Wall clock time and date at job start Tue Mar 31 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47275 * 2 1 4 4 C 1.50695 * 109.47598 * 180.02562 * 3 2 1 5 5 N 1.29019 * 124.92086 * 89.99675 * 4 3 2 6 6 C 1.31781 * 117.12845 * 180.02562 * 5 4 3 7 7 C 1.50700 * 122.75238 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47155 * 275.69390 * 7 6 5 9 9 C 1.46899 * 111.00004 * 164.38735 * 8 7 6 10 10 C 1.50697 * 109.46944 * 189.99641 * 9 8 7 11 11 H 1.07993 * 120.00332 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00031 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99695 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99992 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47458 * 90.00084 * 14 12 10 16 16 H 1.48505 * 109.46812 * 209.99872 * 14 12 10 17 17 H 1.48496 * 109.47227 * 329.99271 * 14 12 10 18 18 C 1.46898 * 110.99627 * 288.34115 * 8 7 6 19 19 C 1.52996 * 109.47401 * 297.35069 * 18 8 7 20 20 C 1.47201 * 109.47601 * 180.22088 * 19 18 8 21 21 N 8.94802 * 170.46615 * 165.70725 * 2 1 3 22 22 C 1.33638 * 114.49909 * 0.23354 * 6 5 4 23 23 S 1.70979 * 124.91396 * 269.99814 * 4 3 2 24 24 H 1.08997 * 109.47502 * 60.00164 * 1 2 3 25 25 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47150 * 299.99933 * 1 2 3 27 27 H 1.09000 * 109.47150 * 240.00067 * 2 1 3 28 28 H 1.08997 * 109.47502 * 119.99836 * 2 1 3 29 29 H 1.09005 * 109.47412 * 59.99808 * 3 2 1 30 30 H 1.09001 * 109.47164 * 300.00480 * 3 2 1 31 31 H 1.08998 * 109.47409 * 155.68772 * 7 6 5 32 32 H 1.09005 * 109.46848 * 35.69004 * 7 6 5 33 33 H 1.09002 * 109.47358 * 309.99758 * 9 8 7 34 34 H 1.09005 * 109.47142 * 69.99850 * 9 8 7 35 35 H 0.97001 * 119.99941 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47558 * 57.35837 * 18 8 7 37 37 H 1.09007 * 109.46937 * 177.35568 * 18 8 7 38 38 H 1.09003 * 109.47664 * 300.22626 * 19 18 8 39 39 H 1.09000 * 109.47170 * 60.22267 * 19 18 8 40 40 H 1.07996 * 126.03818 * 179.77220 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2851 1.4427 -1.0588 6 6 5.5908 1.4422 -0.8807 7 6 6.5699 1.4418 -2.0263 8 7 6.7831 0.0635 -2.4877 9 6 7.4228 0.0440 -3.8099 10 6 7.4031 -1.3602 -4.3567 11 1 6.9594 -2.1581 -3.7800 12 6 7.9516 -1.6261 -5.5935 13 7 8.4914 -0.6543 -6.2961 14 14 7.9266 -3.3665 -6.2716 15 1 6.6822 -3.5749 -7.0546 16 1 9.1052 -3.5719 -7.1514 17 1 7.9727 -4.3363 -5.1480 18 6 7.5689 -0.7028 -1.5113 19 6 8.9553 -0.0726 -1.3652 20 6 9.7446 -0.8436 -0.3907 21 7 10.3544 -1.4362 0.3659 22 6 5.9755 1.4367 0.3991 23 16 4.5261 1.4424 1.4010 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 7.5181 1.8645 -1.6941 32 1 6.1717 2.0414 -2.8448 33 1 6.8801 0.7048 -4.4859 34 1 8.4544 0.3843 -3.7196 35 1 8.8777 -0.8415 -7.1660 36 1 7.0610 -0.6914 -0.5469 37 1 7.6721 -1.7320 -1.8555 38 1 9.4617 -0.0805 -2.3304 39 1 8.8524 0.9552 -1.0173 40 1 6.9947 1.4319 0.7561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132809690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:11 Heat of formation + Delta-G solvation = 62.098062 kcal Electronic energy + Delta-G solvation = -20741.382528 eV Core-core repulsion = 17682.820390 eV Total energy + Delta-G solvation = -3058.562137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91615 -37.67452 -35.95316 -35.19126 -32.72121 -31.22364 -30.25767 -27.98778 -27.29561 -25.64981 -23.80093 -22.90240 -21.39395 -20.08231 -19.52833 -17.49953 -17.42163 -16.26917 -15.50507 -15.38908 -15.12875 -14.69273 -14.57496 -14.22369 -13.75383 -13.70997 -13.50155 -13.26049 -12.89657 -12.40089 -12.23454 -12.14504 -12.02599 -11.74412 -11.70830 -11.44002 -11.34684 -11.15264 -11.03799 -10.84815 -10.71046 -10.64887 -10.25534 -9.92428 -9.44251 -9.31038 -9.24854 -8.61145 -8.47478 -7.41293 -6.08638 -4.09796 0.83037 1.47113 1.83932 2.96935 3.03423 3.06150 3.30720 3.37334 3.40696 4.10478 4.28745 4.40637 4.79389 4.86559 4.91899 4.99288 5.25097 5.28329 5.31047 5.36798 5.41717 5.43757 5.56769 5.62036 5.62964 5.70221 5.89014 5.92373 5.99522 6.10229 6.16164 6.22923 6.36377 6.56275 7.13460 7.17188 7.70541 7.82489 7.94073 8.01809 8.05002 8.41081 8.97200 9.55116 11.01815 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.004515 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.828697 B = 6200.273813 C = 7564.432105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.041 4.041 4 C 0.053 3.947 5 N -0.448 5.448 6 C 0.099 3.901 7 C 0.116 3.884 8 N -0.517 5.517 9 C 0.188 3.812 10 C -0.509 4.509 11 H 0.064 0.936 12 C 0.059 3.941 13 N -0.897 5.897 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.070 3.930 19 C -0.075 4.075 20 C 0.224 3.776 21 N -0.460 5.460 22 C -0.261 4.261 23 S 0.084 5.916 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.036 0.964 34 H 0.002 0.998 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.675 6.977 13.722 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.082 4.082 4 C -0.226 4.226 5 N -0.161 5.161 6 C -0.034 4.034 7 C -0.015 4.015 8 N -0.240 5.240 9 C 0.064 3.936 10 C -0.547 4.547 11 H 0.082 0.918 12 C -0.143 4.143 13 N -0.536 5.536 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.060 4.060 19 C -0.117 4.117 20 C -0.094 4.094 21 N -0.138 5.138 22 C -0.400 4.400 23 S 0.338 5.662 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.020 0.980 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.116 0.884 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.587 5.921 15.167 19.421 hybrid contribution 1.336 -0.318 -1.401 1.962 sum -9.251 5.603 13.767 17.507 Atomic orbital electron populations 1.21754 0.95171 1.01988 1.01850 1.21530 0.95982 0.95153 1.03202 1.20290 0.85190 0.98782 1.03941 1.27046 1.01248 1.03673 0.90608 1.66070 1.04693 1.14485 1.30891 1.20341 0.90088 0.99037 0.93887 1.20709 0.93864 0.92986 0.93951 1.62287 1.48284 1.09320 1.04090 1.19892 0.92476 0.98424 0.82802 1.21108 1.37433 0.93761 1.02414 0.91817 1.24933 0.95347 0.97188 0.96801 1.69934 1.39159 1.31635 1.12878 0.86544 0.77512 0.84680 0.78996 1.20601 1.21346 1.19874 1.22095 0.87566 1.00087 0.96276 1.20260 0.97360 0.97813 0.96255 1.29360 0.93100 0.93469 0.93448 1.81238 1.10681 1.10276 1.11652 1.26783 1.02567 1.14865 0.95783 1.83792 0.98814 1.69706 1.13847 0.92384 0.92410 0.92780 0.90751 0.91840 0.90050 0.88801 0.93227 0.89143 0.94636 0.98023 0.92849 0.91984 0.88878 0.85760 0.88362 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 3 C -0.04 -0.40 5.80 -27.89 -0.16 -0.56 16 4 C 0.05 0.68 6.64 -13.46 -0.09 0.59 16 5 N -0.45 -7.09 10.53 -8.06 -0.08 -7.17 16 6 C 0.10 1.49 5.74 -84.23 -0.48 1.01 16 7 C 0.12 1.84 5.28 -4.98 -0.03 1.81 16 8 N -0.52 -9.79 4.65 -237.51 -1.10 -10.89 16 9 C 0.19 4.31 4.49 -4.98 -0.02 4.29 16 10 C -0.51 -13.18 8.50 -34.44 -0.29 -13.47 16 11 H 0.06 1.67 7.11 -52.49 -0.37 1.29 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -25.10 13.29 55.43 0.74 -24.37 16 14 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.07 1.17 4.94 -3.83 -0.02 1.16 16 19 C -0.08 -1.09 5.06 -29.52 -0.15 -1.24 16 20 C 0.22 3.54 15.44 -20.69 -0.32 3.22 16 21 N -0.46 -8.24 18.55 42.24 0.78 -7.46 16 22 C -0.26 -3.32 9.97 29.12 0.29 -3.03 16 23 S 0.08 0.94 23.18 -107.50 -2.49 -1.55 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.67 5.83 -51.93 -0.30 0.37 16 32 H 0.09 1.53 7.82 -51.93 -0.41 1.12 16 33 H 0.04 0.90 7.87 -51.93 -0.41 0.49 16 34 H 0.00 0.05 6.04 -51.93 -0.31 -0.26 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.06 0.96 6.56 -51.93 -0.34 0.62 16 37 H 0.09 1.76 6.82 -51.93 -0.35 1.41 16 38 H 0.12 2.01 6.29 -51.93 -0.33 1.68 16 39 H 0.10 1.16 6.24 -51.93 -0.32 0.83 16 40 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -29.84 348.15 -8.76 -38.61 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.67 Total: -1.60 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.16 Total: -6.80 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.33 Total: -49.89 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.84 -8.76 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132809690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.706 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds