Wall clock time and date at job start Tue Mar 31 2020 06:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36000 * 117.00036 * 2 1 4 4 C 1.38569 * 120.06968 * 359.97438 * 3 2 1 5 5 C 1.38241 * 119.99881 * 180.02562 * 4 3 2 6 6 C 1.50691 * 119.92769 * 179.97438 * 5 4 3 7 7 C 1.38252 * 120.14496 * 359.97438 * 5 4 3 8 8 C 1.50701 * 119.92692 * 180.28017 * 7 5 4 9 9 N 1.46499 * 109.47218 * 174.93290 * 8 7 5 10 10 C 1.46506 * 119.99975 * 273.07456 * 9 8 7 11 11 C 1.34772 * 120.00219 * 93.07523 * 9 8 7 12 12 O 1.21691 * 119.99402 * 0.02562 * 11 9 8 13 13 C 1.46376 * 120.00273 * 179.97438 * 11 9 8 14 14 H 1.07997 * 120.00027 * 0.02562 * 13 11 9 15 15 C 1.40050 * 119.99998 * 180.02562 * 13 11 9 16 16 N 1.30670 * 119.99683 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99946 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46855 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46898 * 119.99875 * 17 15 13 20 20 H 1.48494 * 109.47091 * 239.99845 * 17 15 13 21 21 C 1.38249 * 120.14649 * 359.97438 * 7 5 4 22 22 C 1.38562 * 120.00141 * 0.02562 * 21 7 5 23 23 O 1.35985 * 120.07341 * 179.97438 * 22 21 7 24 24 C 1.42897 * 117.00305 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47492 * 59.99871 * 1 2 3 26 26 H 1.09002 * 109.46739 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47349 * 299.99391 * 1 2 3 28 28 H 1.07995 * 120.00089 * 359.97438 * 4 3 2 29 29 H 1.09003 * 109.47321 * 271.95462 * 6 5 4 30 30 H 1.09003 * 109.47463 * 31.95279 * 6 5 4 31 31 H 1.09005 * 109.47255 * 151.95445 * 6 5 4 32 32 H 1.08999 * 109.47148 * 294.93542 * 8 7 5 33 33 H 1.09001 * 109.46800 * 54.93370 * 8 7 5 34 34 H 1.08999 * 109.47045 * 95.48662 * 10 9 8 35 35 H 1.09000 * 109.46901 * 215.48640 * 10 9 8 36 36 H 1.08998 * 109.47032 * 335.48942 * 10 9 8 37 37 H 0.97008 * 119.99442 * 180.02562 * 16 15 13 38 38 H 1.08003 * 119.99472 * 179.97438 * 21 7 5 39 39 H 1.09002 * 109.47545 * 179.97438 * 24 23 22 40 40 H 1.08994 * 109.47398 * 300.00373 * 24 23 22 41 41 H 1.09003 * 109.46854 * 60.00140 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6058 -0.0011 6 6 1.1015 4.8696 -0.0022 7 6 3.3028 3.6799 -0.0005 8 6 3.9835 5.0244 0.0053 9 7 5.4315 4.8381 0.1267 10 6 6.0467 4.7227 1.4513 11 6 6.1978 4.7729 -0.9801 12 8 5.6868 4.8693 -2.0803 13 6 7.6447 4.5874 -0.8588 14 1 8.0982 4.5023 0.1177 15 6 8.4409 4.5201 -2.0089 16 7 7.8922 4.6236 -3.1903 17 14 10.2873 4.2826 -1.8541 18 1 10.6564 4.1951 -0.4183 19 1 10.6848 3.0298 -2.5452 20 1 10.9884 5.4347 -2.4756 21 6 4.0602 2.5234 0.0011 22 6 3.4359 1.2863 0.0016 23 8 4.1795 0.1478 0.0027 24 6 5.6003 0.3008 0.0026 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 0.2146 2.3196 -0.0014 29 1 0.8747 5.1546 -1.0296 30 1 0.1721 4.6998 0.5413 31 1 1.6641 5.6686 0.4807 32 1 3.7613 5.5482 -0.9244 33 1 3.6207 5.6116 0.8489 34 1 6.1595 3.6697 1.7090 35 1 7.0262 5.2009 1.4399 36 1 5.4122 5.2117 2.1904 37 1 8.4437 4.5767 -3.9870 38 1 5.1385 2.5841 0.0011 39 1 6.0716 -0.6821 0.0039 40 1 5.9066 0.8498 -0.8878 41 1 5.9064 0.8513 0.8921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119929440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:14 Heat of formation + Delta-G solvation = -102.416268 kcal Electronic energy + Delta-G solvation = -24351.880745 eV Core-core repulsion = 20811.139108 eV Total energy + Delta-G solvation = -3540.741636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.66711 -39.86926 -39.36733 -38.25791 -35.76045 -34.58276 -33.00330 -31.91906 -29.40641 -28.79114 -28.09734 -27.80262 -26.69850 -25.51158 -22.90391 -22.09140 -20.96160 -19.29316 -18.44598 -17.89130 -17.76927 -17.57494 -17.04072 -16.16441 -16.15815 -16.00366 -15.93768 -15.46796 -15.18360 -14.78318 -14.46435 -14.27027 -13.98896 -13.45386 -13.29512 -13.28126 -13.15616 -13.05292 -12.94106 -12.81432 -12.72565 -12.66986 -12.23379 -12.09022 -12.02988 -12.00536 -11.95981 -11.38953 -10.94662 -9.78117 -9.56051 -9.14129 -8.64507 -8.28095 -6.83404 0.33448 0.41903 1.38377 1.39340 1.56249 2.22925 2.33393 2.37401 2.47581 2.68998 2.87086 3.60715 3.84020 3.89132 4.05886 4.18886 4.26527 4.29422 4.38823 4.41868 4.43434 4.48398 4.58274 4.63439 4.65282 4.72197 4.75803 4.87325 4.89129 4.90196 5.02973 5.06906 5.29002 5.35586 5.37031 5.65333 5.74284 5.80968 6.08758 6.15696 6.43459 6.61548 6.89100 7.42505 8.49433 8.68981 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.005020 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.799619 B = 5576.373478 C = 6375.725606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.082 3.918 4 C -0.167 4.167 5 C -0.085 4.085 6 C -0.107 4.107 7 C -0.104 4.104 8 C 0.168 3.832 9 N -0.647 5.647 10 C 0.102 3.898 11 C 0.543 3.457 12 O -0.627 6.627 13 C -0.566 4.566 14 H 0.092 0.908 15 C 0.031 3.969 16 N -0.821 5.821 17 Si 0.989 3.011 18 H -0.244 1.244 19 H -0.271 1.271 20 H -0.270 1.270 21 C -0.160 4.160 22 C 0.062 3.938 23 O -0.326 6.326 24 C 0.030 3.970 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.168 0.832 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.272 0.728 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.031 0.969 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.455 -4.770 11.009 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.037 3.963 4 C -0.186 4.186 5 C -0.086 4.086 6 C -0.164 4.164 7 C -0.106 4.106 8 C 0.045 3.955 9 N -0.383 5.383 10 C -0.041 4.041 11 C 0.349 3.651 12 O -0.514 6.514 13 C -0.603 4.603 14 H 0.110 0.890 15 C -0.184 4.184 16 N -0.450 5.450 17 Si 0.809 3.191 18 H -0.167 1.167 19 H -0.196 1.196 20 H -0.195 1.195 21 C -0.179 4.179 22 C 0.017 3.983 23 O -0.241 6.241 24 C -0.064 4.064 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.088 0.912 28 H 0.185 0.815 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.049 0.951 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.700 -5.087 10.264 16.374 hybrid contribution 1.098 0.088 -0.490 1.205 sum -10.602 -4.999 9.774 15.262 Atomic orbital electron populations 1.23361 0.76464 1.05509 1.02332 1.86117 1.23397 1.25838 1.89361 1.18351 0.88643 0.86159 1.03153 1.21141 1.00879 0.89789 1.06756 1.19760 0.92202 0.96467 1.00190 1.20809 0.99530 0.93019 1.02996 1.20287 0.93829 0.95703 1.00736 1.20061 0.80906 0.92712 1.01847 1.47816 1.05786 1.77678 1.07036 1.21552 0.98960 1.00292 0.83334 1.18586 0.88192 0.76182 0.82178 1.90564 1.75700 1.57117 1.27983 1.21533 0.90871 1.53142 0.94730 0.89029 1.26930 1.05909 0.91557 0.94022 1.70211 1.38735 1.36720 0.99369 0.85089 0.75432 0.78383 0.80191 1.16696 1.19611 1.19509 1.21048 1.00673 0.91113 1.05052 1.18560 0.89310 0.86039 1.04376 1.86030 1.19734 1.28728 1.89567 1.23123 0.77637 1.04801 1.00873 0.91930 0.86395 0.91169 0.81460 0.90984 0.88880 0.90764 0.92169 0.87617 0.94703 0.91754 0.89997 0.91804 0.86062 0.85341 0.95068 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -10.29 10.28 -79.68 -0.82 -11.11 16 3 C 0.08 2.82 6.70 22.57 0.15 2.97 16 4 C -0.17 -4.75 8.70 22.35 0.19 -4.56 16 5 C -0.09 -2.61 5.88 -19.86 -0.12 -2.73 16 6 C -0.11 -2.36 9.63 71.23 0.69 -1.67 16 7 C -0.10 -3.96 5.88 -19.86 -0.12 -4.07 16 8 C 0.17 6.57 4.69 85.63 0.40 6.97 16 9 N -0.65 -29.01 1.71 -856.26 -1.46 -30.47 16 10 C 0.10 3.57 9.72 127.77 1.24 4.81 16 11 C 0.54 31.06 6.88 86.36 0.59 31.65 16 12 O -0.63 -41.94 14.55 -4.32 -0.06 -42.00 16 13 C -0.57 -31.43 8.73 24.83 0.22 -31.21 16 14 H 0.09 4.54 6.12 -2.91 -0.02 4.53 16 15 C 0.03 1.71 5.50 85.31 0.47 2.18 16 16 N -0.82 -50.26 11.83 21.84 0.26 -50.00 16 17 Si 0.99 40.62 29.56 68.60 2.03 42.64 16 18 H -0.24 -9.16 7.11 99.48 0.71 -8.45 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 21 C -0.16 -6.71 8.14 22.35 0.18 -6.53 16 22 C 0.06 2.48 6.70 22.57 0.15 2.63 16 23 O -0.33 -12.74 10.28 -79.52 -0.82 -13.56 16 24 C 0.03 1.03 9.81 113.37 1.11 2.14 16 25 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 26 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.01 7.66 -2.39 -0.02 1.00 16 28 H 0.17 3.33 6.30 -2.91 -0.02 3.31 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.46 8.10 -2.39 -0.02 1.44 16 31 H 0.07 1.55 6.41 -2.38 -0.02 1.54 16 32 H 0.06 2.69 7.33 -2.39 -0.02 2.68 16 33 H 0.11 3.20 6.98 -2.39 -0.02 3.18 16 34 H 0.03 1.19 7.76 -2.39 -0.02 1.17 16 35 H 0.06 2.30 6.42 -2.39 -0.02 2.29 16 36 H 0.08 2.24 7.86 -2.39 -0.02 2.22 16 37 H 0.27 15.16 8.29 -92.70 -0.77 14.39 16 38 H 0.12 5.63 4.14 -2.91 -0.01 5.62 16 39 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.03 1.22 7.66 -2.39 -0.02 1.20 16 41 H 0.06 1.88 7.66 -2.39 -0.02 1.86 16 Total: -1.00 -81.70 337.11 6.45 -75.25 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 1.05 Total: 25.24 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 6.28 Total: 4.01 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -1.21 Total: -80.47 kcal Atomic # 8 Polarization: -64.97 SS G_CDS: -1.70 Total: -66.67 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Total: -81.70 6.45 -75.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119929440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.166 kcal (2) G-P(sol) polarization free energy of solvation -81.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds