Wall clock time and date at job start Tue Mar 31 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47275 * 2 1 4 4 C 1.50695 * 109.47598 * 180.02562 * 3 2 1 5 5 N 1.29019 * 124.92086 * 89.99675 * 4 3 2 6 6 C 1.31781 * 117.12845 * 180.02562 * 5 4 3 7 7 C 1.50700 * 122.75238 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47155 * 275.69390 * 7 6 5 9 9 C 1.46899 * 111.00004 * 164.38735 * 8 7 6 10 10 C 1.50697 * 109.46944 * 189.99641 * 9 8 7 11 11 H 1.07993 * 120.00332 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00031 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99695 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99992 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47458 * 90.00084 * 14 12 10 16 16 H 1.48505 * 109.46812 * 209.99872 * 14 12 10 17 17 H 1.48496 * 109.47227 * 329.99271 * 14 12 10 18 18 C 1.46898 * 110.99627 * 288.34115 * 8 7 6 19 19 C 1.52996 * 109.47401 * 297.35069 * 18 8 7 20 20 C 1.47201 * 109.47601 * 180.22088 * 19 18 8 21 21 N 8.94802 * 170.46615 * 165.70725 * 2 1 3 22 22 C 1.33638 * 114.49909 * 0.23354 * 6 5 4 23 23 S 1.70979 * 124.91396 * 269.99814 * 4 3 2 24 24 H 1.08997 * 109.47502 * 60.00164 * 1 2 3 25 25 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47150 * 299.99933 * 1 2 3 27 27 H 1.09000 * 109.47150 * 240.00067 * 2 1 3 28 28 H 1.08997 * 109.47502 * 119.99836 * 2 1 3 29 29 H 1.09005 * 109.47412 * 59.99808 * 3 2 1 30 30 H 1.09001 * 109.47164 * 300.00480 * 3 2 1 31 31 H 1.08998 * 109.47409 * 155.68772 * 7 6 5 32 32 H 1.09005 * 109.46848 * 35.69004 * 7 6 5 33 33 H 1.09002 * 109.47358 * 309.99758 * 9 8 7 34 34 H 1.09005 * 109.47142 * 69.99850 * 9 8 7 35 35 H 0.97001 * 119.99941 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47558 * 57.35837 * 18 8 7 37 37 H 1.09007 * 109.46937 * 177.35568 * 18 8 7 38 38 H 1.09003 * 109.47664 * 300.22626 * 19 18 8 39 39 H 1.09000 * 109.47170 * 60.22267 * 19 18 8 40 40 H 1.07996 * 126.03818 * 179.77220 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2851 1.4427 -1.0588 6 6 5.5908 1.4422 -0.8807 7 6 6.5699 1.4418 -2.0263 8 7 6.7831 0.0635 -2.4877 9 6 7.4228 0.0440 -3.8099 10 6 7.4031 -1.3602 -4.3567 11 1 6.9594 -2.1581 -3.7800 12 6 7.9516 -1.6261 -5.5935 13 7 8.4914 -0.6543 -6.2961 14 14 7.9266 -3.3665 -6.2716 15 1 6.6822 -3.5749 -7.0546 16 1 9.1052 -3.5719 -7.1514 17 1 7.9727 -4.3363 -5.1480 18 6 7.5689 -0.7028 -1.5113 19 6 8.9553 -0.0726 -1.3652 20 6 9.7446 -0.8436 -0.3907 21 7 10.3544 -1.4362 0.3659 22 6 5.9755 1.4367 0.3991 23 16 4.5261 1.4424 1.4010 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 7.5181 1.8645 -1.6941 32 1 6.1717 2.0414 -2.8448 33 1 6.8801 0.7048 -4.4859 34 1 8.4544 0.3843 -3.7196 35 1 8.8777 -0.8415 -7.1660 36 1 7.0610 -0.6914 -0.5469 37 1 7.6721 -1.7320 -1.8555 38 1 9.4617 -0.0805 -2.3304 39 1 8.8524 0.9552 -1.0173 40 1 6.9947 1.4319 0.7561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132809690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:11 Heat of formation + Delta-G solvation = 44.091684 kcal Electronic energy + Delta-G solvation = -20742.163343 eV Core-core repulsion = 17682.820390 eV Total energy + Delta-G solvation = -3059.342953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99792 -39.04175 -37.30100 -36.03364 -34.67852 -32.32015 -31.60264 -29.32775 -28.40477 -27.05254 -25.35717 -24.00817 -22.34179 -21.45235 -20.57036 -18.85439 -18.54309 -18.10321 -16.97185 -16.37723 -16.34287 -15.94053 -15.75713 -15.60551 -15.00944 -14.96686 -14.57203 -14.37265 -14.08334 -13.78546 -13.60155 -13.44447 -13.14064 -12.97434 -12.84112 -12.71295 -12.66707 -12.50342 -12.41058 -12.18763 -12.06833 -11.83192 -11.58150 -11.52042 -11.23727 -10.53571 -10.41673 -10.22792 -9.58512 -8.91284 -8.13880 -6.20336 -0.14229 0.54520 0.85852 1.43127 1.44982 1.53763 1.73785 1.77435 1.89054 2.44867 2.99067 3.19767 3.20654 3.55898 3.93181 4.11404 4.15111 4.15954 4.17093 4.31687 4.43584 4.48069 4.58359 4.67580 4.72124 4.84875 4.89520 4.89858 4.97701 5.15867 5.20347 5.28935 5.35894 5.37919 5.40887 5.46591 5.72571 6.12736 6.35427 6.57333 6.65732 6.94666 7.01367 7.48218 8.95888 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.004515 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.828697 B = 6200.273813 C = 7564.432105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.041 4.041 4 C 0.041 3.959 5 N -0.493 5.493 6 C 0.075 3.925 7 C 0.119 3.881 8 N -0.531 5.531 9 C 0.204 3.796 10 C -0.516 4.516 11 H 0.057 0.943 12 C 0.012 3.988 13 N -0.927 5.927 14 Si 0.951 3.049 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.077 3.923 19 C -0.062 4.062 20 C 0.245 3.755 21 N -0.493 5.493 22 C -0.260 4.260 23 S 0.142 5.858 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.004 0.996 34 H 0.001 0.999 35 H 0.262 0.738 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.256 7.225 15.930 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.082 4.082 4 C -0.238 4.238 5 N -0.208 5.208 6 C -0.057 4.057 7 C -0.011 4.011 8 N -0.254 5.254 9 C 0.078 3.922 10 C -0.554 4.554 11 H 0.075 0.925 12 C -0.187 4.187 13 N -0.568 5.568 14 Si 0.777 3.223 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.054 4.054 19 C -0.103 4.103 20 C -0.072 4.072 21 N -0.171 5.171 22 C -0.400 4.400 23 S 0.398 5.602 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.023 0.977 34 H 0.019 0.981 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.152 0.848 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.183 6.168 17.401 21.585 hybrid contribution 1.437 -0.360 -1.995 2.484 sum -9.747 5.808 15.406 19.133 Atomic orbital electron populations 1.21731 0.93515 1.02411 1.02720 1.21484 0.97392 0.94773 1.01893 1.20439 0.83578 0.99053 1.05142 1.27514 1.02519 1.02743 0.90978 1.66048 1.05462 1.16316 1.32943 1.20154 0.89911 1.01396 0.94273 1.20659 0.95494 0.90850 0.94079 1.62088 1.48430 1.11792 1.03051 1.19512 0.92104 0.96056 0.84511 1.21424 1.36530 0.95043 1.02434 0.92521 1.25631 0.95328 1.00416 0.97283 1.70029 1.40270 1.33284 1.13237 0.85662 0.77427 0.80854 0.78363 1.20477 1.20995 1.19418 1.21963 0.88769 0.98482 0.96144 1.20166 0.95473 0.99292 0.95391 1.29402 0.92381 0.92621 0.92784 1.81266 1.11658 1.11278 1.12906 1.27076 1.04464 1.13064 0.95409 1.83563 0.96856 1.68115 1.11706 0.92450 0.92248 0.90967 0.93702 0.91475 0.87177 0.89245 0.90461 0.91098 0.97743 0.98135 0.92860 0.90209 0.91527 0.87185 0.84780 0.78873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.12 -2.09 5.92 30.59 0.18 -1.91 16 3 C -0.04 -0.74 5.80 29.85 0.17 -0.57 16 4 C 0.04 0.98 6.64 88.52 0.59 1.57 16 5 N -0.49 -15.42 10.53 -179.41 -1.89 -17.30 16 6 C 0.07 2.17 5.74 41.52 0.24 2.41 16 7 C 0.12 3.74 5.28 85.56 0.45 4.19 16 8 N -0.53 -20.16 4.65 -905.36 -4.21 -24.37 16 9 C 0.20 9.55 4.49 85.56 0.38 9.93 16 10 C -0.52 -27.23 8.50 25.60 0.22 -27.01 16 11 H 0.06 3.01 7.11 -2.91 -0.02 2.99 16 12 C 0.01 0.65 5.46 84.66 0.46 1.11 16 13 N -0.93 -52.78 13.29 21.45 0.28 -52.49 16 14 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 C 0.08 2.49 4.94 86.30 0.43 2.92 16 19 C -0.06 -1.68 5.06 28.79 0.15 -1.54 16 20 C 0.24 7.33 15.44 89.42 1.38 8.71 16 21 N -0.49 -16.92 18.55 20.03 0.37 -16.55 16 22 C -0.26 -5.93 9.97 66.78 0.67 -5.26 16 23 S 0.14 2.79 23.18 -56.49 -1.31 1.48 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.93 5.83 -2.39 -0.01 1.92 16 32 H 0.07 2.47 7.82 -2.38 -0.02 2.45 16 33 H 0.00 0.23 7.87 -2.39 -0.02 0.22 16 34 H 0.00 0.05 6.04 -2.38 -0.01 0.03 16 35 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.08 2.32 6.56 -2.39 -0.02 2.31 16 37 H 0.07 2.52 6.82 -2.38 -0.02 2.51 16 38 H 0.11 3.46 6.29 -2.39 -0.02 3.45 16 39 H 0.13 2.72 6.24 -2.39 -0.01 2.70 16 40 H 0.19 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -65.33 348.15 2.34 -62.99 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.04 Total: 7.49 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 6.03 Total: -6.69 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -5.44 Total: -110.72 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.31 Total: 1.48 kcal Total: -65.33 2.34 -62.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132809690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.081 kcal (2) G-P(sol) polarization free energy of solvation -65.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds