Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34163 * 125.42923 * 2 1 4 4 C 1.47056 * 105.95144 * 180.02562 * 3 2 1 5 5 C 1.47231 * 127.20171 * 179.97438 * 4 3 2 6 6 O 1.21532 * 119.99969 * 180.02562 * 5 4 3 7 7 O 1.34766 * 119.99987 * 0.02862 * 5 4 3 8 8 C 1.45203 * 117.00094 * 180.02562 * 7 5 4 9 9 C 1.53041 * 109.45777 * 209.99391 * 8 7 5 10 10 C 1.53192 * 109.31335 * 178.61047 * 9 8 7 11 11 N 1.46923 * 108.89264 * 54.56274 * 10 9 8 12 12 C 1.36934 * 120.63052 * 126.47035 * 11 10 9 13 13 H 1.07997 * 119.99978 * 331.92274 * 12 11 10 14 14 C 1.38810 * 120.00385 * 151.92570 * 12 11 10 15 15 N 1.31626 * 119.99638 * 343.17619 * 14 12 11 16 16 Si 1.86793 * 120.00463 * 163.17439 * 14 12 11 17 17 H 1.48508 * 109.46924 * 60.00059 * 16 14 12 18 18 H 1.48497 * 109.47413 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47362 * 300.00284 * 16 14 12 20 20 C 1.46963 * 118.71481 * 306.64195 * 11 10 9 21 21 C 1.53034 * 109.46533 * 89.92340 * 8 7 5 22 22 C 1.36497 * 105.59460 * 0.23920 * 4 3 2 23 23 C 1.50709 * 125.80507 * 179.75843 * 22 4 3 24 24 O 1.33625 * 108.38641 * 359.61165 * 22 4 3 25 25 H 1.08998 * 109.47477 * 89.99652 * 1 2 3 26 26 H 1.09005 * 109.47289 * 209.99780 * 1 2 3 27 27 H 1.09005 * 109.46929 * 329.99571 * 1 2 3 28 28 H 1.08001 * 127.02474 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.44457 * 329.95250 * 8 7 5 30 30 H 1.09005 * 109.50147 * 58.65840 * 9 8 7 31 31 H 1.08997 * 109.50434 * 298.56283 * 9 8 7 32 32 H 1.09000 * 109.59176 * 174.42588 * 10 9 8 33 33 H 1.09002 * 109.58672 * 294.70754 * 10 9 8 34 34 H 0.97000 * 119.99586 * 180.02562 * 15 14 12 35 35 H 1.08993 * 109.46933 * 293.56921 * 20 11 10 36 36 H 1.09000 * 109.71279 * 173.28325 * 20 11 10 37 37 H 1.09000 * 109.49720 * 301.33860 * 21 8 7 38 38 H 1.09010 * 109.49370 * 61.40148 * 21 8 7 39 39 H 1.08994 * 109.47132 * 90.00300 * 23 22 4 40 40 H 1.08993 * 109.46773 * 210.00176 * 23 22 4 41 41 H 1.08998 * 109.46700 * 329.99973 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2847 1.0932 0.0000 4 6 3.6711 0.6029 -0.0006 5 6 4.9013 1.4116 -0.0014 6 8 5.9873 0.8659 -0.0023 7 8 4.8233 2.7570 -0.0010 8 6 6.0767 3.4901 -0.0024 9 6 5.8867 4.8261 0.7195 10 6 7.2192 5.5814 0.7466 11 7 7.7241 5.7047 -0.6277 12 6 8.0621 6.9289 -1.1395 13 1 7.5746 7.8205 -0.7736 14 6 9.0312 7.0241 -2.1288 15 7 9.8525 6.0184 -2.3444 16 14 9.1698 8.5794 -3.1540 17 1 9.4503 9.7352 -2.2646 18 1 10.2756 8.4296 -4.1338 19 1 7.8941 8.8103 -3.8782 20 6 7.8557 4.4892 -1.4432 21 6 6.5161 3.7462 -1.4457 22 6 3.5786 -0.7590 -0.0064 23 6 4.7384 -1.7214 -0.0144 24 8 2.2850 -1.0936 -0.0006 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9591 2.1230 0.0004 29 1 6.8397 2.9052 0.5112 30 1 5.5512 4.6435 1.7405 31 1 5.1415 5.4218 0.1924 32 1 7.0682 6.5740 1.1708 33 1 7.9390 5.0308 1.3523 34 1 10.5299 6.0851 -3.0355 35 1 8.6282 3.8484 -1.0183 36 1 8.1257 4.7590 -2.4642 37 1 6.6285 2.7950 -1.9660 38 1 5.7646 4.3516 -1.9528 39 1 5.0212 -1.9580 1.0112 40 1 4.4479 -2.6359 -0.5315 41 1 5.5846 -1.2662 -0.5289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121066722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -78.539874 kcal Electronic energy + Delta-G solvation = -23497.469779 eV Core-core repulsion = 19957.763500 eV Total energy + Delta-G solvation = -3539.706278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.73189 -41.44768 -39.09467 -37.31510 -34.68382 -34.20768 -33.97425 -32.11224 -31.55098 -30.44952 -27.43699 -26.37804 -24.89948 -23.99694 -23.58758 -22.34119 -21.11079 -20.43729 -18.87235 -18.79306 -17.70394 -17.57852 -16.92087 -16.75648 -16.62639 -15.76226 -15.43613 -15.09150 -14.86842 -14.61331 -14.52322 -14.28126 -14.17685 -14.09112 -13.86052 -13.50053 -13.29711 -13.27661 -13.07068 -12.87760 -12.59441 -12.56509 -12.40470 -12.14546 -11.99024 -11.87432 -11.68537 -11.44479 -11.11312 -10.94160 -10.56427 -9.48599 -8.77493 -7.91156 -5.37825 0.02395 0.90440 1.43169 1.47653 1.50618 1.57214 1.79540 1.93874 2.50035 3.25102 3.39994 3.53315 3.62879 3.72123 3.78486 3.84675 4.12205 4.18458 4.35119 4.38225 4.53581 4.53975 4.54858 4.61270 4.68896 4.74289 4.76075 4.85145 4.92775 4.94204 5.01868 5.03706 5.12358 5.22316 5.34254 5.38525 5.47328 5.60373 5.63694 5.94775 6.34828 6.67537 7.09033 7.78347 8.31735 9.16670 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029232 B = 0.003188 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.632202 B = 8780.123993 C = 9071.239732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.012 4.012 3 C -0.184 4.184 4 C -0.260 4.260 5 C 0.533 3.467 6 O -0.535 6.535 7 O -0.347 6.347 8 C 0.106 3.894 9 C -0.114 4.114 10 C 0.145 3.855 11 N -0.611 5.611 12 C -0.267 4.267 13 H 0.074 0.926 14 C -0.051 4.051 15 N -0.937 5.937 16 Si 0.972 3.028 17 H -0.272 1.272 18 H -0.295 1.295 19 H -0.277 1.277 20 C 0.185 3.815 21 C -0.139 4.139 22 C 0.090 3.910 23 C -0.085 4.085 24 O -0.171 6.171 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.172 0.828 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.019 0.981 34 H 0.251 0.749 35 H -0.002 1.002 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.528 -14.026 5.898 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 C -0.203 4.203 4 C -0.263 4.263 5 C 0.380 3.620 6 O -0.427 6.427 7 O -0.263 6.263 8 C 0.052 3.948 9 C -0.153 4.153 10 C 0.019 3.981 11 N -0.334 5.334 12 C -0.397 4.397 13 H 0.092 0.908 14 C -0.247 4.247 15 N -0.583 5.583 16 Si 0.799 3.201 17 H -0.198 1.198 18 H -0.221 1.221 19 H -0.203 1.203 20 C 0.059 3.941 21 C -0.179 4.179 22 C 0.037 3.963 23 C -0.141 4.141 24 O -0.068 6.068 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.127 0.873 28 H 0.189 0.811 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.037 0.963 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.186 -14.408 5.803 24.685 hybrid contribution 1.008 0.942 -0.739 1.565 sum -18.178 -13.466 5.064 23.182 Atomic orbital electron populations 1.20569 0.81186 1.05798 1.05147 1.23043 0.95665 0.82509 1.04718 1.22840 0.89308 1.01048 1.07064 1.20368 0.92722 0.93044 1.20159 1.20354 0.88298 0.81517 0.71820 1.90793 1.30644 1.73077 1.48221 1.86591 1.37461 1.18823 1.83474 1.22682 0.82728 0.92192 0.97243 1.22048 0.99604 0.92955 1.00672 1.21044 0.92184 0.98893 0.85978 1.44363 1.75746 1.03747 1.09573 1.19534 1.15125 0.86247 1.18801 0.90841 1.25892 0.95286 1.00678 1.02819 1.70187 1.19652 1.33958 1.34483 0.85275 0.76962 0.79419 0.78395 1.19780 1.22136 1.20296 1.20460 0.90857 0.86053 0.96706 1.22416 0.99912 0.99866 0.95660 1.23161 0.84075 0.93411 0.95627 1.20748 0.90577 0.97155 1.05587 1.83746 1.15525 1.36185 1.71333 0.88454 0.89020 0.87335 0.81092 0.91486 0.89081 0.90904 0.90662 0.96323 0.93984 0.98405 0.91939 0.92716 0.91749 0.87707 0.87342 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.40 71.23 0.74 0.14 16 2 C -0.01 -0.21 7.28 24.75 0.18 -0.03 16 3 C -0.18 -4.18 10.93 23.65 0.26 -3.92 16 4 C -0.26 -7.37 6.32 -19.01 -0.12 -7.49 16 5 C 0.53 18.39 7.93 70.19 0.56 18.94 16 6 O -0.54 -20.49 14.11 19.73 0.28 -20.21 16 7 O -0.35 -12.29 9.79 -56.77 -0.56 -12.85 16 8 C 0.11 4.06 2.42 30.62 0.07 4.14 16 9 C -0.11 -4.01 5.74 30.67 0.18 -3.83 16 10 C 0.14 6.04 6.51 86.36 0.56 6.60 16 11 N -0.61 -31.50 3.00 -699.03 -2.10 -33.59 16 12 C -0.27 -14.80 9.58 84.03 0.81 -13.99 16 13 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 14 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 15 N -0.94 -56.46 11.20 21.65 0.24 -56.22 16 16 Si 0.97 45.05 29.59 68.60 2.03 47.08 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.19 9.51 5.30 86.35 0.46 9.97 16 21 C -0.14 -5.95 5.72 30.67 0.18 -5.77 16 22 C 0.09 2.14 7.38 25.28 0.19 2.33 16 23 C -0.08 -1.58 9.89 71.24 0.70 -0.88 16 24 O -0.17 -3.58 10.52 4.70 0.05 -3.53 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 29 H 0.07 2.75 7.16 -2.39 -0.02 2.74 16 30 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.07 2.94 7.93 -2.39 -0.02 2.92 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.06 3.57 6.07 -2.39 -0.01 3.55 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.06 2.74 8.14 -2.38 -0.02 2.72 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 2.11 6.49 -2.39 -0.02 2.10 16 Total: -1.00 -70.02 341.31 6.15 -63.87 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.02 Total: 11.75 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 5.18 Total: 3.71 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -1.85 Total: -89.81 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.23 Total: -36.59 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -70.02 6.15 -63.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121066722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.669 kcal (2) G-P(sol) polarization free energy of solvation -70.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds