Wall clock time and date at job start Tue Mar 31 2020 06:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39921 * 120.46513 * 2 1 4 4 N 1.31706 * 119.82960 * 180.02562 * 3 2 1 5 5 C 1.33472 * 120.83597 * 0.02562 * 4 3 2 6 6 S 1.71202 * 119.51642 * 179.97438 * 5 4 3 7 7 N 1.34614 * 120.96929 * 359.97277 * 5 4 3 8 8 C 1.46493 * 119.93888 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.47494 * 278.00709 * 8 7 5 10 10 C 1.36939 * 120.00145 * 274.60277 * 9 8 7 11 11 H 1.07996 * 119.99645 * 141.43972 * 10 9 8 12 12 C 1.38810 * 120.00102 * 321.43742 * 10 9 8 13 13 N 1.31617 * 119.99898 * 339.81033 * 12 10 9 14 14 Si 1.86796 * 120.00038 * 159.80504 * 12 10 9 15 15 H 1.48498 * 109.46881 * 60.00281 * 14 12 10 16 16 H 1.48503 * 109.47040 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47339 * 300.00269 * 14 12 10 18 18 C 1.46503 * 119.99813 * 94.59813 * 9 8 7 19 19 C 1.55232 * 110.58246 * 238.33476 * 18 9 8 20 20 C 1.54889 * 102.58658 * 203.34129 * 19 18 9 21 21 C 1.54258 * 104.31385 * 37.93058 * 20 19 18 22 22 C 1.53870 * 106.59953 * 336.32275 * 21 20 19 23 23 C 1.35947 * 120.12328 * 0.28014 * 7 5 4 24 24 H 1.08997 * 109.47280 * 89.99650 * 1 2 3 25 25 H 1.09011 * 109.46657 * 209.99878 * 1 2 3 26 26 H 1.08997 * 109.47206 * 329.99119 * 1 2 3 27 27 H 1.08001 * 120.08687 * 0.05192 * 3 2 1 28 28 H 1.09005 * 109.47341 * 158.01043 * 8 7 5 29 29 H 1.09002 * 109.47080 * 38.00911 * 8 7 5 30 30 H 0.97001 * 120.00254 * 180.02562 * 13 12 10 31 31 H 1.08997 * 110.43413 * 0.91934 * 18 9 8 32 32 H 1.09003 * 110.90192 * 85.04978 * 19 18 9 33 33 H 1.09000 * 110.76496 * 321.57113 * 19 18 9 34 34 H 1.09000 * 110.48369 * 279.18117 * 20 19 18 35 35 H 1.09005 * 110.48494 * 156.67866 * 20 19 18 36 36 H 1.09007 * 110.03562 * 95.61174 * 21 20 19 37 37 H 1.09005 * 110.03515 * 216.98876 * 21 20 19 38 38 H 1.09011 * 110.03266 * 119.28819 * 22 21 20 39 39 H 1.09001 * 110.03470 * 240.66758 * 22 21 20 40 40 H 1.07996 * 120.41218 * 179.72204 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.2060 0.0000 4 7 3.5334 1.1914 -0.0005 5 6 4.2048 0.0379 -0.0015 6 16 5.9167 0.0583 -0.0028 7 7 3.5556 -1.1414 -0.0015 8 6 4.3152 -2.3941 -0.0033 9 7 4.7313 -2.7111 -1.3717 10 6 3.8819 -3.3870 -2.2065 11 1 3.8272 -3.1212 -3.2518 12 6 3.0913 -4.4138 -1.7091 13 7 3.4161 -5.0064 -0.5797 14 14 1.5663 -4.9544 -2.6427 15 1 1.9555 -5.4248 -3.9963 16 1 0.9010 -6.0592 -1.9064 17 1 0.6299 -3.8087 -2.7670 18 6 6.0562 -2.3048 -1.8471 19 6 5.9314 -1.3914 -3.0960 20 6 7.3075 -1.5706 -3.7840 21 6 7.6437 -3.0624 -3.5818 22 6 6.8481 -3.5293 -2.3503 23 6 2.1965 -1.1721 -0.0062 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6854 2.1465 0.0008 28 1 3.6892 -3.1991 0.3818 29 1 5.1967 -2.2853 0.6286 30 1 2.8638 -5.7242 -0.2322 31 1 6.6048 -1.7949 -1.0552 32 1 5.7778 -0.3525 -2.8042 33 1 5.1268 -1.7341 -3.7466 34 1 8.0582 -0.9420 -3.3050 35 1 7.2364 -1.3360 -4.8462 36 1 7.3435 -3.6352 -4.4594 37 1 8.7124 -3.1838 -3.4048 38 1 6.1618 -4.3286 -2.6301 39 1 7.5305 -3.8779 -1.5750 40 1 1.6710 -2.1156 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133106023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:28 Heat of formation + Delta-G solvation = 67.487213 kcal Electronic energy + Delta-G solvation = -22517.180870 eV Core-core repulsion = 19458.852423 eV Total energy + Delta-G solvation = -3058.328446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09632 -37.74634 -35.71786 -33.80976 -33.67331 -31.27116 -27.81881 -27.73989 -27.25567 -26.34023 -24.45902 -23.46235 -22.03389 -19.78173 -19.23449 -18.07478 -17.86225 -16.97563 -15.88728 -15.65425 -15.03948 -14.73573 -14.61126 -14.35919 -13.70593 -13.60662 -13.04168 -12.95940 -12.68590 -12.48289 -12.29643 -11.72048 -11.59264 -11.40181 -11.11742 -10.87474 -10.65341 -10.57494 -10.42008 -10.37365 -10.23260 -10.16534 -9.77218 -9.71490 -9.60568 -9.39891 -8.92115 -7.11947 -6.91509 -6.48275 -6.31753 -3.86237 0.66651 1.17942 2.59496 3.03071 3.13839 3.15177 3.25072 3.54891 4.09197 4.42371 4.63024 4.80560 4.85645 4.92419 5.11679 5.39378 5.53914 5.54410 5.56564 5.71810 5.74678 5.90521 5.99872 6.04801 6.28888 6.37080 6.44540 6.52738 6.56176 6.65798 6.71027 6.78352 6.84500 6.97111 6.98872 7.13945 7.26610 7.42510 7.50065 7.91617 8.11435 8.70893 9.30779 9.91383 10.70465 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.009437 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.519093 B = 2966.440203 C = 4725.497573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.238 4.238 3 C 0.208 3.792 4 N -0.496 5.496 5 C 0.446 3.554 6 S -0.607 6.607 7 N -0.427 5.427 8 C 0.296 3.704 9 N -0.539 5.539 10 C -0.265 4.265 11 H 0.069 0.931 12 C 0.017 3.983 13 N -0.879 5.879 14 Si 0.898 3.102 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.278 1.278 18 C 0.156 3.844 19 C -0.129 4.129 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.131 4.131 23 C 0.186 3.814 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.170 0.830 28 H 0.134 0.866 29 H 0.096 0.904 30 H 0.265 0.735 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.775 4.666 0.612 8.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.250 4.250 3 C 0.024 3.976 4 N -0.211 5.211 5 C 0.091 3.909 6 S -0.463 6.463 7 N -0.115 5.115 8 C 0.089 3.911 9 N -0.253 5.253 10 C -0.395 4.395 11 H 0.087 0.913 12 C -0.185 4.185 13 N -0.520 5.520 14 Si 0.726 3.274 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.204 1.204 18 C 0.049 3.951 19 C -0.168 4.168 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.170 4.170 23 C 0.038 3.962 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.187 0.813 28 H 0.150 0.850 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.683 4.913 0.693 6.822 hybrid contribution -2.387 -1.055 -0.730 2.710 sum -7.070 3.858 -0.037 8.054 Atomic orbital electron populations 1.20495 0.88718 1.03075 1.02652 1.20498 0.98777 0.93075 1.12674 1.23826 0.90668 0.98076 0.85011 1.69991 1.08041 1.25427 1.17680 1.23887 0.99193 0.81985 0.85871 1.92530 0.90049 1.94071 1.69636 1.49272 1.06085 1.12429 1.43741 1.22839 0.96916 0.80972 0.90380 1.44304 1.12131 1.58193 1.10651 1.19144 1.17018 1.10275 0.93083 0.91292 1.25331 1.00585 0.94933 0.97616 1.69878 1.37365 1.22914 1.21807 0.86434 0.82623 0.78229 0.80153 1.20047 1.21056 1.20436 1.22134 0.85083 0.92049 0.95815 1.22842 0.95615 1.00091 0.98225 1.22225 0.98184 0.96292 0.99034 1.22049 0.98840 0.96056 0.98664 1.22471 0.98287 1.00480 0.95722 1.23027 0.84964 1.00560 0.87644 0.91105 0.91287 0.91079 0.81275 0.84952 0.88562 0.92504 0.87690 0.92334 0.92399 0.92345 0.93237 0.92965 0.93248 0.90337 0.93558 0.80731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.04 36.00 0.36 -0.43 16 2 C -0.24 -3.03 5.87 -104.80 -0.62 -3.64 16 3 C 0.21 2.84 11.00 -16.98 -0.19 2.65 16 4 N -0.50 -9.25 10.39 -13.80 -0.14 -9.40 16 5 C 0.45 9.27 7.65 -88.22 -0.67 8.60 16 6 S -0.61 -14.19 24.49 -107.50 -2.63 -16.82 16 7 N -0.43 -8.19 2.83 -121.81 -0.34 -8.54 16 8 C 0.30 6.28 5.38 -63.76 -0.34 5.93 16 9 N -0.54 -12.11 2.70 -167.25 -0.45 -12.57 16 10 C -0.27 -6.24 7.80 -15.06 -0.12 -6.36 16 11 H 0.07 1.71 6.64 -52.49 -0.35 1.36 16 12 C 0.02 0.40 5.02 -17.43 -0.09 0.31 16 13 N -0.88 -21.01 11.41 55.49 0.63 -20.38 16 14 Si 0.90 18.28 29.60 -169.99 -5.03 13.25 16 15 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 18 C 0.16 3.39 2.47 -66.09 -0.16 3.23 16 19 C -0.13 -2.69 6.37 -24.55 -0.16 -2.84 16 20 C -0.12 -2.16 6.82 -25.08 -0.17 -2.33 16 21 C -0.12 -2.11 6.80 -25.62 -0.17 -2.28 16 22 C -0.13 -2.70 6.41 -25.62 -0.16 -2.87 16 23 C 0.19 2.91 10.07 -16.53 -0.17 2.74 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.55 8.09 -51.92 -0.42 0.13 16 26 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 27 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.13 2.89 5.31 -51.93 -0.28 2.61 16 29 H 0.10 2.15 6.65 -51.93 -0.35 1.81 16 30 H 0.26 6.12 8.31 -40.82 -0.34 5.78 16 31 H 0.11 2.45 4.93 -39.83 -0.20 2.26 16 32 H 0.06 1.32 7.45 -51.93 -0.39 0.93 16 33 H 0.06 1.27 6.54 -51.93 -0.34 0.93 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.81 6.99 -51.92 -0.36 1.44 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.18 2.53 8.00 -52.49 -0.42 2.11 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -28.37 328.33 -11.29 -39.66 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.61 Total: 7.13 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.66 Total: 2.71 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.31 Total: -50.88 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 16 Polarization: -14.19 SS G_CDS: -2.63 Total: -16.82 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.37 -11.29 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133106023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.148 kcal (2) G-P(sol) polarization free energy of solvation -28.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds