Wall clock time and date at job start Tue Mar 31 2020 06:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39921 * 120.47023 * 2 1 4 4 N 1.31703 * 119.83774 * 180.02562 * 3 2 1 5 5 C 1.33469 * 120.82711 * 0.02562 * 4 3 2 6 6 S 1.71204 * 119.51351 * 179.97438 * 5 4 3 7 7 N 1.34613 * 120.97314 * 359.97438 * 5 4 3 8 8 C 1.46508 * 119.94003 * 179.97438 * 7 5 4 9 9 N 1.46893 * 109.47066 * 286.03247 * 8 7 5 10 10 C 1.46903 * 111.00197 * 293.56950 * 9 8 7 11 11 C 1.50690 * 109.47313 * 170.00231 * 10 9 8 12 12 H 1.08005 * 120.00432 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00300 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99688 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00116 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47091 * 60.00167 * 15 13 11 17 17 H 1.48502 * 109.47106 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47371 * 299.99828 * 15 13 11 19 19 C 1.46903 * 110.99702 * 169.61706 * 9 8 7 20 20 C 1.53000 * 109.47308 * 288.39648 * 19 9 8 21 21 C 1.52995 * 117.51414 * 114.95039 * 20 19 9 22 22 C 1.52996 * 117.49851 * 183.57913 * 20 19 9 23 23 C 1.35938 * 120.12513 * 0.26971 * 7 5 4 24 24 H 1.08997 * 109.47344 * 89.99652 * 1 2 3 25 25 H 1.08997 * 109.47228 * 209.99652 * 1 2 3 26 26 H 1.09006 * 109.46826 * 329.99768 * 1 2 3 27 27 H 1.08008 * 120.08099 * 0.04372 * 3 2 1 28 28 H 1.08998 * 109.47098 * 166.02944 * 8 7 5 29 29 H 1.09000 * 109.46533 * 46.03613 * 8 7 5 30 30 H 1.09001 * 109.47136 * 290.00230 * 10 9 8 31 31 H 1.09005 * 109.46610 * 49.99997 * 10 9 8 32 32 H 0.96994 * 120.00177 * 180.02562 * 14 13 11 33 33 H 1.09007 * 109.46920 * 168.39891 * 19 9 8 34 34 H 1.08996 * 109.46837 * 48.40069 * 19 9 8 35 35 H 1.09005 * 115.54930 * 329.25172 * 20 19 9 36 36 H 1.09009 * 117.49856 * 214.97034 * 21 20 19 37 37 H 1.09002 * 117.50386 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.50252 * 359.97438 * 22 20 19 39 39 H 1.09001 * 117.49634 * 145.00324 * 22 20 19 40 40 H 1.07997 * 120.42008 * 179.72488 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.2060 0.0000 4 7 3.5335 1.1914 -0.0005 5 6 4.2047 0.0378 -0.0015 6 16 5.9167 0.0582 -0.0028 7 7 3.5556 -1.1414 -0.0016 8 6 4.3151 -2.3942 -0.0033 9 7 4.8945 -2.6137 -1.3352 10 6 3.8436 -2.8501 -2.3340 11 6 4.4479 -2.8263 -3.7143 12 1 5.5069 -2.6532 -3.8373 13 6 3.6489 -3.0253 -4.8203 14 7 2.3595 -3.2365 -4.6705 15 14 4.3979 -2.9950 -6.5312 16 1 5.4302 -4.0571 -6.6385 17 1 3.3356 -3.2341 -7.5409 18 1 5.0235 -1.6704 -6.7743 19 6 5.8590 -3.7215 -1.3136 20 6 7.1220 -3.2838 -0.5691 21 6 7.4527 -3.9983 0.7427 22 6 8.2864 -4.2744 -0.5101 23 6 2.1965 -1.1721 -0.0061 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6855 2.1465 0.0007 28 1 3.6510 -3.2221 0.2450 29 1 5.1144 -2.3354 0.7355 30 1 3.3844 -3.8224 -2.1552 31 1 3.0858 -2.0705 -2.2556 32 1 1.7975 -3.3769 -5.4485 33 1 6.1174 -3.9984 -2.3358 34 1 5.4166 -4.5786 -0.8058 35 1 7.3661 -2.2238 -0.6404 36 1 7.9145 -3.4084 1.5346 37 1 6.7703 -4.7802 1.0759 38 1 8.1526 -5.2383 -1.0013 39 1 9.2966 -3.8662 -0.5425 40 1 1.6709 -2.1155 -0.0106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132402501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:26 Heat of formation + Delta-G solvation = 76.120648 kcal Electronic energy + Delta-G solvation = -21756.960991 eV Core-core repulsion = 18699.006918 eV Total energy + Delta-G solvation = -3057.954073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.78168 -39.41525 -37.49321 -35.95950 -35.05661 -34.43004 -29.78467 -28.90123 -28.69692 -26.57453 -25.46078 -24.44150 -23.14751 -22.64244 -21.18692 -19.48962 -19.47508 -18.71413 -17.88902 -17.34360 -16.73611 -16.32233 -16.07786 -15.71725 -15.19680 -15.07916 -14.73471 -14.43220 -14.09271 -13.90309 -13.75507 -13.45255 -13.28422 -13.02113 -12.85998 -12.75063 -12.47665 -12.31581 -12.29240 -12.12281 -11.88215 -11.45864 -11.12471 -11.09682 -10.99586 -10.72045 -10.60055 -9.20427 -8.67388 -8.37594 -8.26411 -6.33779 -0.82745 -0.22160 0.90872 1.35389 1.37280 1.43307 1.45139 2.10273 2.34914 2.93087 2.98158 3.05245 3.13846 3.38727 3.43879 3.76553 3.85053 3.97653 4.09467 4.17190 4.20690 4.26715 4.50553 4.55389 4.72091 4.80616 4.86917 4.91717 4.97702 5.03687 5.06438 5.09833 5.17083 5.20992 5.32567 5.43981 5.58828 5.59750 5.95515 6.24820 6.39844 6.48632 6.78569 7.34584 8.81939 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.009729 B = 0.007591 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.278276 B = 3687.571401 C = 5573.999619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.193 4.193 3 C 0.225 3.775 4 N -0.520 5.520 5 C 0.461 3.539 6 S -0.657 6.657 7 N -0.432 5.432 8 C 0.258 3.742 9 N -0.541 5.541 10 C 0.212 3.788 11 C -0.524 4.524 12 H 0.048 0.952 13 C 0.016 3.984 14 N -0.921 5.921 15 Si 0.953 3.047 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.282 1.282 19 C 0.115 3.885 20 C -0.158 4.158 21 C -0.167 4.167 22 C -0.174 4.174 23 C 0.152 3.848 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.226 0.774 28 H 0.094 0.906 29 H 0.118 0.882 30 H -0.019 1.019 31 H 0.006 0.994 32 H 0.266 0.734 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.961 -0.104 12.868 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.204 4.204 3 C 0.043 3.957 4 N -0.236 5.236 5 C 0.105 3.895 6 S -0.514 6.514 7 N -0.114 5.114 8 C 0.046 3.954 9 N -0.266 5.266 10 C 0.086 3.914 11 C -0.563 4.563 12 H 0.066 0.934 13 C -0.183 4.183 14 N -0.561 5.561 15 Si 0.778 3.222 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.208 1.208 19 C -0.013 4.013 20 C -0.177 4.177 21 C -0.204 4.204 22 C -0.212 4.212 23 C 0.010 3.990 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.123 0.877 27 H 0.242 0.758 28 H 0.111 0.889 29 H 0.136 0.864 30 H -0.001 1.001 31 H 0.024 0.976 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.833 0.789 12.634 13.938 hybrid contribution -1.157 -1.157 -1.134 1.991 sum -6.990 -0.368 11.500 13.462 Atomic orbital electron populations 1.20732 0.84278 1.05943 1.04050 1.21118 1.01388 0.91179 1.06729 1.24901 0.88966 1.01219 0.80649 1.70049 1.10825 1.23727 1.19041 1.23401 0.98244 0.82265 0.85613 1.92759 0.93028 1.94506 1.71100 1.46145 1.07374 1.09678 1.48231 1.22763 0.96271 0.81174 0.95225 1.61662 1.17169 1.44389 1.03400 1.19402 0.88897 0.93157 0.89911 1.21299 0.94751 1.48371 0.91850 0.93419 1.25610 0.95294 0.94807 1.02578 1.69970 1.04936 1.49706 1.31459 0.85686 0.78335 0.78509 0.79627 1.19351 1.20072 1.20822 1.21339 0.90219 0.89580 1.00114 1.22318 0.96231 0.98459 1.00696 1.23024 1.03559 1.02800 0.91019 1.22968 0.95793 1.00456 1.01964 1.23651 0.81947 1.03865 0.89543 0.90286 0.89070 0.87696 0.75755 0.88869 0.86449 1.00099 0.97598 0.92535 0.91525 0.94037 0.88648 0.88998 0.87790 0.88181 0.88713 0.77194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.04 71.24 0.71 -0.11 16 2 C -0.19 -3.53 5.87 -19.98 -0.12 -3.65 16 3 C 0.22 4.88 11.00 85.12 0.94 5.82 16 4 N -0.52 -18.05 10.39 -197.56 -2.05 -20.11 16 5 C 0.46 18.23 7.61 179.51 1.37 19.59 16 6 S -0.66 -31.38 27.68 -56.49 -1.56 -32.94 16 7 N -0.43 -14.10 2.32 -538.67 -1.25 -15.35 16 8 C 0.26 8.55 4.49 170.81 0.77 9.32 16 9 N -0.54 -22.67 4.05 -913.16 -3.70 -26.37 16 10 C 0.21 10.29 4.62 85.55 0.40 10.69 16 11 C -0.52 -29.30 8.29 25.60 0.21 -29.08 16 12 H 0.05 2.79 7.25 -2.91 -0.02 2.77 16 13 C 0.02 0.91 5.46 84.66 0.46 1.37 16 14 N -0.92 -51.43 13.29 21.45 0.28 -51.14 16 15 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 19 C 0.12 4.38 5.09 86.30 0.44 4.82 16 20 C -0.16 -5.52 4.98 -10.80 -0.05 -5.57 16 21 C -0.17 -4.51 10.11 30.59 0.31 -4.20 16 22 C -0.17 -4.92 10.25 30.59 0.31 -4.61 16 23 C 0.15 3.53 8.95 83.53 0.75 4.27 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 25 H 0.09 0.55 8.09 -2.39 -0.02 0.53 16 26 H 0.10 0.40 8.10 -2.38 -0.02 0.38 16 27 H 0.23 2.51 8.06 -2.91 -0.02 2.49 16 28 H 0.09 2.43 7.81 -2.39 -0.02 2.41 16 29 H 0.12 4.00 6.37 -2.39 -0.02 3.98 16 30 H -0.02 -0.93 8.12 -2.39 -0.02 -0.94 16 31 H 0.01 0.31 6.52 -2.38 -0.02 0.29 16 32 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.07 2.91 6.59 -2.38 -0.02 2.90 16 34 H 0.04 1.39 7.80 -2.39 -0.02 1.37 16 35 H 0.10 4.09 7.12 -2.38 -0.02 4.07 16 36 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 37 H 0.10 2.40 8.04 -2.39 -0.02 2.39 16 38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 40 H 0.21 3.42 7.93 -2.91 -0.02 3.39 16 Total: -1.00 -80.12 344.01 1.27 -78.85 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.03 Total: 11.96 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 6.49 Total: 8.66 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -6.72 Total: -112.97 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -31.38 SS G_CDS: -1.56 Total: -32.94 kcal Total: -80.12 1.27 -78.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132402501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.974 kcal (2) G-P(sol) polarization free energy of solvation -80.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds