Wall clock time and date at job start Tue Mar 31 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35996 * 117.00091 * 2 1 4 4 C 1.38565 * 120.06969 * 0.24711 * 3 2 1 5 5 C 1.38242 * 119.99432 * 180.29642 * 4 3 2 6 6 C 1.50703 * 119.92591 * 179.73046 * 5 4 3 7 7 C 1.38254 * 120.14674 * 359.45408 * 5 4 3 8 8 C 1.50699 * 119.92556 * 180.25084 * 7 5 4 9 9 H 1.09004 * 109.47190 * 324.99874 * 8 7 5 10 10 C 1.53002 * 109.47245 * 85.00195 * 8 7 5 11 11 N 1.46497 * 109.47190 * 205.00261 * 8 7 5 12 12 C 1.34783 * 120.00359 * 154.99749 * 11 8 7 13 13 O 1.21687 * 119.99691 * 0.02562 * 12 11 8 14 14 C 1.46367 * 120.00178 * 179.97438 * 12 11 8 15 15 H 1.08000 * 120.00383 * 0.02562 * 14 12 11 16 16 C 1.40050 * 119.99818 * 180.02562 * 14 12 11 17 17 N 1.30670 * 120.00185 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99856 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47309 * 90.00224 * 18 16 14 20 20 H 1.48502 * 109.47471 * 210.00247 * 18 16 14 21 21 H 1.48497 * 109.47620 * 330.00382 * 18 16 14 22 22 C 1.38240 * 120.14887 * 0.27904 * 7 5 4 23 23 C 1.38561 * 119.99446 * 359.97438 * 22 7 5 24 24 O 1.36002 * 120.06871 * 179.97438 * 23 22 7 25 25 C 1.42894 * 117.00119 * 0.02562 * 24 23 22 26 26 H 1.08993 * 109.47000 * 299.99503 * 1 2 3 27 27 H 1.08998 * 109.47184 * 60.00221 * 1 2 3 28 28 H 1.09001 * 109.46860 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00295 * 0.04715 * 4 3 2 30 30 H 1.09002 * 109.47152 * 269.72650 * 6 5 4 31 31 H 1.09001 * 109.46980 * 149.72750 * 6 5 4 32 32 H 1.09004 * 109.47113 * 29.72731 * 6 5 4 33 33 H 1.09002 * 109.46681 * 60.00180 * 10 8 7 34 34 H 1.08995 * 109.47141 * 179.97438 * 10 8 7 35 35 H 1.09000 * 109.47217 * 300.00175 * 10 8 7 36 36 H 0.96999 * 120.00232 * 335.00021 * 11 8 7 37 37 H 0.96995 * 120.00277 * 179.97438 * 17 16 14 38 38 H 1.07999 * 120.00314 * 179.97438 * 22 7 5 39 39 H 1.09004 * 109.47010 * 180.02562 * 25 24 23 40 40 H 1.09006 * 109.46850 * 299.99738 * 25 24 23 41 41 H 1.09000 * 109.47667 * 59.99587 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 0.0052 5 6 1.9224 3.6057 -0.0010 6 6 1.1016 4.8696 -0.0015 7 6 3.3030 3.6798 -0.0010 8 6 3.9837 5.0242 -0.0021 9 1 3.3968 5.7282 -0.5922 10 6 4.1019 5.5372 1.4346 11 7 5.3211 4.8940 -0.5856 12 6 5.9157 5.9622 -1.1531 13 8 5.3419 7.0349 -1.1803 14 6 7.2522 5.8322 -1.7357 15 1 7.7617 4.8802 -1.7112 16 6 7.8702 6.9423 -2.3248 17 7 7.2540 8.0942 -2.3540 18 14 9.5756 6.7762 -3.0689 19 1 9.4566 6.3955 -4.4994 20 1 10.2918 8.0724 -2.9596 21 1 10.3341 5.7285 -2.3395 22 6 4.0603 2.5233 -0.0006 23 6 3.4359 1.2864 0.0003 24 8 4.1796 0.1476 0.0002 25 6 5.6003 0.3006 -0.0003 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2147 2.3196 0.0100 30 1 0.9038 5.1739 -1.0293 31 1 1.6502 5.6592 0.5120 32 1 0.1573 4.6898 0.5124 33 1 4.6888 4.8333 2.0245 34 1 4.5946 6.5094 1.4338 35 1 3.1068 5.6341 1.8688 36 1 5.7787 4.0390 -0.5637 37 1 7.6822 8.8631 -2.7617 38 1 5.1386 2.5839 -0.0010 39 1 6.0716 -0.6823 -0.0008 40 1 5.9062 0.8503 -0.8906 41 1 5.9069 0.8506 0.8894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130286012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:49 Heat of formation + Delta-G solvation = -90.092858 kcal Electronic energy + Delta-G solvation = -23831.174457 eV Core-core repulsion = 20290.967203 eV Total energy + Delta-G solvation = -3540.207253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.63706 -38.45427 -38.20237 -36.77730 -33.95684 -32.38465 -32.01479 -30.13698 -29.05805 -27.89759 -27.24611 -26.12486 -25.72866 -22.97763 -21.77929 -20.61335 -19.28676 -18.39582 -17.36403 -16.74233 -16.45898 -16.04014 -15.33988 -15.21607 -14.88364 -14.46932 -14.38850 -14.23345 -13.70598 -13.37058 -13.16653 -13.09809 -12.50849 -12.43120 -12.29651 -12.10313 -11.85040 -11.63891 -11.50968 -11.29190 -11.15798 -11.14931 -10.97482 -10.82181 -10.48768 -10.40979 -10.26616 -10.17880 -8.86578 -8.52893 -7.66904 -7.59137 -7.47106 -6.19439 -4.65214 1.39047 1.53199 3.13289 3.20237 3.23157 3.26966 3.35444 3.77342 4.09597 4.58227 4.74657 4.81672 4.89635 4.97985 5.05604 5.10433 5.20145 5.26575 5.30239 5.37895 5.49073 5.58642 5.63005 5.70333 5.72916 5.79787 5.93204 6.01362 6.09985 6.27419 6.28523 6.34615 6.56149 6.73336 6.82838 6.89965 7.08997 7.42107 7.64178 7.90147 8.09284 8.31592 9.01601 9.51218 10.59108 10.77708 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.004187 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.012867 B = 6686.402086 C = 7674.380683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.089 3.911 4 C -0.170 4.170 5 C -0.078 4.078 6 C -0.117 4.117 7 C -0.069 4.069 8 C 0.191 3.809 9 H 0.089 0.911 10 C -0.153 4.153 11 N -0.762 5.762 12 C 0.557 3.443 13 O -0.579 6.579 14 C -0.546 4.546 15 H 0.066 0.934 16 C 0.089 3.911 17 N -0.767 5.767 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.161 4.161 23 C 0.096 3.904 24 O -0.310 6.310 25 C 0.024 3.976 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.132 0.868 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.376 0.624 37 H 0.268 0.732 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.125 -13.736 5.688 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.044 3.956 4 C -0.189 4.189 5 C -0.079 4.079 6 C -0.173 4.173 7 C -0.070 4.070 8 C 0.084 3.916 9 H 0.107 0.893 10 C -0.212 4.212 11 N -0.418 5.418 12 C 0.361 3.639 13 O -0.461 6.461 14 C -0.583 4.583 15 H 0.084 0.916 16 C -0.131 4.131 17 N -0.396 5.396 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.180 4.180 23 C 0.051 3.949 24 O -0.224 6.224 25 C -0.071 4.071 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.150 0.850 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.210 0.790 37 H 0.079 0.921 38 H 0.155 0.845 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.519 -13.114 5.609 17.723 hybrid contribution 1.086 -0.289 -0.384 1.188 sum -9.432 -13.403 5.225 17.202 Atomic orbital electron populations 1.23005 0.79082 1.03543 1.01105 1.86146 1.20593 1.26146 1.89458 1.18130 0.89027 0.84940 1.03484 1.20834 0.99467 0.90880 1.07718 1.19407 0.93000 0.94639 1.00809 1.20853 0.98812 0.94944 1.02730 1.19853 0.92774 0.95319 0.99006 1.19374 0.86401 0.91461 0.94332 0.89286 1.22164 1.00798 1.02066 0.96128 1.46340 1.16624 1.13763 1.65091 1.18196 0.86462 0.81922 0.77345 1.90593 1.66442 1.27038 1.62074 1.20868 1.00539 0.96947 1.39957 0.91579 1.25685 0.98524 0.94622 0.94288 1.70012 1.36244 1.00234 1.33090 0.86397 0.82424 0.78294 0.79779 1.19756 1.20456 1.18948 1.20891 1.00574 0.90397 1.06093 1.18162 0.88119 0.85952 1.02699 1.86119 1.18661 1.28348 1.89276 1.23085 0.78627 1.03659 1.01747 0.92922 0.92875 0.88556 0.84999 0.90944 0.90535 0.91904 0.93264 0.91401 0.92952 0.79043 0.92123 0.84487 0.88399 0.92317 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.27 10.28 -34.23 -0.35 -4.62 16 3 C 0.09 1.32 6.70 -39.12 -0.26 1.06 16 4 C -0.17 -2.27 8.69 -39.46 -0.34 -2.62 16 5 C -0.08 -1.14 5.88 -104.61 -0.62 -1.75 16 6 C -0.12 -1.48 9.21 36.01 0.33 -1.14 16 7 C -0.07 -1.14 5.06 -104.62 -0.53 -1.67 16 8 C 0.19 3.68 2.09 -69.08 -0.14 3.54 16 9 H 0.09 1.91 6.41 -51.93 -0.33 1.58 16 10 C -0.15 -2.71 9.27 37.16 0.34 -2.37 16 11 N -0.76 -16.94 4.99 -56.35 -0.28 -17.22 16 12 C 0.56 15.60 7.71 -12.99 -0.10 15.50 16 13 O -0.58 -18.33 14.68 5.20 0.08 -18.25 16 14 C -0.55 -15.28 9.54 -35.63 -0.34 -15.62 16 15 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 16 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 17 N -0.77 -22.82 11.83 55.55 0.66 -22.16 16 18 Si 0.91 20.00 29.56 -169.99 -5.02 14.98 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 C -0.16 -2.54 8.22 -39.46 -0.32 -2.87 16 23 C 0.10 1.50 6.70 -39.12 -0.26 1.24 16 24 O -0.31 -4.63 10.28 -34.25 -0.35 -4.98 16 25 C 0.02 0.27 9.81 101.05 0.99 1.26 16 26 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 27 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.13 1.38 6.30 -52.49 -0.33 1.04 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.02 5.41 -51.93 -0.28 0.74 16 32 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.05 0.79 6.90 -51.93 -0.36 0.43 16 36 H 0.38 7.45 6.18 -40.82 -0.25 7.20 16 37 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 38 H 0.14 2.05 4.31 -52.49 -0.23 1.83 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 41 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -35.24 338.22 -5.99 -41.23 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.45 Total: 7.77 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -0.36 Total: -1.84 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.38 Total: -39.38 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.63 Total: -27.85 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.24 -5.99 -41.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130286012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.864 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds