Wall clock time and date at job start Tue Mar 31 2020 06:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36000 * 117.00036 * 2 1 4 4 C 1.38569 * 120.06968 * 359.97438 * 3 2 1 5 5 C 1.38241 * 119.99881 * 180.02562 * 4 3 2 6 6 C 1.50691 * 119.92769 * 179.97438 * 5 4 3 7 7 C 1.38252 * 120.14496 * 359.97438 * 5 4 3 8 8 C 1.50701 * 119.92692 * 180.28017 * 7 5 4 9 9 N 1.46499 * 109.47218 * 174.93290 * 8 7 5 10 10 C 1.46506 * 119.99975 * 273.07456 * 9 8 7 11 11 C 1.34772 * 120.00219 * 93.07523 * 9 8 7 12 12 O 1.21691 * 119.99402 * 0.02562 * 11 9 8 13 13 C 1.46376 * 120.00273 * 179.97438 * 11 9 8 14 14 H 1.07997 * 120.00027 * 0.02562 * 13 11 9 15 15 C 1.40050 * 119.99998 * 180.02562 * 13 11 9 16 16 N 1.30670 * 119.99683 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99946 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46855 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46898 * 119.99875 * 17 15 13 20 20 H 1.48494 * 109.47091 * 239.99845 * 17 15 13 21 21 C 1.38249 * 120.14649 * 359.97438 * 7 5 4 22 22 C 1.38562 * 120.00141 * 0.02562 * 21 7 5 23 23 O 1.35985 * 120.07341 * 179.97438 * 22 21 7 24 24 C 1.42897 * 117.00305 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47492 * 59.99871 * 1 2 3 26 26 H 1.09002 * 109.46739 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47349 * 299.99391 * 1 2 3 28 28 H 1.07995 * 120.00089 * 359.97438 * 4 3 2 29 29 H 1.09003 * 109.47321 * 271.95462 * 6 5 4 30 30 H 1.09003 * 109.47463 * 31.95279 * 6 5 4 31 31 H 1.09005 * 109.47255 * 151.95445 * 6 5 4 32 32 H 1.08999 * 109.47148 * 294.93542 * 8 7 5 33 33 H 1.09001 * 109.46800 * 54.93370 * 8 7 5 34 34 H 1.08999 * 109.47045 * 95.48662 * 10 9 8 35 35 H 1.09000 * 109.46901 * 215.48640 * 10 9 8 36 36 H 1.08998 * 109.47032 * 335.48942 * 10 9 8 37 37 H 0.97008 * 119.99442 * 180.02562 * 16 15 13 38 38 H 1.08003 * 119.99472 * 179.97438 * 21 7 5 39 39 H 1.09002 * 109.47545 * 179.97438 * 24 23 22 40 40 H 1.08994 * 109.47398 * 300.00373 * 24 23 22 41 41 H 1.09003 * 109.46854 * 60.00140 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6058 -0.0011 6 6 1.1015 4.8696 -0.0022 7 6 3.3028 3.6799 -0.0005 8 6 3.9835 5.0244 0.0053 9 7 5.4315 4.8381 0.1267 10 6 6.0467 4.7227 1.4513 11 6 6.1978 4.7729 -0.9801 12 8 5.6868 4.8693 -2.0803 13 6 7.6447 4.5874 -0.8588 14 1 8.0982 4.5023 0.1177 15 6 8.4409 4.5201 -2.0089 16 7 7.8922 4.6236 -3.1903 17 14 10.2873 4.2826 -1.8541 18 1 10.6564 4.1951 -0.4183 19 1 10.6848 3.0298 -2.5452 20 1 10.9884 5.4347 -2.4756 21 6 4.0602 2.5234 0.0011 22 6 3.4359 1.2863 0.0016 23 8 4.1795 0.1478 0.0027 24 6 5.6003 0.3008 0.0026 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 0.2146 2.3196 -0.0014 29 1 0.8747 5.1546 -1.0296 30 1 0.1721 4.6998 0.5413 31 1 1.6641 5.6686 0.4807 32 1 3.7613 5.5482 -0.9244 33 1 3.6207 5.6116 0.8489 34 1 6.1595 3.6697 1.7090 35 1 7.0262 5.2009 1.4399 36 1 5.4122 5.2117 2.1904 37 1 8.4437 4.5767 -3.9870 38 1 5.1385 2.5841 0.0011 39 1 6.0716 -0.6821 0.0039 40 1 5.9066 0.8498 -0.8878 41 1 5.9064 0.8513 0.8921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119929440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:15 Heat of formation + Delta-G solvation = -79.491529 kcal Electronic energy + Delta-G solvation = -24350.886653 eV Core-core repulsion = 20811.139108 eV Total energy + Delta-G solvation = -3539.747545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33723 -38.28040 -37.96279 -36.73095 -33.92748 -32.48222 -31.75103 -30.47885 -28.14555 -27.28668 -26.96963 -26.03636 -25.26587 -23.98337 -21.50274 -20.71432 -19.16363 -17.97627 -16.63012 -16.51424 -16.38009 -15.81162 -15.58960 -14.95324 -14.55575 -14.45781 -14.23353 -14.14940 -13.91013 -13.48442 -13.13405 -12.80923 -12.37111 -12.16442 -12.10643 -11.74019 -11.62433 -11.52708 -11.51915 -11.41369 -11.15955 -11.01237 -10.88776 -10.80703 -10.64428 -10.34800 -10.17452 -10.08055 -8.91013 -8.20287 -7.63648 -7.32595 -7.30410 -6.23953 -4.70181 1.68536 1.78671 3.08771 3.17736 3.21315 3.47717 3.65525 4.03890 4.05700 4.50183 4.54315 4.97656 5.16442 5.19035 5.23363 5.30434 5.38539 5.49440 5.57094 5.64880 5.66665 5.75511 5.78349 5.88706 5.93841 5.95740 5.99981 6.07274 6.14413 6.35712 6.41138 6.49965 6.55670 6.70555 7.03541 7.09724 7.33839 7.39697 7.57729 7.90983 8.08533 8.30210 8.97616 9.36596 10.52872 10.71642 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.005020 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.799619 B = 5576.373478 C = 6375.725606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.084 3.916 4 C -0.175 4.175 5 C -0.092 4.092 6 C -0.108 4.108 7 C -0.079 4.079 8 C 0.165 3.835 9 N -0.648 5.648 10 C 0.104 3.896 11 C 0.554 3.446 12 O -0.572 6.572 13 C -0.544 4.544 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.765 5.765 17 Si 0.904 3.096 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.142 4.142 22 C 0.092 3.908 23 O -0.313 6.313 24 C 0.027 3.973 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.128 0.872 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.268 0.732 38 H 0.148 0.852 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.329 -4.548 8.943 14.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.039 3.961 4 C -0.194 4.194 5 C -0.093 4.093 6 C -0.165 4.165 7 C -0.081 4.081 8 C 0.040 3.960 9 N -0.386 5.386 10 C -0.041 4.041 11 C 0.360 3.640 12 O -0.454 6.454 13 C -0.581 4.581 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.393 5.393 17 Si 0.728 3.272 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.161 4.161 22 C 0.047 3.953 23 O -0.227 6.227 24 C -0.068 4.068 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.165 0.835 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.542 -4.865 8.127 14.173 hybrid contribution 0.919 0.067 0.102 0.927 sum -9.624 -4.798 8.230 13.541 Atomic orbital electron populations 1.22963 0.79431 1.03298 1.00916 1.86143 1.20315 1.26378 1.89641 1.18129 0.89035 0.84787 1.04099 1.20726 0.99086 0.91022 1.08560 1.19342 0.93103 0.94433 1.02389 1.20717 0.98681 0.94865 1.02227 1.20236 0.92348 0.96694 0.98784 1.19970 0.82361 0.91877 1.01754 1.48021 1.04718 1.79054 1.06829 1.21389 0.98545 0.99509 0.84647 1.18284 0.87295 0.76702 0.81698 1.90618 1.74591 1.54703 1.25450 1.21037 0.90378 1.53116 0.93549 0.90941 1.25731 0.99925 0.92755 0.94823 1.70033 1.36144 1.35035 0.98104 0.86376 0.83174 0.78388 0.79237 1.18710 1.20143 1.20137 1.21194 1.01709 0.89886 1.03266 1.18281 0.88024 0.86287 1.02726 1.86067 1.18850 1.28484 1.89312 1.23056 0.78329 1.03252 1.02210 0.93038 0.88745 0.93116 0.85396 0.91242 0.92168 0.91334 0.89238 0.91460 0.95156 0.91319 0.93785 0.92127 0.83469 0.88661 0.91939 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.31 16 2 O -0.31 -5.04 10.28 -34.24 -0.35 -5.39 16 3 C 0.08 1.48 6.70 -39.12 -0.26 1.22 16 4 C -0.18 -2.70 8.70 -39.46 -0.34 -3.05 16 5 C -0.09 -1.49 5.88 -104.62 -0.62 -2.10 16 6 C -0.11 -1.36 9.63 36.00 0.35 -1.01 16 7 C -0.08 -1.49 5.88 -104.61 -0.61 -2.11 16 8 C 0.16 3.19 4.69 -5.19 -0.02 3.17 16 9 N -0.65 -14.23 1.71 -184.63 -0.32 -14.54 16 10 C 0.10 1.85 9.72 59.85 0.58 2.44 16 11 C 0.55 15.20 6.88 -12.99 -0.09 15.11 16 12 O -0.57 -18.04 14.55 5.20 0.08 -17.97 16 13 C -0.54 -14.71 8.73 -35.63 -0.31 -15.02 16 14 H 0.07 1.79 6.12 -52.49 -0.32 1.47 16 15 C 0.09 2.37 5.50 -17.37 -0.10 2.28 16 16 N -0.76 -22.42 11.83 55.55 0.66 -21.77 16 17 Si 0.90 19.57 29.56 -169.99 -5.02 14.54 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 C -0.14 -2.87 8.14 -39.46 -0.32 -3.19 16 22 C 0.09 1.79 6.70 -39.12 -0.26 1.53 16 23 O -0.31 -5.93 10.28 -34.20 -0.35 -6.28 16 24 C 0.03 0.43 9.81 101.05 0.99 1.42 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.13 1.56 6.30 -52.49 -0.33 1.23 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.07 0.81 6.41 -51.93 -0.33 0.48 16 32 H 0.09 1.93 7.33 -51.93 -0.38 1.54 16 33 H 0.07 1.08 6.98 -51.93 -0.36 0.71 16 34 H 0.03 0.52 7.76 -51.93 -0.40 0.12 16 35 H 0.07 1.25 6.42 -51.93 -0.33 0.92 16 36 H 0.04 0.65 7.86 -51.93 -0.41 0.24 16 37 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 38 H 0.15 3.21 4.14 -52.48 -0.22 2.99 16 39 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.13 7.66 -51.93 -0.40 0.74 16 41 H 0.05 0.82 7.66 -51.93 -0.40 0.43 16 LS Contribution 337.11 15.07 5.08 5.08 Total: -1.00 -34.97 337.11 -5.76 -40.73 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.50 Total: 3.59 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -0.03 Total: 1.99 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.34 Total: -36.31 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.63 Total: -29.63 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.97 -5.76 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119929440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.759 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds