Wall clock time and date at job start Tue Mar 31 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35996 * 117.00091 * 2 1 4 4 C 1.38565 * 120.06969 * 0.24711 * 3 2 1 5 5 C 1.38242 * 119.99432 * 180.29642 * 4 3 2 6 6 C 1.50703 * 119.92591 * 179.73046 * 5 4 3 7 7 C 1.38254 * 120.14674 * 359.45408 * 5 4 3 8 8 C 1.50699 * 119.92556 * 180.25084 * 7 5 4 9 9 H 1.09004 * 109.47190 * 324.99874 * 8 7 5 10 10 C 1.53002 * 109.47245 * 85.00195 * 8 7 5 11 11 N 1.46497 * 109.47190 * 205.00261 * 8 7 5 12 12 C 1.34783 * 120.00359 * 154.99749 * 11 8 7 13 13 O 1.21687 * 119.99691 * 0.02562 * 12 11 8 14 14 C 1.46367 * 120.00178 * 179.97438 * 12 11 8 15 15 H 1.08000 * 120.00383 * 0.02562 * 14 12 11 16 16 C 1.40050 * 119.99818 * 180.02562 * 14 12 11 17 17 N 1.30670 * 120.00185 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99856 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47309 * 90.00224 * 18 16 14 20 20 H 1.48502 * 109.47471 * 210.00247 * 18 16 14 21 21 H 1.48497 * 109.47620 * 330.00382 * 18 16 14 22 22 C 1.38240 * 120.14887 * 0.27904 * 7 5 4 23 23 C 1.38561 * 119.99446 * 359.97438 * 22 7 5 24 24 O 1.36002 * 120.06871 * 179.97438 * 23 22 7 25 25 C 1.42894 * 117.00119 * 0.02562 * 24 23 22 26 26 H 1.08993 * 109.47000 * 299.99503 * 1 2 3 27 27 H 1.08998 * 109.47184 * 60.00221 * 1 2 3 28 28 H 1.09001 * 109.46860 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00295 * 0.04715 * 4 3 2 30 30 H 1.09002 * 109.47152 * 269.72650 * 6 5 4 31 31 H 1.09001 * 109.46980 * 149.72750 * 6 5 4 32 32 H 1.09004 * 109.47113 * 29.72731 * 6 5 4 33 33 H 1.09002 * 109.46681 * 60.00180 * 10 8 7 34 34 H 1.08995 * 109.47141 * 179.97438 * 10 8 7 35 35 H 1.09000 * 109.47217 * 300.00175 * 10 8 7 36 36 H 0.96999 * 120.00232 * 335.00021 * 11 8 7 37 37 H 0.96995 * 120.00277 * 179.97438 * 17 16 14 38 38 H 1.07999 * 120.00314 * 179.97438 * 22 7 5 39 39 H 1.09004 * 109.47010 * 180.02562 * 25 24 23 40 40 H 1.09006 * 109.46850 * 299.99738 * 25 24 23 41 41 H 1.09000 * 109.47667 * 59.99587 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 0.0052 5 6 1.9224 3.6057 -0.0010 6 6 1.1016 4.8696 -0.0015 7 6 3.3030 3.6798 -0.0010 8 6 3.9837 5.0242 -0.0021 9 1 3.3968 5.7282 -0.5922 10 6 4.1019 5.5372 1.4346 11 7 5.3211 4.8940 -0.5856 12 6 5.9157 5.9622 -1.1531 13 8 5.3419 7.0349 -1.1803 14 6 7.2522 5.8322 -1.7357 15 1 7.7617 4.8802 -1.7112 16 6 7.8702 6.9423 -2.3248 17 7 7.2540 8.0942 -2.3540 18 14 9.5756 6.7762 -3.0689 19 1 9.4566 6.3955 -4.4994 20 1 10.2918 8.0724 -2.9596 21 1 10.3341 5.7285 -2.3395 22 6 4.0603 2.5233 -0.0006 23 6 3.4359 1.2864 0.0003 24 8 4.1796 0.1476 0.0002 25 6 5.6003 0.3006 -0.0003 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2147 2.3196 0.0100 30 1 0.9038 5.1739 -1.0293 31 1 1.6502 5.6592 0.5120 32 1 0.1573 4.6898 0.5124 33 1 4.6888 4.8333 2.0245 34 1 4.5946 6.5094 1.4338 35 1 3.1068 5.6341 1.8688 36 1 5.7787 4.0390 -0.5637 37 1 7.6822 8.8631 -2.7617 38 1 5.1386 2.5839 -0.0010 39 1 6.0716 -0.6823 -0.0008 40 1 5.9062 0.8503 -0.8906 41 1 5.9069 0.8506 0.8894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130286012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:48 Heat of formation + Delta-G solvation = -114.678858 kcal Electronic energy + Delta-G solvation = -23832.240585 eV Core-core repulsion = 20290.967203 eV Total energy + Delta-G solvation = -3541.273382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.76328 -39.85568 -39.37283 -38.39718 -35.65160 -34.50090 -33.14887 -31.76028 -30.29378 -28.92374 -28.16752 -28.04843 -26.86040 -24.32091 -23.10071 -21.96428 -21.03462 -19.74961 -18.89935 -17.93745 -17.77489 -17.29885 -17.02806 -16.36529 -16.12334 -15.98576 -15.60676 -15.30919 -15.15278 -14.90158 -14.55739 -14.47044 -14.06854 -13.83187 -13.38295 -13.25131 -13.11980 -13.05034 -12.89892 -12.73459 -12.64120 -12.53668 -12.31536 -12.07548 -12.04506 -11.97247 -11.68724 -11.49033 -10.92667 -9.84940 -9.65171 -9.50622 -8.68027 -8.28130 -6.84864 0.25563 0.35831 1.40155 1.41495 1.56401 2.24551 2.34783 2.36425 2.48566 2.61746 3.08961 3.59492 3.68087 3.74544 3.96652 4.14095 4.26621 4.34171 4.39184 4.39462 4.45133 4.46842 4.50765 4.57563 4.69101 4.73291 4.76418 4.81854 4.82617 4.94037 5.04064 5.19965 5.23185 5.31400 5.32314 5.62713 5.67679 5.88532 6.10133 6.22393 6.31377 6.60564 6.87659 7.53360 8.50508 8.68503 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.004187 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.012867 B = 6686.402086 C = 7674.380683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.087 3.913 4 C -0.162 4.162 5 C -0.079 4.079 6 C -0.117 4.117 7 C -0.089 4.089 8 C 0.194 3.806 9 H 0.061 0.939 10 C -0.144 4.144 11 N -0.751 5.751 12 C 0.542 3.458 13 O -0.626 6.626 14 C -0.575 4.575 15 H 0.085 0.915 16 C 0.031 3.969 17 N -0.820 5.820 18 Si 0.995 3.005 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.249 1.249 22 C -0.165 4.165 23 C 0.081 3.919 24 O -0.324 6.324 25 C 0.017 3.983 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.166 0.834 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.389 0.611 37 H 0.274 0.726 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.055 0.945 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 -15.840 5.827 19.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.041 3.959 4 C -0.180 4.180 5 C -0.080 4.080 6 C -0.173 4.173 7 C -0.090 4.090 8 C 0.089 3.911 9 H 0.079 0.921 10 C -0.202 4.202 11 N -0.406 5.406 12 C 0.346 3.654 13 O -0.513 6.513 14 C -0.612 4.612 15 H 0.103 0.897 16 C -0.185 4.185 17 N -0.449 5.449 18 Si 0.815 3.185 19 H -0.188 1.188 20 H -0.198 1.198 21 H -0.172 1.172 22 C -0.184 4.184 23 C 0.036 3.964 24 O -0.239 6.239 25 C -0.078 4.078 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.183 0.817 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.224 0.776 37 H 0.084 0.916 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.074 0.926 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.848 -15.281 5.776 19.610 hybrid contribution 1.051 0.246 -0.394 1.149 sum -9.797 -15.035 5.382 18.735 Atomic orbital electron populations 1.23368 0.76508 1.05559 1.02339 1.86130 1.23294 1.25670 1.89155 1.18375 0.89075 0.85903 1.02502 1.21111 1.01031 0.89611 1.06266 1.19635 0.92319 0.96055 0.99986 1.20891 0.99842 0.93655 1.02910 1.19624 0.93790 0.93715 1.01886 1.19357 0.84545 0.92937 0.94306 0.92084 1.22055 1.02327 1.00193 0.95626 1.46040 1.17701 1.12951 1.63954 1.18536 0.86988 0.82335 0.77523 1.90546 1.67628 1.29136 1.64004 1.21417 1.01058 0.98236 1.40470 0.89688 1.26921 1.03623 0.93737 0.94169 1.70177 1.38923 1.01522 1.34318 0.85055 0.75733 0.78829 0.78903 1.18750 1.19781 1.17215 1.20854 1.00626 0.90497 1.06462 1.18342 0.88969 0.85940 1.03199 1.86100 1.20238 1.28255 1.89273 1.23329 0.77123 1.05424 1.01888 0.91386 0.91785 0.86379 0.81650 0.91153 0.91801 0.88642 0.92152 0.94878 0.90057 0.77610 0.91604 0.84467 0.85776 0.92588 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.31 10.28 -79.64 -0.82 -9.13 16 3 C 0.09 2.42 6.70 22.57 0.15 2.57 16 4 C -0.16 -3.91 8.69 22.35 0.19 -3.72 16 5 C -0.08 -2.21 5.88 -19.86 -0.12 -2.33 16 6 C -0.12 -2.79 9.21 71.24 0.66 -2.13 16 7 C -0.09 -2.95 5.06 -19.86 -0.10 -3.05 16 8 C 0.19 7.73 2.09 44.25 0.09 7.82 16 9 H 0.06 2.77 6.41 -2.38 -0.02 2.75 16 10 C -0.14 -5.21 9.27 71.98 0.67 -4.54 16 11 N -0.75 -34.47 4.99 -450.40 -2.25 -36.72 16 12 C 0.54 31.55 7.71 86.36 0.67 32.22 16 13 O -0.63 -41.73 14.68 -4.31 -0.06 -41.79 16 14 C -0.58 -32.72 9.54 24.83 0.24 -32.48 16 15 H 0.08 4.33 7.85 -2.91 -0.02 4.31 16 16 C 0.03 1.72 5.50 85.31 0.47 2.18 16 17 N -0.82 -50.24 11.83 21.84 0.26 -49.98 16 18 Si 1.00 40.99 29.56 68.60 2.03 43.02 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 22 C -0.17 -5.20 8.22 22.35 0.18 -5.01 16 23 C 0.08 2.47 6.70 22.57 0.15 2.62 16 24 O -0.32 -9.39 10.28 -79.71 -0.82 -10.20 16 25 C 0.02 0.36 9.81 113.37 1.11 1.47 16 26 H 0.07 0.78 7.65 -2.39 -0.02 0.76 16 27 H 0.06 0.79 7.67 -2.39 -0.02 0.77 16 28 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.17 2.78 6.30 -2.91 -0.02 2.76 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.68 5.41 -2.39 -0.01 1.67 16 32 H 0.09 1.63 8.08 -2.38 -0.02 1.61 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 2.43 6.90 -2.39 -0.02 2.41 16 36 H 0.39 15.69 6.18 -92.71 -0.57 15.12 16 37 H 0.27 15.21 8.29 -92.71 -0.77 14.44 16 38 H 0.14 4.12 4.31 -2.91 -0.01 4.11 16 39 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 1.21 7.66 -2.38 -0.02 1.19 16 41 H 0.06 1.22 7.66 -2.39 -0.02 1.20 16 Total: -1.00 -79.49 338.22 4.30 -75.18 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.49 Total: 32.66 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 5.48 Total: -3.03 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -1.99 Total: -86.70 kcal Atomic # 8 Polarization: -59.43 SS G_CDS: -1.70 Total: -61.13 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -79.49 4.30 -75.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130286012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.495 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds