.276 15 C 0.535 3.465 16 O -0.586 6.586 17 C -0.176 4.176 18 C -0.110 4.110 19 C -0.118 4.118 20 C -0.079 4.079 21 C -0.123 4.123 22 C -0.108 4.108 23 C 0.129 3.871 24 O -0.501 6.501 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.046 0.954 33 H -0.017 1.017 34 H 0.266 0.734 35 H 0.159 0.841 36 H 0.175 0.825 37 H 0.171 0.829 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.238 22.310 7.621 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.035 4.035 4 C -0.048 4.048 5 N -0.318 5.318 6 C 0.144 3.856 7 C -0.583 4.583 8 H 0.069 0.931 9 C -0.192 4.192 10 N -0.567 5.567 11 Si 0.793 3.207 12 H -0.184 1.184 13 H -0.202 1.202 14 H -0.202 1.202 15 C 0.324 3.676 16 O -0.467 6.467 17 C -0.179 4.179 18 C -0.128 4.128 19 C -0.135 4.135 20 C -0.096 4.096 21 C -0.124 4.124 22 C -0.164 4.164 23 C 0.083 3.917 24 O -0.312 6.312 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.064 0.936 33 H 0.002 0.998 34 H 0.075 0.925 35 H 0.176 0.824 36 H 0.193 0.807 37 H 0.188 0.812 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -1.458 21.845 6.597 22.866 hybrid contribution 0.696 -1.536 -0.004 1.687 sum -0.762 20.309 6.593 21.366 Atomic orbital electron populations 1.22872 0.80072 1.03052 1.00923 1.88097 1.21169 1.28459 1.95482 1.23171 0.93035 0.85338 1.01971 1.22720 0.93927 1.01666 0.86518 1.48050 1.59028 1.08850 1.15851 1.18824 0.96783 0.75254 0.94778 1.21689 1.02683 0.92490 1.41479 0.93097 1.25888 1.00034 0.98029 0.95291 1.70085 1.33571 1.07043 1.46042 0.85450 0.78741 0.77246 0.79235 1.18423 1.20232 1.20185 1.18867 0.77775 0.87018 0.83909 1.90728 1.54517 1.75361 1.26119 1.20510 1.01216 0.93027 1.03173 1.22044 0.99687 0.95463 0.95611 1.21574 0.98297 0.93125 1.00552 1.21592 0.92902 1.01349 0.93804 1.20517 1.00274 0.91984 0.99595 1.20724 0.94506 1.00998 1.00186 1.18691 0.91194 0.91097 0.90729 1.84728 1.42672 1.68515 1.35282 0.91390 0.93940 0.90319 0.87850 0.93110 0.90936 0.83838 0.93575 0.99842 0.92529 0.82431 0.80748 0.81199 0.89825 0.92472 0.88842 0.74422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.41 -15.06 8.44 -148.98 -1.26 -16.31 16 3 C 0.04 1.18 5.22 71.98 0.38 1.55 16 4 C 0.07 2.48 5.40 86.38 0.47 2.95 16 5 N -0.59 -27.70 2.48 -829.93 -2.06 -29.76 16 6 C 0.26 15.59 5.06 85.63 0.43 16.03 16 7 C -0.54 -33.42 9.39 25.60 0.24 -33.18 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.01 0.38 5.46 84.65 0.46 0.84 16 10 N -0.93 -59.16 13.29 21.45 0.28 -58.87 16 11 Si 0.97 46.73 29.54 68.60 2.03 48.76 16 12 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 14 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 15 C 0.53 25.67 7.28 86.69 0.63 26.30 16 16 O -0.59 -34.61 15.44 13.40 0.21 -34.40 16 17 C -0.18 -6.23 5.54 -20.01 -0.11 -6.34 16 18 C -0.11 -2.70 7.43 22.52 0.17 -2.53 16 19 C -0.12 -1.89 10.02 22.24 0.22 -1.67 16 20 C -0.08 -1.25 9.68 22.30 0.22 -1.04 16 21 C -0.12 -2.78 5.89 -19.80 -0.12 -2.90 16 22 C -0.11 -1.83 9.79 71.24 0.70 -1.13 16 23 C 0.13 4.21 6.66 22.84 0.15 4.36 16 24 O -0.50 -18.22 11.15 -72.22 -0.80 -19.03 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.05 1.39 7.36 -2.39 -0.02 1.37 16 30 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.14 3.77 3.81 -2.76 -0.01 3.76 16 32 H 0.05 2.80 5.97 -2.39 -0.01 2.78 16 33 H -0.02 -1.14 7.34 -2.38 -0.02 -1.16 16 34 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 35 H 0.16 3.42 3.34 -2.91 -0.01 3.41 16 36 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.19 7.53 -2.39 -0.02 1.17 16 40 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 41 H 0.40 11.80 9.06 -74.06 -0.67 11.13 16 Total: -1.00 -89.70 339.06 3.87 -85.84 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.39 Total: 18.57 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 5.09 Total: 5.21 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -1.78 Total: -88.63 kcal Atomic # 8 Polarization: -67.89 SS G_CDS: -1.86 Total: -69.74 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -89.70 3.87 -85.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103428024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.609 kcal (2) G-P(sol) polarization free energy of solvation -89.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds