Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34163 * 125.42923 * 2 1 4 4 C 1.47056 * 105.95144 * 180.02562 * 3 2 1 5 5 C 1.47231 * 127.20171 * 179.97438 * 4 3 2 6 6 O 1.21532 * 119.99969 * 180.02562 * 5 4 3 7 7 O 1.34766 * 119.99987 * 0.02862 * 5 4 3 8 8 C 1.45203 * 117.00094 * 180.02562 * 7 5 4 9 9 C 1.53041 * 109.45777 * 209.99391 * 8 7 5 10 10 C 1.53192 * 109.31335 * 178.61047 * 9 8 7 11 11 N 1.46923 * 108.89264 * 54.56274 * 10 9 8 12 12 C 1.36934 * 120.63052 * 126.47035 * 11 10 9 13 13 H 1.07997 * 119.99978 * 331.92274 * 12 11 10 14 14 C 1.38810 * 120.00385 * 151.92570 * 12 11 10 15 15 N 1.31626 * 119.99638 * 343.17619 * 14 12 11 16 16 Si 1.86793 * 120.00463 * 163.17439 * 14 12 11 17 17 H 1.48508 * 109.46924 * 60.00059 * 16 14 12 18 18 H 1.48497 * 109.47413 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47362 * 300.00284 * 16 14 12 20 20 C 1.46963 * 118.71481 * 306.64195 * 11 10 9 21 21 C 1.53034 * 109.46533 * 89.92340 * 8 7 5 22 22 C 1.36497 * 105.59460 * 0.23920 * 4 3 2 23 23 C 1.50709 * 125.80507 * 179.75843 * 22 4 3 24 24 O 1.33625 * 108.38641 * 359.61165 * 22 4 3 25 25 H 1.08998 * 109.47477 * 89.99652 * 1 2 3 26 26 H 1.09005 * 109.47289 * 209.99780 * 1 2 3 27 27 H 1.09005 * 109.46929 * 329.99571 * 1 2 3 28 28 H 1.08001 * 127.02474 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.44457 * 329.95250 * 8 7 5 30 30 H 1.09005 * 109.50147 * 58.65840 * 9 8 7 31 31 H 1.08997 * 109.50434 * 298.56283 * 9 8 7 32 32 H 1.09000 * 109.59176 * 174.42588 * 10 9 8 33 33 H 1.09002 * 109.58672 * 294.70754 * 10 9 8 34 34 H 0.97000 * 119.99586 * 180.02562 * 15 14 12 35 35 H 1.08993 * 109.46933 * 293.56921 * 20 11 10 36 36 H 1.09000 * 109.71279 * 173.28325 * 20 11 10 37 37 H 1.09000 * 109.49720 * 301.33860 * 21 8 7 38 38 H 1.09010 * 109.49370 * 61.40148 * 21 8 7 39 39 H 1.08994 * 109.47132 * 90.00300 * 23 22 4 40 40 H 1.08993 * 109.46773 * 210.00176 * 23 22 4 41 41 H 1.08998 * 109.46700 * 329.99973 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2847 1.0932 0.0000 4 6 3.6711 0.6029 -0.0006 5 6 4.9013 1.4116 -0.0014 6 8 5.9873 0.8659 -0.0023 7 8 4.8233 2.7570 -0.0010 8 6 6.0767 3.4901 -0.0024 9 6 5.8867 4.8261 0.7195 10 6 7.2192 5.5814 0.7466 11 7 7.7241 5.7047 -0.6277 12 6 8.0621 6.9289 -1.1395 13 1 7.5746 7.8205 -0.7736 14 6 9.0312 7.0241 -2.1288 15 7 9.8525 6.0184 -2.3444 16 14 9.1698 8.5794 -3.1540 17 1 9.4503 9.7352 -2.2646 18 1 10.2756 8.4296 -4.1338 19 1 7.8941 8.8103 -3.8782 20 6 7.8557 4.4892 -1.4432 21 6 6.5161 3.7462 -1.4457 22 6 3.5786 -0.7590 -0.0064 23 6 4.7384 -1.7214 -0.0144 24 8 2.2850 -1.0936 -0.0006 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9591 2.1230 0.0004 29 1 6.8397 2.9052 0.5112 30 1 5.5512 4.6435 1.7405 31 1 5.1415 5.4218 0.1924 32 1 7.0682 6.5740 1.1708 33 1 7.9390 5.0308 1.3523 34 1 10.5299 6.0851 -3.0355 35 1 8.6282 3.8484 -1.0183 36 1 8.1257 4.7590 -2.4642 37 1 6.6285 2.7950 -1.9660 38 1 5.7646 4.3516 -1.9528 39 1 5.0212 -1.9580 1.0112 40 1 4.4479 -2.6359 -0.5315 41 1 5.5846 -1.2662 -0.5289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121066722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -61.147251 kcal Electronic energy + Delta-G solvation = -23496.715578 eV Core-core repulsion = 19957.763500 eV Total energy + Delta-G solvation = -3538.952077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.81723 -40.02016 -37.41656 -35.74311 -33.43527 -33.13819 -32.62479 -30.30607 -29.84547 -29.57142 -25.96031 -25.01993 -23.67657 -22.25927 -22.09045 -21.12402 -19.55468 -19.09743 -17.57846 -16.93978 -16.74451 -16.35060 -15.65124 -15.34564 -14.83152 -14.22274 -13.85916 -13.74460 -13.61451 -13.54600 -13.25399 -13.10546 -12.91421 -12.81525 -12.69318 -12.64153 -12.47738 -11.77798 -11.51948 -11.23212 -11.13200 -10.72443 -10.65938 -10.32056 -10.30649 -10.20766 -9.96291 -9.89472 -9.66987 -9.38041 -8.62492 -8.47584 -6.71799 -5.80385 -3.23608 1.09682 1.79991 2.42887 2.99541 3.15415 3.38820 3.44498 3.45795 4.22179 4.48681 4.56288 4.81177 4.94508 5.06962 5.12816 5.25063 5.27204 5.29297 5.38679 5.44272 5.45660 5.51086 5.57835 5.69639 5.76279 5.93086 6.04107 6.14845 6.22558 6.32807 6.48601 6.54041 6.61188 6.71208 6.84023 6.88941 6.97113 7.32576 7.62487 7.78190 8.04731 8.42917 9.18598 9.81554 10.38294 11.28697 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029232 B = 0.003188 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.632202 B = 8780.123993 C = 9071.239732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.024 4.024 3 C -0.163 4.163 4 C -0.225 4.225 5 C 0.536 3.464 6 O -0.511 6.511 7 O -0.350 6.350 8 C 0.099 3.901 9 C -0.128 4.128 10 C 0.149 3.851 11 N -0.592 5.592 12 C -0.256 4.256 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.902 5.902 16 Si 0.905 3.095 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.175 3.825 21 C -0.153 4.153 22 C 0.083 3.917 23 C -0.085 4.085 24 O -0.172 6.172 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.163 0.837 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.021 0.979 34 H 0.255 0.745 35 H 0.022 0.978 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.846 -13.736 5.260 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.182 4.182 4 C -0.228 4.228 5 C 0.382 3.618 6 O -0.402 6.402 7 O -0.267 6.267 8 C 0.045 3.955 9 C -0.167 4.167 10 C 0.022 3.978 11 N -0.315 5.315 12 C -0.386 4.386 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.546 5.546 16 Si 0.734 3.266 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.049 3.951 21 C -0.193 4.193 22 C 0.031 3.969 23 C -0.141 4.141 24 O -0.070 6.070 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.180 0.820 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.464 -14.116 5.138 22.287 hybrid contribution 0.234 0.951 -0.589 1.143 sum -16.230 -13.165 4.549 21.387 Atomic orbital electron populations 1.20322 0.84525 1.04195 1.03716 1.22263 0.94053 0.83533 1.07322 1.22677 0.90207 0.99885 1.05434 1.20323 0.92821 0.92250 1.17375 1.19851 0.87469 0.81897 0.72631 1.90805 1.29510 1.72976 1.46931 1.86592 1.38794 1.18112 1.83175 1.22943 0.82208 0.91499 0.98820 1.22229 1.01431 0.94153 0.98884 1.20880 0.91052 0.97724 0.88158 1.44108 1.75432 1.04256 1.07722 1.19144 1.15478 0.85233 1.18718 0.91551 1.25076 0.95376 0.97572 1.01540 1.70022 1.18874 1.31839 1.33901 0.86338 0.77202 0.82866 0.80167 1.20830 1.21608 1.20966 1.20761 0.89576 0.86085 0.98646 1.22666 1.02106 1.00511 0.93990 1.22792 0.83165 0.93667 0.97297 1.20671 0.92033 0.96740 1.04621 1.83698 1.15891 1.35677 1.71692 0.89957 0.90496 0.89070 0.81986 0.90265 0.92270 0.91164 0.91820 0.96087 0.93468 0.95947 0.88892 0.92771 0.91747 0.89076 0.90132 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.40 36.00 0.37 -0.05 16 2 C -0.02 -0.25 7.28 -35.75 -0.26 -0.51 16 3 C -0.16 -1.98 10.93 -37.44 -0.41 -2.39 16 4 C -0.23 -3.26 6.32 -103.30 -0.65 -3.91 16 5 C 0.54 9.25 7.93 34.38 0.27 9.52 16 6 O -0.51 -9.62 14.11 -19.29 -0.27 -9.89 16 7 O -0.35 -6.30 9.79 -40.67 -0.40 -6.70 16 8 C 0.10 1.91 2.42 -26.69 -0.06 1.85 16 9 C -0.13 -2.34 5.74 -26.61 -0.15 -2.50 16 10 C 0.15 3.15 6.51 -3.71 -0.02 3.13 16 11 N -0.59 -15.10 3.00 -172.30 -0.52 -15.61 16 12 C -0.26 -7.06 9.58 -15.06 -0.14 -7.21 16 13 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 14 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 15 N -0.90 -26.40 11.20 55.49 0.62 -25.77 16 16 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.18 4.34 5.30 -3.69 -0.02 4.32 16 21 C -0.15 -3.22 5.72 -26.62 -0.15 -3.37 16 22 C 0.08 1.04 7.38 -34.93 -0.26 0.78 16 23 C -0.08 -0.84 9.89 36.01 0.36 -0.48 16 24 O -0.17 -2.00 10.52 7.72 0.08 -1.91 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.08 1.61 7.16 -51.93 -0.37 1.24 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.29 7.93 -51.93 -0.41 0.87 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.11 1.28 6.49 -51.93 -0.34 0.94 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -31.92 341.31 -7.65 -39.57 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.06 Total: -0.69 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.22 Total: -0.83 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.10 Total: -41.39 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.59 Total: -18.51 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.92 -7.65 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121066722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.582 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds