Wall clock time and date at job start Tue Mar 31 2020 06:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47071 * 2 1 4 4 C 1.50695 * 109.47468 * 119.99902 * 2 1 3 5 5 N 1.29030 * 124.91889 * 119.99554 * 4 2 1 6 6 C 1.31780 * 117.12612 * 179.73830 * 5 4 2 7 7 C 1.50705 * 122.74691 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46720 * 275.17790 * 7 6 5 9 9 C 1.46907 * 110.99799 * 164.23738 * 8 7 6 10 10 C 1.50698 * 109.46970 * 190.00031 * 9 8 7 11 11 H 1.07998 * 120.00458 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99851 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99825 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99902 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47048 * 60.00787 * 14 12 10 16 16 H 1.48508 * 109.46813 * 179.97438 * 14 12 10 17 17 H 1.48489 * 109.47175 * 300.00384 * 14 12 10 18 18 C 1.46895 * 111.00159 * 288.19169 * 8 7 6 19 19 C 1.53008 * 109.47014 * 294.45171 * 18 8 7 20 20 C 1.47199 * 109.47039 * 176.73508 * 19 18 8 21 21 N 8.78493 * 92.09860 * 126.57842 * 2 1 3 22 22 C 1.33632 * 114.50183 * 0.02562 * 6 5 4 23 23 S 1.70974 * 124.91694 * 299.69897 * 4 2 1 24 24 H 1.09002 * 109.47330 * 300.00260 * 1 2 3 25 25 H 1.09004 * 109.47205 * 60.00096 * 1 2 3 26 26 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47065 * 240.00470 * 2 1 3 28 28 H 1.08996 * 109.46987 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47057 * 300.00195 * 3 2 1 30 30 H 1.09000 * 109.46792 * 60.00303 * 3 2 1 31 31 H 1.09002 * 109.47390 * 35.17885 * 7 6 5 32 32 H 1.08991 * 109.47248 * 155.18096 * 7 6 5 33 33 H 1.09002 * 109.46888 * 309.99818 * 9 8 7 34 34 H 1.08995 * 109.47134 * 69.99625 * 9 8 7 35 35 H 0.97000 * 120.00024 * 179.97438 * 13 12 10 36 36 H 1.08995 * 109.47282 * 54.45130 * 18 8 7 37 37 H 1.09004 * 109.47180 * 174.45676 * 18 8 7 38 38 H 1.09004 * 109.46655 * 296.73329 * 19 18 8 39 39 H 1.09000 * 109.46934 * 56.72962 * 19 18 8 40 40 H 1.07999 * 126.03882 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 7 2.7772 -1.7639 1.2226 6 6 3.1327 -2.2571 2.3918 7 6 4.0001 -3.4817 2.5303 8 7 3.1621 -4.6860 2.4570 9 6 3.9795 -5.8821 2.2131 10 6 3.0800 -7.0501 1.9008 11 1 2.0083 -6.9173 1.8846 12 6 3.6252 -8.2882 1.6346 13 7 4.9303 -8.4499 1.6537 14 14 2.5102 -9.7363 1.2481 15 1 1.7045 -9.4316 0.0384 16 1 3.3367 -10.9450 1.0002 17 1 1.6033 -9.9832 2.3977 18 6 2.3539 -4.8400 3.6740 19 6 3.2748 -5.0964 4.8687 20 6 2.4716 -5.1727 6.0998 21 7 1.8516 -5.2316 7.0499 22 6 2.6610 -1.5824 3.4444 23 16 1.7038 -0.2328 2.8389 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 4.7341 -3.5001 1.7247 32 1 4.5151 -3.4554 3.4905 33 1 4.6458 -5.7009 1.3697 34 1 4.5703 -6.1057 3.1013 35 1 5.3139 -9.3210 1.4668 36 1 1.7800 -3.9296 3.8465 37 1 1.6723 -5.6820 3.5534 38 1 3.8061 -6.0370 4.7225 39 1 3.9944 -4.2822 4.9541 40 1 2.8357 -1.8220 4.4829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132863426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:13 Heat of formation + Delta-G solvation = 65.151676 kcal Electronic energy + Delta-G solvation = -20875.293677 eV Core-core repulsion = 17816.863954 eV Total energy + Delta-G solvation = -3058.429723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93364 -37.71681 -36.06431 -35.48060 -32.69334 -30.87959 -29.94170 -27.43578 -27.40147 -25.79355 -24.57922 -23.46007 -21.02913 -20.12382 -19.43903 -17.45233 -17.33802 -16.27081 -15.70551 -15.45155 -14.71197 -14.68834 -14.43377 -14.23567 -13.87050 -13.63346 -13.40107 -13.05844 -12.90772 -12.41389 -12.36970 -12.26531 -12.02759 -11.77458 -11.71209 -11.43987 -11.37401 -11.21662 -11.12075 -10.95917 -10.72705 -10.62497 -10.25548 -9.91597 -9.44090 -9.31685 -9.23915 -8.59927 -8.47082 -7.40709 -6.08245 -4.09604 0.84586 1.48252 1.86539 2.98464 3.04797 3.07710 3.32252 3.36623 3.40038 4.01940 4.29842 4.40845 4.69107 4.88679 4.92142 4.99914 5.25863 5.28567 5.32598 5.36716 5.41548 5.44453 5.56256 5.60099 5.65754 5.70534 5.77451 5.93373 6.00104 6.02533 6.10217 6.24934 6.36179 6.56606 7.13744 7.17153 7.70719 7.82739 7.94721 8.02619 8.05413 8.41400 8.97176 9.55287 11.02105 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.014626 B = 0.004358 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.891830 B = 6423.033995 C = 7553.343285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.021 4.021 3 C -0.146 4.146 4 C 0.058 3.942 5 N -0.449 5.449 6 C 0.098 3.902 7 C 0.116 3.884 8 N -0.518 5.518 9 C 0.188 3.812 10 C -0.509 4.509 11 H 0.063 0.937 12 C 0.059 3.941 13 N -0.897 5.897 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.071 3.929 19 C -0.075 4.075 20 C 0.224 3.776 21 N -0.461 5.461 22 C -0.262 4.262 23 S 0.089 5.911 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.003 0.997 35 H 0.262 0.738 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 18.669 -0.370 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.043 4.043 3 C -0.204 4.204 4 C -0.221 4.221 5 N -0.163 5.163 6 C -0.034 4.034 7 C -0.015 4.015 8 N -0.240 5.240 9 C 0.064 3.936 10 C -0.548 4.548 11 H 0.081 0.919 12 C -0.142 4.142 13 N -0.536 5.536 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.060 4.060 19 C -0.117 4.117 20 C -0.093 4.093 21 N -0.139 5.139 22 C -0.402 4.402 23 S 0.343 5.657 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.020 0.980 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.144 0.856 39 H 0.116 0.884 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.312 19.059 0.559 19.794 hybrid contribution 0.845 -1.813 0.266 2.018 sum -4.467 17.246 0.826 17.834 Atomic orbital electron populations 1.21915 0.93312 1.02930 1.02341 1.19804 0.96028 0.95196 0.93238 1.21915 1.01757 0.94290 1.02424 1.27071 1.00117 0.96590 0.98338 1.66096 1.12390 1.09075 1.28710 1.20327 0.99335 0.97871 0.85856 1.20699 0.93007 0.86529 1.01221 1.62290 1.26028 1.03164 1.32549 1.19892 0.92312 0.85108 0.96277 1.21071 0.93580 0.92675 1.47458 0.91873 1.24933 0.94998 0.98830 0.95485 1.69927 1.10036 1.24108 1.49540 0.86605 0.80475 0.81624 0.79017 1.20150 1.21371 1.20288 1.22086 0.95968 1.02182 0.85718 1.20265 0.98068 1.06303 0.87050 1.29306 0.93523 0.92325 0.94192 1.81143 1.10517 1.09946 1.12311 1.26806 1.07841 1.01221 1.04298 1.83698 1.49737 1.29465 1.02788 0.92377 0.91372 0.91749 0.88005 0.92037 0.91353 0.92355 0.89149 0.93291 0.94665 0.97972 0.92791 0.92027 0.88974 0.85625 0.88356 0.81096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.09 37.15 0.34 -0.93 16 2 C -0.02 -0.21 3.35 -91.77 -0.31 -0.51 16 3 C -0.15 -1.14 9.09 37.16 0.34 -0.80 16 4 C 0.06 0.75 6.03 -13.46 -0.08 0.67 16 5 N -0.45 -7.24 10.53 -8.06 -0.08 -7.32 16 6 C 0.10 1.51 5.76 -84.23 -0.48 1.02 16 7 C 0.12 1.87 5.30 -4.97 -0.03 1.84 16 8 N -0.52 -9.86 4.65 -237.51 -1.10 -10.96 16 9 C 0.19 4.32 4.44 -4.97 -0.02 4.29 16 10 C -0.51 -13.18 8.54 -34.44 -0.29 -13.48 16 11 H 0.06 1.65 7.10 -52.49 -0.37 1.27 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -25.07 13.29 55.43 0.74 -24.33 16 14 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.07 1.19 4.94 -3.82 -0.02 1.17 16 19 C -0.08 -1.10 5.01 -29.51 -0.15 -1.25 16 20 C 0.22 3.56 15.43 -20.76 -0.32 3.24 16 21 N -0.46 -8.24 18.54 42.15 0.78 -7.46 16 22 C -0.26 -3.41 9.89 29.12 0.29 -3.12 16 23 S 0.09 1.01 22.53 -107.50 -2.42 -1.41 16 24 H 0.06 0.47 7.94 -51.93 -0.41 0.06 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 31 H 0.09 1.54 7.81 -51.93 -0.41 1.14 16 32 H 0.05 0.67 5.91 -51.93 -0.31 0.36 16 33 H 0.04 0.89 7.86 -51.93 -0.41 0.48 16 34 H 0.00 0.06 6.02 -51.93 -0.31 -0.25 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.06 0.96 6.42 -51.93 -0.33 0.62 16 37 H 0.09 1.73 6.90 -51.93 -0.36 1.38 16 38 H 0.13 2.07 6.43 -51.93 -0.33 1.74 16 39 H 0.10 1.20 6.19 -51.93 -0.32 0.88 16 40 H 0.17 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -29.84 346.31 -8.38 -38.22 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.65 Total: -1.54 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -0.84 Total: -6.36 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.33 Total: -50.08 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.42 Total: -1.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.84 -8.38 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132863426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.377 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds