Wall clock time and date at job start Tue Mar 31 2020 06:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47071 * 2 1 4 4 C 1.50695 * 109.47468 * 119.99902 * 2 1 3 5 5 N 1.29030 * 124.91889 * 119.99554 * 4 2 1 6 6 C 1.31780 * 117.12612 * 179.73830 * 5 4 2 7 7 C 1.50705 * 122.74691 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46720 * 275.17790 * 7 6 5 9 9 C 1.46907 * 110.99799 * 164.23738 * 8 7 6 10 10 C 1.50698 * 109.46970 * 190.00031 * 9 8 7 11 11 H 1.07998 * 120.00458 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99851 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99825 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99902 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47048 * 60.00787 * 14 12 10 16 16 H 1.48508 * 109.46813 * 179.97438 * 14 12 10 17 17 H 1.48489 * 109.47175 * 300.00384 * 14 12 10 18 18 C 1.46895 * 111.00159 * 288.19169 * 8 7 6 19 19 C 1.53008 * 109.47014 * 294.45171 * 18 8 7 20 20 C 1.47199 * 109.47039 * 176.73508 * 19 18 8 21 21 N 8.78493 * 92.09860 * 126.57842 * 2 1 3 22 22 C 1.33632 * 114.50183 * 0.02562 * 6 5 4 23 23 S 1.70974 * 124.91694 * 299.69897 * 4 2 1 24 24 H 1.09002 * 109.47330 * 300.00260 * 1 2 3 25 25 H 1.09004 * 109.47205 * 60.00096 * 1 2 3 26 26 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47065 * 240.00470 * 2 1 3 28 28 H 1.08996 * 109.46987 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47057 * 300.00195 * 3 2 1 30 30 H 1.09000 * 109.46792 * 60.00303 * 3 2 1 31 31 H 1.09002 * 109.47390 * 35.17885 * 7 6 5 32 32 H 1.08991 * 109.47248 * 155.18096 * 7 6 5 33 33 H 1.09002 * 109.46888 * 309.99818 * 9 8 7 34 34 H 1.08995 * 109.47134 * 69.99625 * 9 8 7 35 35 H 0.97000 * 120.00024 * 179.97438 * 13 12 10 36 36 H 1.08995 * 109.47282 * 54.45130 * 18 8 7 37 37 H 1.09004 * 109.47180 * 174.45676 * 18 8 7 38 38 H 1.09004 * 109.46655 * 296.73329 * 19 18 8 39 39 H 1.09000 * 109.46934 * 56.72962 * 19 18 8 40 40 H 1.07999 * 126.03882 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 7 2.7772 -1.7639 1.2226 6 6 3.1327 -2.2571 2.3918 7 6 4.0001 -3.4817 2.5303 8 7 3.1621 -4.6860 2.4570 9 6 3.9795 -5.8821 2.2131 10 6 3.0800 -7.0501 1.9008 11 1 2.0083 -6.9173 1.8846 12 6 3.6252 -8.2882 1.6346 13 7 4.9303 -8.4499 1.6537 14 14 2.5102 -9.7363 1.2481 15 1 1.7045 -9.4316 0.0384 16 1 3.3367 -10.9450 1.0002 17 1 1.6033 -9.9832 2.3977 18 6 2.3539 -4.8400 3.6740 19 6 3.2748 -5.0964 4.8687 20 6 2.4716 -5.1727 6.0998 21 7 1.8516 -5.2316 7.0499 22 6 2.6610 -1.5824 3.4444 23 16 1.7038 -0.2328 2.8389 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 4.7341 -3.5001 1.7247 32 1 4.5151 -3.4554 3.4905 33 1 4.6458 -5.7009 1.3697 34 1 4.5703 -6.1057 3.1013 35 1 5.3139 -9.3210 1.4668 36 1 1.7800 -3.9296 3.8465 37 1 1.6723 -5.6820 3.5534 38 1 3.8061 -6.0370 4.7225 39 1 3.9944 -4.2822 4.9541 40 1 2.8357 -1.8220 4.4829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132863426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:12 Heat of formation + Delta-G solvation = 46.983520 kcal Electronic energy + Delta-G solvation = -20876.081507 eV Core-core repulsion = 17816.863954 eV Total energy + Delta-G solvation = -3059.217553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02805 -39.08536 -37.36563 -36.39651 -34.66170 -32.11456 -31.28675 -29.01607 -28.04193 -27.14326 -25.67400 -25.11104 -22.18162 -21.32552 -20.56048 -18.82374 -18.46698 -18.08426 -16.96205 -16.62038 -16.34713 -15.84500 -15.68966 -15.30908 -15.01237 -14.97387 -14.61589 -14.23416 -13.95406 -13.74437 -13.60416 -13.44532 -13.15941 -13.02730 -12.92274 -12.77224 -12.70737 -12.49305 -12.39057 -12.23862 -12.10281 -11.87353 -11.77308 -11.53385 -11.23418 -10.52831 -10.43953 -10.24206 -9.58966 -8.91751 -8.13150 -6.19838 -0.14714 0.53259 0.86248 1.44850 1.45949 1.52992 1.74655 1.78212 1.88669 2.45445 2.99264 3.11900 3.21240 3.55080 3.87988 4.05820 4.15224 4.16632 4.19591 4.30204 4.41579 4.46333 4.57062 4.69878 4.78027 4.83390 4.89479 4.94684 4.95737 5.11873 5.16043 5.27961 5.33331 5.35940 5.37169 5.40543 5.72908 6.12865 6.35330 6.56966 6.65360 6.94810 7.00240 7.48712 8.96373 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.014626 B = 0.004358 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.891830 B = 6423.033995 C = 7553.343285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.025 4.025 3 C -0.140 4.140 4 C 0.046 3.954 5 N -0.496 5.496 6 C 0.075 3.925 7 C 0.120 3.880 8 N -0.532 5.532 9 C 0.204 3.796 10 C -0.517 4.517 11 H 0.057 0.943 12 C 0.012 3.988 13 N -0.927 5.927 14 Si 0.951 3.049 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.077 3.923 19 C -0.061 4.061 20 C 0.245 3.755 21 N -0.491 5.491 22 C -0.263 4.263 23 S 0.147 5.853 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.004 0.996 34 H 0.002 0.998 35 H 0.263 0.737 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 20.479 0.396 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.047 4.047 3 C -0.198 4.198 4 C -0.232 4.232 5 N -0.210 5.210 6 C -0.057 4.057 7 C -0.010 4.010 8 N -0.254 5.254 9 C 0.078 3.922 10 C -0.555 4.555 11 H 0.075 0.925 12 C -0.186 4.186 13 N -0.568 5.568 14 Si 0.777 3.223 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.053 4.053 19 C -0.103 4.103 20 C -0.071 4.071 21 N -0.170 5.170 22 C -0.403 4.403 23 S 0.402 5.598 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.022 0.978 34 H 0.020 0.980 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.438 20.892 1.331 21.902 hybrid contribution 1.150 -2.256 0.003 2.532 sum -5.288 18.637 1.335 19.418 Atomic orbital electron populations 1.21905 0.92101 1.02193 1.03889 1.19968 0.96945 0.96131 0.91640 1.21894 1.01233 0.92800 1.03879 1.27583 0.99267 0.96003 1.00377 1.66079 1.14256 1.10865 1.29813 1.20151 1.00710 0.98248 0.86599 1.20647 0.92717 0.85767 1.01892 1.62091 1.26243 1.02747 1.34343 1.19516 0.91675 0.86060 0.94925 1.21390 0.93681 0.93810 1.46632 0.92496 1.25633 0.96110 1.01246 0.95632 1.70027 1.11390 1.24580 1.50794 0.85716 0.78891 0.78872 0.78808 1.20087 1.21101 1.19656 1.21964 0.95691 1.02043 0.85611 1.20150 0.97781 1.06759 0.85607 1.29302 0.92748 0.91301 0.93796 1.81171 1.11417 1.11052 1.13349 1.27091 1.07048 1.01323 1.04835 1.83452 1.48038 1.27661 1.00673 0.91496 0.89182 0.93580 0.89323 0.92852 0.89287 0.91506 0.91096 0.90571 0.97819 0.98021 0.92855 0.90246 0.91402 0.87168 0.85061 0.78965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.09 71.98 0.65 -1.55 16 2 C -0.02 -0.47 3.35 -11.54 -0.04 -0.50 16 3 C -0.14 -1.89 9.09 71.99 0.65 -1.23 16 4 C 0.05 1.15 6.03 88.52 0.53 1.68 16 5 N -0.50 -15.89 10.53 -179.41 -1.89 -17.78 16 6 C 0.07 2.23 5.76 41.52 0.24 2.47 16 7 C 0.12 3.82 5.30 85.56 0.45 4.28 16 8 N -0.53 -20.32 4.65 -905.35 -4.21 -24.53 16 9 C 0.20 9.56 4.44 85.56 0.38 9.94 16 10 C -0.52 -27.21 8.54 25.60 0.22 -26.99 16 11 H 0.06 3.01 7.10 -2.91 -0.02 2.99 16 12 C 0.01 0.67 5.46 84.65 0.46 1.13 16 13 N -0.93 -52.66 13.29 21.45 0.28 -52.37 16 14 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 C 0.08 2.52 4.94 86.31 0.43 2.95 16 19 C -0.06 -1.71 5.01 28.79 0.14 -1.56 16 20 C 0.25 7.37 15.43 89.44 1.38 8.75 16 21 N -0.49 -16.84 18.54 20.01 0.37 -16.47 16 22 C -0.26 -6.20 9.89 66.77 0.66 -5.54 16 23 S 0.15 2.97 22.53 -56.49 -1.27 1.70 16 24 H 0.07 0.91 7.94 -2.39 -0.02 0.89 16 25 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.79 7.92 -2.39 -0.02 0.77 16 31 H 0.07 2.50 7.81 -2.39 -0.02 2.48 16 32 H 0.08 1.95 5.91 -2.39 -0.01 1.94 16 33 H 0.00 0.19 7.86 -2.39 -0.02 0.18 16 34 H 0.00 0.10 6.02 -2.39 -0.01 0.09 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.08 2.32 6.42 -2.39 -0.02 2.31 16 37 H 0.07 2.55 6.90 -2.38 -0.02 2.53 16 38 H 0.11 3.55 6.43 -2.39 -0.02 3.54 16 39 H 0.13 2.81 6.19 -2.39 -0.01 2.80 16 40 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -65.10 346.31 2.52 -62.58 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.04 Total: 7.77 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 6.17 Total: -6.19 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -5.44 Total: -111.15 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.27 Total: 1.70 kcal Total: -65.10 2.52 -62.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132863426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.561 kcal (2) G-P(sol) polarization free energy of solvation -65.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds