Wall clock time and date at job start Tue Mar 31 2020 06:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39921 * 120.46513 * 2 1 4 4 N 1.31706 * 119.82960 * 180.02562 * 3 2 1 5 5 C 1.33472 * 120.83597 * 0.02562 * 4 3 2 6 6 S 1.71202 * 119.51642 * 179.97438 * 5 4 3 7 7 N 1.34614 * 120.96929 * 359.97277 * 5 4 3 8 8 C 1.46493 * 119.93888 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.47494 * 278.00709 * 8 7 5 10 10 C 1.36939 * 120.00145 * 274.60277 * 9 8 7 11 11 H 1.07996 * 119.99645 * 141.43972 * 10 9 8 12 12 C 1.38810 * 120.00102 * 321.43742 * 10 9 8 13 13 N 1.31617 * 119.99898 * 339.81033 * 12 10 9 14 14 Si 1.86796 * 120.00038 * 159.80504 * 12 10 9 15 15 H 1.48498 * 109.46881 * 60.00281 * 14 12 10 16 16 H 1.48503 * 109.47040 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47339 * 300.00269 * 14 12 10 18 18 C 1.46503 * 119.99813 * 94.59813 * 9 8 7 19 19 C 1.55232 * 110.58246 * 238.33476 * 18 9 8 20 20 C 1.54889 * 102.58658 * 203.34129 * 19 18 9 21 21 C 1.54258 * 104.31385 * 37.93058 * 20 19 18 22 22 C 1.53870 * 106.59953 * 336.32275 * 21 20 19 23 23 C 1.35947 * 120.12328 * 0.28014 * 7 5 4 24 24 H 1.08997 * 109.47280 * 89.99650 * 1 2 3 25 25 H 1.09011 * 109.46657 * 209.99878 * 1 2 3 26 26 H 1.08997 * 109.47206 * 329.99119 * 1 2 3 27 27 H 1.08001 * 120.08687 * 0.05192 * 3 2 1 28 28 H 1.09005 * 109.47341 * 158.01043 * 8 7 5 29 29 H 1.09002 * 109.47080 * 38.00911 * 8 7 5 30 30 H 0.97001 * 120.00254 * 180.02562 * 13 12 10 31 31 H 1.08997 * 110.43413 * 0.91934 * 18 9 8 32 32 H 1.09003 * 110.90192 * 85.04978 * 19 18 9 33 33 H 1.09000 * 110.76496 * 321.57113 * 19 18 9 34 34 H 1.09000 * 110.48369 * 279.18117 * 20 19 18 35 35 H 1.09005 * 110.48494 * 156.67866 * 20 19 18 36 36 H 1.09007 * 110.03562 * 95.61174 * 21 20 19 37 37 H 1.09005 * 110.03515 * 216.98876 * 21 20 19 38 38 H 1.09011 * 110.03266 * 119.28819 * 22 21 20 39 39 H 1.09001 * 110.03470 * 240.66758 * 22 21 20 40 40 H 1.07996 * 120.41218 * 179.72204 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.2060 0.0000 4 7 3.5334 1.1914 -0.0005 5 6 4.2048 0.0379 -0.0015 6 16 5.9167 0.0583 -0.0028 7 7 3.5556 -1.1414 -0.0015 8 6 4.3152 -2.3941 -0.0033 9 7 4.7313 -2.7111 -1.3717 10 6 3.8819 -3.3870 -2.2065 11 1 3.8272 -3.1212 -3.2518 12 6 3.0913 -4.4138 -1.7091 13 7 3.4161 -5.0064 -0.5797 14 14 1.5663 -4.9544 -2.6427 15 1 1.9555 -5.4248 -3.9963 16 1 0.9010 -6.0592 -1.9064 17 1 0.6299 -3.8087 -2.7670 18 6 6.0562 -2.3048 -1.8471 19 6 5.9314 -1.3914 -3.0960 20 6 7.3075 -1.5706 -3.7840 21 6 7.6437 -3.0624 -3.5818 22 6 6.8481 -3.5293 -2.3503 23 6 2.1965 -1.1721 -0.0062 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6854 2.1465 0.0008 28 1 3.6892 -3.1991 0.3818 29 1 5.1967 -2.2853 0.6286 30 1 2.8638 -5.7242 -0.2322 31 1 6.6048 -1.7949 -1.0552 32 1 5.7778 -0.3525 -2.8042 33 1 5.1268 -1.7341 -3.7466 34 1 8.0582 -0.9420 -3.3050 35 1 7.2364 -1.3360 -4.8462 36 1 7.3435 -3.6352 -4.4594 37 1 8.7124 -3.1838 -3.4048 38 1 6.1618 -4.3286 -2.6301 39 1 7.5305 -3.8779 -1.5750 40 1 1.6710 -2.1156 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133106023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:28 Heat of formation + Delta-G solvation = 53.370546 kcal Electronic energy + Delta-G solvation = -22517.793014 eV Core-core repulsion = 19458.852423 eV Total energy + Delta-G solvation = -3058.940591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.54431 -39.37899 -37.22736 -35.36254 -34.96826 -32.98015 -29.39354 -28.93254 -28.79398 -28.01747 -25.91412 -24.85817 -23.56768 -21.40014 -20.86387 -19.56200 -19.27746 -18.60082 -17.39614 -17.28549 -16.72894 -16.23418 -16.04668 -15.92775 -15.12958 -14.88039 -14.54646 -14.12442 -13.94981 -13.78822 -13.46208 -13.24718 -13.12308 -13.04773 -12.70654 -12.46806 -12.28757 -12.15629 -12.05038 -11.97755 -11.83223 -11.82318 -11.27673 -11.18828 -11.01793 -10.91080 -10.67586 -8.86854 -8.61220 -8.25035 -8.07297 -5.68546 -0.67360 -0.15229 1.03755 1.41093 1.48591 1.54658 1.68335 2.20722 2.41169 3.04436 3.14224 3.42846 3.48180 3.58769 3.90792 3.97301 4.00413 4.21302 4.27093 4.39138 4.64584 4.68779 4.81235 4.85358 4.91286 4.91751 4.95202 5.01249 5.05257 5.17173 5.18881 5.26761 5.28309 5.34544 5.48005 5.54309 5.61505 5.62959 5.73905 6.32686 6.52611 6.93760 7.55263 8.17033 8.94359 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.009437 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.519093 B = 2966.440203 C = 4725.497573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.198 4.198 3 C 0.217 3.783 4 N -0.520 5.520 5 C 0.451 3.549 6 S -0.698 6.698 7 N -0.429 5.429 8 C 0.315 3.685 9 N -0.550 5.550 10 C -0.275 4.275 11 H 0.053 0.947 12 C -0.009 4.009 13 N -0.905 5.905 14 Si 0.954 3.046 15 H -0.287 1.287 16 H -0.285 1.285 17 H -0.262 1.262 18 C 0.154 3.846 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.110 4.110 22 C -0.127 4.127 23 C 0.159 3.841 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.226 0.774 28 H 0.129 0.871 29 H 0.074 0.926 30 H 0.265 0.735 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.041 0.959 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.036 5.753 0.038 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.209 4.209 3 C 0.036 3.964 4 N -0.237 5.237 5 C 0.092 3.908 6 S -0.557 6.557 7 N -0.115 5.115 8 C 0.107 3.893 9 N -0.265 5.265 10 C -0.405 4.405 11 H 0.071 0.929 12 C -0.209 4.209 13 N -0.546 5.546 14 Si 0.780 3.220 15 H -0.213 1.213 16 H -0.211 1.211 17 H -0.187 1.187 18 C 0.047 3.953 19 C -0.157 4.157 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.166 4.166 23 C 0.013 3.987 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.242 0.758 28 H 0.146 0.854 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.038 6.027 0.127 10.048 hybrid contribution -1.643 -1.273 -0.450 2.127 sum -9.681 4.753 -0.323 10.790 Atomic orbital electron populations 1.20718 0.84590 1.05507 1.04156 1.21121 1.01223 0.91318 1.07206 1.24796 0.88947 1.00752 0.81856 1.69937 1.10655 1.24253 1.18815 1.23366 0.98023 0.82903 0.86531 1.92616 0.93992 1.94626 1.74437 1.48742 1.07623 1.11331 1.43767 1.22363 0.96139 0.81260 0.89587 1.44294 1.12405 1.59200 1.10638 1.19041 1.17693 1.11094 0.92676 0.92928 1.25824 1.02327 0.94531 0.98222 1.69969 1.38214 1.23406 1.22988 0.85582 0.80034 0.78159 0.78181 1.21340 1.21055 1.18662 1.22086 0.85157 0.92390 0.95655 1.22653 0.96859 0.98401 0.97747 1.22191 0.96303 0.96486 1.00005 1.21996 0.99609 0.95722 0.97442 1.22390 0.97915 0.99286 0.97013 1.23514 0.83326 1.02744 0.89073 0.89741 0.90048 0.87644 0.75758 0.85447 0.90769 0.92539 0.89421 0.94421 0.93807 0.92209 0.91055 0.91963 0.91123 0.92974 0.93984 0.79511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 10.04 71.23 0.71 -0.30 16 2 C -0.20 -4.19 5.87 -19.98 -0.12 -4.31 16 3 C 0.22 5.01 11.00 85.12 0.94 5.95 16 4 N -0.52 -18.72 10.39 -197.56 -2.05 -20.78 16 5 C 0.45 19.05 7.65 179.51 1.37 20.42 16 6 S -0.70 -34.56 24.49 -56.49 -1.38 -35.94 16 7 N -0.43 -16.58 2.83 -539.31 -1.53 -18.10 16 8 C 0.31 13.92 5.38 170.96 0.92 14.84 16 9 N -0.55 -25.78 2.70 -683.05 -1.84 -27.62 16 10 C -0.28 -13.26 7.80 84.03 0.66 -12.61 16 11 H 0.05 2.68 6.64 -2.91 -0.02 2.66 16 12 C -0.01 -0.42 5.02 84.86 0.43 0.00 16 13 N -0.90 -43.83 11.41 21.65 0.25 -43.58 16 14 Si 0.95 36.96 29.60 68.60 2.03 38.99 16 15 H -0.29 -11.67 7.11 99.48 0.71 -10.97 16 16 H -0.29 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 18 C 0.15 7.04 2.47 46.18 0.11 7.16 16 19 C -0.12 -5.07 6.37 32.01 0.20 -4.87 16 20 C -0.11 -4.03 6.82 31.67 0.22 -3.82 16 21 C -0.11 -3.88 6.80 31.31 0.21 -3.66 16 22 C -0.13 -5.45 6.41 31.32 0.20 -5.25 16 23 C 0.16 4.66 10.07 83.53 0.84 5.50 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.82 8.09 -2.38 -0.02 0.80 16 26 H 0.10 0.58 8.10 -2.39 -0.02 0.56 16 27 H 0.23 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.13 5.76 5.31 -2.38 -0.01 5.75 16 29 H 0.07 3.57 6.65 -2.39 -0.02 3.56 16 30 H 0.26 12.31 8.31 -92.71 -0.77 11.54 16 31 H 0.09 4.39 4.93 -10.09 -0.05 4.34 16 32 H 0.04 1.76 7.45 -2.39 -0.02 1.75 16 33 H 0.04 1.97 6.54 -2.39 -0.02 1.96 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.05 2.49 6.99 -2.38 -0.02 2.48 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.19 5.01 8.00 -2.91 -0.02 4.99 16 Total: -1.00 -66.80 328.33 3.17 -63.63 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 1.00 Total: 24.37 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 6.70 Total: 19.04 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -5.17 Total: -110.09 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 16 Polarization: -34.56 SS G_CDS: -1.38 Total: -35.94 kcal Total: -66.80 3.17 -63.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133106023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.996 kcal (2) G-P(sol) polarization free energy of solvation -66.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds