Wall clock time and date at job start Tue Mar 31 2020 06:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39921 * 120.47023 * 2 1 4 4 N 1.31703 * 119.83774 * 180.02562 * 3 2 1 5 5 C 1.33469 * 120.82711 * 0.02562 * 4 3 2 6 6 S 1.71204 * 119.51351 * 179.97438 * 5 4 3 7 7 N 1.34613 * 120.97314 * 359.97438 * 5 4 3 8 8 C 1.46508 * 119.94003 * 179.97438 * 7 5 4 9 9 N 1.46893 * 109.47066 * 286.03247 * 8 7 5 10 10 C 1.46903 * 111.00197 * 293.56950 * 9 8 7 11 11 C 1.50690 * 109.47313 * 170.00231 * 10 9 8 12 12 H 1.08005 * 120.00432 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00300 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99688 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00116 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47091 * 60.00167 * 15 13 11 17 17 H 1.48502 * 109.47106 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47371 * 299.99828 * 15 13 11 19 19 C 1.46903 * 110.99702 * 169.61706 * 9 8 7 20 20 C 1.53000 * 109.47308 * 288.39648 * 19 9 8 21 21 C 1.52995 * 117.51414 * 114.95039 * 20 19 9 22 22 C 1.52996 * 117.49851 * 183.57913 * 20 19 9 23 23 C 1.35938 * 120.12513 * 0.26971 * 7 5 4 24 24 H 1.08997 * 109.47344 * 89.99652 * 1 2 3 25 25 H 1.08997 * 109.47228 * 209.99652 * 1 2 3 26 26 H 1.09006 * 109.46826 * 329.99768 * 1 2 3 27 27 H 1.08008 * 120.08099 * 0.04372 * 3 2 1 28 28 H 1.08998 * 109.47098 * 166.02944 * 8 7 5 29 29 H 1.09000 * 109.46533 * 46.03613 * 8 7 5 30 30 H 1.09001 * 109.47136 * 290.00230 * 10 9 8 31 31 H 1.09005 * 109.46610 * 49.99997 * 10 9 8 32 32 H 0.96994 * 120.00177 * 180.02562 * 14 13 11 33 33 H 1.09007 * 109.46920 * 168.39891 * 19 9 8 34 34 H 1.08996 * 109.46837 * 48.40069 * 19 9 8 35 35 H 1.09005 * 115.54930 * 329.25172 * 20 19 9 36 36 H 1.09009 * 117.49856 * 214.97034 * 21 20 19 37 37 H 1.09002 * 117.50386 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.50252 * 359.97438 * 22 20 19 39 39 H 1.09001 * 117.49634 * 145.00324 * 22 20 19 40 40 H 1.07997 * 120.42008 * 179.72488 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.2060 0.0000 4 7 3.5335 1.1914 -0.0005 5 6 4.2047 0.0378 -0.0015 6 16 5.9167 0.0582 -0.0028 7 7 3.5556 -1.1414 -0.0016 8 6 4.3151 -2.3942 -0.0033 9 7 4.8945 -2.6137 -1.3352 10 6 3.8436 -2.8501 -2.3340 11 6 4.4479 -2.8263 -3.7143 12 1 5.5069 -2.6532 -3.8373 13 6 3.6489 -3.0253 -4.8203 14 7 2.3595 -3.2365 -4.6705 15 14 4.3979 -2.9950 -6.5312 16 1 5.4302 -4.0571 -6.6385 17 1 3.3356 -3.2341 -7.5409 18 1 5.0235 -1.6704 -6.7743 19 6 5.8590 -3.7215 -1.3136 20 6 7.1220 -3.2838 -0.5691 21 6 7.4527 -3.9983 0.7427 22 6 8.2864 -4.2744 -0.5101 23 6 2.1965 -1.1721 -0.0061 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6855 2.1465 0.0007 28 1 3.6510 -3.2221 0.2450 29 1 5.1144 -2.3354 0.7355 30 1 3.3844 -3.8224 -2.1552 31 1 3.0858 -2.0705 -2.2556 32 1 1.7975 -3.3769 -5.4485 33 1 6.1174 -3.9984 -2.3358 34 1 5.4166 -4.5786 -0.8058 35 1 7.3661 -2.2238 -0.6404 36 1 7.9145 -3.4084 1.5346 37 1 6.7703 -4.7802 1.0759 38 1 8.1526 -5.2383 -1.0013 39 1 9.2966 -3.8662 -0.5425 40 1 1.6709 -2.1155 -0.0106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132402501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:27 Heat of formation + Delta-G solvation = 96.924949 kcal Electronic energy + Delta-G solvation = -21756.058849 eV Core-core repulsion = 18699.006918 eV Total energy + Delta-G solvation = -3057.051930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51863 -38.00818 -36.22793 -34.43545 -33.98733 -32.48711 -28.22757 -27.74988 -27.27573 -25.11211 -24.07243 -23.13021 -22.00669 -21.02233 -19.81507 -18.26479 -18.19569 -16.84177 -16.60217 -15.79551 -15.10801 -14.87434 -14.84942 -14.20269 -14.00970 -13.81293 -13.37241 -13.11013 -13.08349 -12.72142 -12.37133 -12.14554 -11.89719 -11.60588 -11.28574 -11.17708 -10.95277 -10.80470 -10.77923 -10.49205 -10.14370 -9.97140 -9.90963 -9.74141 -9.51059 -9.29746 -8.56852 -7.63940 -7.10713 -6.72991 -6.17715 -4.18104 0.35687 0.93954 2.24148 2.83858 3.27779 3.28649 3.31266 3.37074 4.11764 4.20649 4.31657 4.33300 4.45649 4.67282 4.72180 4.98773 5.11354 5.19594 5.23605 5.34210 5.45028 5.46682 5.51870 5.59412 5.72741 5.83473 5.88354 5.94617 6.13396 6.19889 6.29687 6.36705 6.42488 6.52056 6.92111 6.94166 7.07063 7.57579 7.65788 7.82665 7.95778 8.30019 8.89464 9.47047 10.93169 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.009729 B = 0.007591 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.278276 B = 3687.571401 C = 5573.999619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.223 4.223 3 C 0.223 3.777 4 N -0.485 5.485 5 C 0.452 3.548 6 S -0.541 6.541 7 N -0.435 5.435 8 C 0.256 3.744 9 N -0.524 5.524 10 C 0.190 3.810 11 C -0.506 4.506 12 H 0.067 0.933 13 C 0.058 3.942 14 N -0.901 5.901 15 Si 0.899 3.101 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.275 1.275 19 C 0.106 3.894 20 C -0.136 4.136 21 C -0.192 4.192 22 C -0.184 4.184 23 C 0.174 3.826 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.177 0.823 28 H 0.059 0.941 29 H 0.120 0.880 30 H -0.008 1.008 31 H 0.022 0.978 32 H 0.262 0.738 33 H 0.098 0.902 34 H 0.023 0.977 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 0.565 12.087 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.235 4.235 3 C 0.036 3.964 4 N -0.200 5.200 5 C 0.102 3.898 6 S -0.395 6.395 7 N -0.120 5.120 8 C 0.043 3.957 9 N -0.249 5.249 10 C 0.065 3.935 11 C -0.544 4.544 12 H 0.085 0.915 13 C -0.144 4.144 14 N -0.540 5.540 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.021 4.021 20 C -0.155 4.155 21 C -0.229 4.229 22 C -0.222 4.222 23 C 0.031 3.969 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.194 0.806 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.010 0.990 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.041 0.959 35 H 0.147 0.853 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.901 1.462 11.841 12.278 hybrid contribution -1.741 -1.413 -0.940 2.432 sum -4.642 0.049 10.901 11.848 Atomic orbital electron populations 1.20540 0.88027 1.03252 1.03324 1.20494 0.99130 0.92525 1.11380 1.24000 0.90605 0.98461 0.83382 1.70143 1.08213 1.24328 1.17285 1.23947 0.99535 0.80953 0.85348 1.92627 0.88643 1.93703 1.64485 1.46179 1.05839 1.10572 1.49404 1.22708 0.95323 0.80281 0.97367 1.61849 1.17695 1.43339 1.01984 1.19823 0.88773 0.94641 0.90215 1.21051 0.95426 1.48266 0.89647 0.91474 1.24956 0.94809 0.95091 0.99502 1.69915 1.04290 1.49272 1.30537 0.86521 0.78685 0.78913 0.83187 1.20067 1.21319 1.20017 1.21479 0.89764 0.89441 1.01463 1.22653 0.95592 0.99632 0.97626 1.22987 1.04273 1.03592 0.92013 1.22876 0.96323 1.01027 1.01973 1.22840 0.83529 1.01328 0.89234 0.90388 0.91145 0.90777 0.80570 0.92388 0.86229 0.98982 0.96023 0.92816 0.88358 0.95937 0.85270 0.89401 0.89743 0.89313 0.89318 0.80428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.04 36.01 0.36 -0.31 16 2 C -0.22 -2.46 5.87 -104.80 -0.62 -3.07 16 3 C 0.22 2.76 11.00 -16.98 -0.19 2.57 16 4 N -0.49 -8.51 10.39 -13.80 -0.14 -8.66 16 5 C 0.45 8.77 7.61 -88.23 -0.67 8.10 16 6 S -0.54 -12.07 27.68 -107.50 -2.98 -15.04 16 7 N -0.43 -7.23 2.32 -121.61 -0.28 -7.52 16 8 C 0.26 4.28 4.49 -63.31 -0.28 3.99 16 9 N -0.52 -10.70 4.05 -239.98 -0.97 -11.68 16 10 C 0.19 4.56 4.62 -4.98 -0.02 4.54 16 11 C -0.51 -13.78 8.29 -34.44 -0.29 -14.07 16 12 H 0.07 1.88 7.25 -52.48 -0.38 1.50 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -25.34 13.29 55.43 0.74 -24.60 16 15 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.11 1.98 5.09 -3.82 -0.02 1.96 16 20 C -0.14 -2.30 4.98 -90.62 -0.45 -2.76 16 21 C -0.19 -2.68 10.11 -26.74 -0.27 -2.95 16 22 C -0.18 -2.64 10.25 -26.73 -0.27 -2.92 16 23 C 0.17 2.26 8.95 -16.54 -0.15 2.11 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 26 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 27 H 0.18 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.06 0.82 7.81 -51.93 -0.41 0.42 16 29 H 0.12 2.00 6.37 -51.93 -0.33 1.67 16 30 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 31 H 0.02 0.55 6.52 -51.93 -0.34 0.21 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.10 2.05 6.59 -51.93 -0.34 1.71 16 34 H 0.02 0.38 7.80 -51.93 -0.40 -0.02 16 35 H 0.13 2.57 7.12 -51.93 -0.37 2.20 16 36 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.18 1.79 7.93 -52.49 -0.42 1.37 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -34.17 344.01 -12.36 -46.52 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.92 Total: 0.57 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.96 Total: -1.30 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.66 Total: -52.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -12.07 SS G_CDS: -2.98 Total: -15.04 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.17 -12.36 -46.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132402501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.449 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds